Gene detail

Detailed information of PFX18816.1 in Stylophora pistillata

Genomic Location: Spis.scaffold391:166454...199687
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

lgrD

ATGGATTACGAAACGGAAGGTTGTCTTCACGAGATTTTTGTGCGCCAGATGAAAATAACCCAACAGACCGCCACAGCTGTTGTGTCGGATGATGGACGATCACTGTCCTTCTCAGAACTGGACCATCTCACGGATGTCTTGGCGACGAATCTCAGACACAAAGGGGTAAAAAAAAATGTCGCTGTTGGTATATTTCTCGAGAGATCGTTGGAATACCCTATAGCCTACGTCGCAATTTTGAAAGCCGGCGGGGCTTACATGCCCTTGGAACTTTCTTATCCTAAAACTTTGCTTTATTCGATTCTGGAGGATGCGAAACCCGCAGCGGTTATTACGACTGCAAGTTTTAAAGAGAGATTACCTAGCTCCGTTGAAGTGATTGTATTGAACGAGGGCTGGGAAGAGAAGCTCCAAGGGGAAAATTCTTCGAAGCCGCCTCTGAAGGAGGTTGCAAGTACGATCGATGATTTGGCATACATTGTTTATTCTTCAGGGACCACTGGCAAACCTAAAGGGATATGTTGCCCTCATCGTGGTGCAGTGTTTTCTTACACCTGGAGGTTTCAGAATTTTCCCTTCGAGGCAGATGACCGAGTGGCTTGTAATATTTTCTTTGTGTGGGAGCTGTTGCGACCTCTGCTGAAGGGAATACCCCTCTATCTCATTCCTGATTCAGTCATTTATGATCCGTATCTTCTGCTGAAGTTTATGAAGAAGAATGGAATAACAAGAGTTCTCTTCACTCCATCCCTTCTTGAGACGCTATTAACTTGTGGAGATGGTGATCTTCCCGGTCATTTGTCTTCTCTGAGAATCATCTGGTTGTGTGGGGAGGTGGTGACAACAGCTCTTCGAGACAGATGCATGAGAACGTTACCGTGGATAAAGCTATTGAATCTGTACAGCGTCTCCGAATGCCACGACGTGGCTACGGCAGATCTGACCAATATGCCTTTTCAAAGTGAACTTTCAGATTCTGATGACAACAAACGGAAGTTTTGTCCTGTCGGAAAACTGTTACCAGGAGTATATGTGTCGATCATGGACGAGAATTTGAAACCGCTTCCAGTGGGTTTATCAGGAGAGATTTTTGTTGGAGGGCCCACACTAGCTCAGGGCTACCTGAACAGACCAGAATTAGATGCCTCCAGATTTATAGAGCGTCCAAATGAAGTGCCAAAAGCTGCTGGTCCGCGGCTGTACAGGACAGGGGACTGGGGATACTTGCTATCATCTGGGTTATTAGAGATTTGTGGCAGATGTGATACAATGGTAAAAATCCGAGGATACAGCATTGAAATACAGGCTGTTGAAGCTGCCCTGTTGCAGCTACCCATGGTCAATGGATGCTCTGTGGTAGCCCACGGAGATGAAGGTGAAGATAAGTACCTGGCAGCTTATGTTGTTCCAGAAGGGAAAGCTAACAAGAAAGATATCAGAGCTGCTCTGAAGACAAGGCTTCCATTCTACATGATACCATCACATTTTGTTCTTCTTGCCAGTATTCCTGTGACGCCTGCGGGAAAGCTTGACAAAAACAGACTACCTGCCATTGGTTCATCTGGAACTGAAGAGGAAAGTTTGCCCAGCACTCCAACAGAACACGATCTCGCTAAGCTTTGGTGTGAATTATTAAACCTACCCAACATTGATGTTCAAGAGGGGTTTTTTGATTTAGGAGGACATTCTCTTTTGGTGACACAACTGCTGGTAAAAGTGAATAATAAGTTTGGTGTCAACTTGACAGTCCACGACCTGTTCAACTGCCCCACAGTAGCGGACATGGCCAAGACGATTGATCAACTTAAGGTCAACACTAGCAGGAGTGAAGATGCTAGGACGAAGATGAAAGAAAGCTGTTCGTGCATAAGGGATAAATCTGTGGACAAGGTTGACCTTCTGGAGGAAGTTAATTACCATTCAGCTGCCGAGGGAATTATGAACATGGATATCATGTTGAGAGCGTTTTGGCGCTCTGGAAACTTCAAGAACTTGCGTCGCTGGAACAGGGGACGTGTTATGTTGACAGGCGCTACTGGATTTTTGGGAGTATTCCTGCTTAGGGACCTCATCAGGTTGACAAAGGTTCACATTTTCTGTGTTGTGCGCGAGCGACCTGGTGGTAGAGATGGGAAAGAAAGGTTGAAGAAAGCTCTGCAGAGTTTCAAGATATTGCCACAAACGAACGATCGTCAGCAAATGACTGAAGAAGAGCGATACGTGGACTATGGCTTTGAGCACAGAGTTACTTTTGTGAAAGGTGATGTTTCTCTGATAAAGCTGGGAATGAGTGAAGAAGAATATGTGCACTTGTCATCCGAGATTGACTTCATTATTCATGCTGCCGCGGCAGTGAACATGGTTTATCCTTATCAGGCTTTGCGAGGAGCGAATGTTCAAGGAACCCAAAATGTCCTTCTTTTCGCATGTACCAGTAAAATTAAACCTCTTCATTATATCAGCACGGATGCTGTGTTTCCGCACGGATTGTCAAACTGTTCTGAAGATGCAGACATGATGCAATATGCATCGCAACTTGAGGATGGGTACTCTCAATCCAAATGGGTAGCAGAACAACTTGTGTTGAGAGCCAGGACTCAAGGCCTGCCTGTAGTCATCTACAGATTAGGAAACCTTGCAGGCGACCGGAAAAACTTTCAGTGGAACCCACTCGATTTTACGCTGTTGGTTTTTAAAGGAGTCACAGAAACATTAACTGCGCCTATTGTTGACTGGCAAATAGAGATGAATCCTGTAGATTTTGCCAGCGAAATGATTGTCAAAATGACCCAGGAAATGTCTACGACACTGGGGAAAGTTTATCATATTGTGAATCCACAACCTTTGAATGCAAAAATTGAAACTTACAGCAGTGGGAACCCAAAACGTGGACTAGCTCCTCTGCAACGCCTTCTCGATATCTGGATGACAGATTCGTCTTTTCTGTCCAACTTGAGCACTTACACTACCACAAATTTTAAAGGAGTTATGGAGCGGTTCAAAGTTGGGTTCCCTGTCTTCAATGGCGAACTTTTGTCAAGTTACTTTTCCTCTTTGGCTGCTCAATGTGTTTTACCGAGAATCAAGATCAGGTTAAAAGGTCCAAGGCCTCTTCAAGATAAGGTTGTCATAGTAACAGGAGCGTCCAGTGGAATTGGTGAAGCAATATCTAGAGCACTTGCAGAAAATGGCGCCAAAGTTGCCTTAGCTGCCAGGCGTAGGGATAGGTTGGACAAAATTCGAGACGATATAACGGAATTAGGAGACGTGGCAATTTCAGTGGACACAGATGTGGTCACCATTGAGCAGGTTGTTGATCTAGTTTCGCATACAAAAGACACATTAGGACCTGTGGACATCTTAGTAAATTGTGCTGGTCTGGGATTCTACACCGCAATGAAGAACTGTAATCTTGAAGAGTGGGAGAAAATGGTTGATGTCAACTGCAAGGGTGTGATGAACTGCATCGGCGCGGTGCTTCCAGGAATGCTGGAAAGAAAGCAGGGACACATCATCAACATCTCATCAAACGCTGGCCGAAAGGCTTTTCCTGGATTAGCCGTGTACGCTGCTACGAAGTTCTTTGTTGAGGCTTTGACGCAGAGCTTGAGGCTAGAGACAGTTGGAACCGGAGTAAAGGTCACGTCCATTCAACCAGGCGATGTGGCCACAGAGTTTGGTTTCCAAAGCTCAGATGACGAGGCTCGGGAAAAATACGAAGTTAGTGACGATGTGAAAAGACTTGATCCTTGCGATGTCGCGAATGCTGTTATCTATGCTGTCACACAACCTGCTCACTGCTCTGTCAACGAAATCCTAGTGGAACCTACAGACGCTCCTTGCTGA

Transcript

rna-Spis16801_mrna

GTTTGATTGCCCTTACTAGTTTCCCGCAGTAACAGTGAGGGAACCGAATCAATACCATGGATTACGAAACGGAAGGTTGTCTTCACGAGATTTTTGTGCGCCAGATGAAAATAACCCAACAGACCGCCACAGCTGTTGTGTCGGATGATGGACGATCACTGTCCTTCTCAGAACTGGACCATCTCACGGATGTCTTGGCGACGAATCTCAGACACaaaggggtaaaaaaaaatgtcgctGTTGGTATATTTCTCGAGAGATCGTTGGAATACCCTATAGCCTACGTCGCAATTTTGAAAGCCGGCGGGGCTTACATGCCCTTGGAACTTTCTTATCCTAAAACTTTGCTTTATTCGATTCTGGAGGATGCGAAACCCGCAGCGGTTATTACGACTGCAAGTTTTAAAGAGAGATTACCTAGCTCCGTTGAAGTGATTGTATTGAACGAGGGCTGGGAAGAGAAGCTCCAAGGGGAAAATTCTTCGAAGCCGCCTCTGAAGGAGGTTGCAAGTACGATCGATGATTTGGCATACATTGTTTATTCTTCAGGGACCACTGGCAAACCTAAAGGGATATGTTGCCCTCATCGTGGTGCAGTGTTTTCTTACACCTGGAGGTTTCAGAATTTTCCCTTCGAGGCAGATGACCGAGTGGCttgtaatattttctttgtgTGGGAGCTGTTGCGACCTCTGCTGAAGGGAATACCCCTCTATCTCATTCCTGATTCAGTCATTTATGATCCGTATCTTCTGCTGAAGTTTATGAAGAAGAATGGAATAACAAGAGTTCTCTTCACTCCATCCCTTCTTGAGACGCTATTAACTTGTGGAGATGGTGATCTTCCCGGTCATTTGTCTTCTCTGAGAATCATCTGGTTGTGTGGGGAGGTGGTGACAACAGCTCTTCGAGACAGATGCATGAGAACGTTACCGTGGATAAAGCTATTGAATCTGTACAGCGTCTCCGAATGCCACGACGTGGCTACGGCAGATCTGACCAATATGCCTTTTCAAAGTGAACTTTCAGATTCTGATGACAACAAACGGAAGTTTTGTCCTGTCGGAAAACTGTTACCAGGAGTATATGTGTCGATCATGGACGAGAATTTGAAACCGCTTCCAGTGGGTTTATCAGGAGAGATTTTTGTTGGAGGGCCCACACTAGCTCAGGGCTACCTGAACAGACCAGAATTAGATGCCTCCAGATTTATAGAGCGTCCAAATGAAGTGCCAAAAGCTGCTGGTCCGCGGCTGTACAGGACAGGGGACTGGGGATACTTGCTATCATCTGGGTTATTAGAGATTTGTGGCAGATGTGATACAATGGTAAAAATCCGAGGATACAGCATTGAAATACAGGCTGTTGAAGCTGCCCTGTTGCAGCTACCCATGGTCAATGGATGCTCTGTGGTAGCCCACGGAGATGAAGGTGAAGATAAGTACCTGGCAGCTTATGTTGTTCCAGAAGGGAAAGCTAACAAGAAAGATATCAGAGCTGCTCTGAAGACAAGGCTTCCATTCTACATGATACCATCACATTTTGTTCTTCTTGCCAGTATTCCTGTGACGCCTGCGGGAAAGCTTGACAAAAACAGACTACCTGCCATTGGTTCATCTGGAACTGAAGAGGAAAGTTTGCCCAGCACTCCAACAGAACACGATCTCGctaagctttggtgtgaattaTTAAACCTACCCAACATTGATGTTCAAGAGGGGTTTTTTGATTTAGGAGGACATTCTCTTTTGGTGACACAACTGCTGGTAAAAGTGAATAATAAGTTTGGTGTCAACTTGACAGTCCACGACCTGTTCAACTGCCCCACAGTAGCGGACATGGCCAAGACGATTGATCAACTTAAGGTCAACACTAGCAGGAGTGAAGATGCTAGGACGAAGATGAAAGAAAGCTGTTCGTGCATAAGGGATAAATCTGTGGACAAGGTTGACCTTCTGGAGGAAGTTAATTACCATTCAGCTGCCGAGGGAATTATGAACATGGATATCATGTTGAGAGCGTTTTGGCGCTCTGGAAACTTCAAGAACTTGCGTCGCTGGAACAGGGGACGTGTTATGTTGACAGGCGCTACTGGATTTTTGGGAGTATTCCTGCTTAGGGACCTCATCAGGTTGACAAAGGTTCACATTTTCTGTGTTGTGCGCGAGCGACCTGGTGGTAGAGATGGGAAAGAAAGGTTGAAGAAAGCTCTGCAGAGTTTCAAGATATTGCCACAAACGAACGATCGTCAGCAAATGACTGAAGAAGAGCGATACGTGGACTATGGCTTTGAGCACAGAGTTACTTTTGTGAAAGGTGATGTTTCTCTGATAAAGCTGGGAATGAGTGAAGAAGAATATGTGCACTTGTCATCCGAGATTGACTTCATTATTCATGCTGCCGCGGCAGTGAACATGGTTTATCCTTATCAGGCTTTGCGAGGAGCGAATGTTCAAGGAACCCAAAATGTCCTTCTTTTCGCATGTACCAGTAAAATTAAACCTCTTCATTATATCAGCACGGATGCTGTGTTTCCGCACGGATTGTCAAACTGTTCTGAAGATGCAGACATGATGCAATATGCATCGCAACTTGAGGATGGGTACTCTCAATCCAAATGGGTAGCAGAACAACTTGTGTTGAGAGCCAGGACTCAAGGCCTGCCTGTAGTCATCTACAGATTAGGAAACCTTGCAGGCGACCGGAAAAACTTTCAGTGGAACCCACTCGATTTTACGCTGTTGGTTTTTAAAGGAGTCACAGAAACATTAACTGCGCCTATTGTTGACTGGCAAATAGAGATGAATCCTGTAGATTTTGCCAGCGAAATGATTGTCAAAATGACCCAGGAAATGTCTACGACACTGGGGAAAGTTTATCATATTGTGAATCCACAACCTTTGAATGCAAAAATTGAAACTTACAGCAGTGGGAACCCAAAACGTGGACTAGCTCCTCTGCAACGCCTTCTCGATATCTGGATGACAGATTCGTCTTTTCTGTCCAACTTGAGCACTTACACTACCACAAATTTTAAAGGAGTTATGGAGCGGTTCAAAGTTGGGTTCCCTGTCTTCAATGGCGAACTTTTGTCAAGTTACTTTTCCTCTTTGGCTGCTCAATGTGTTTTACCGAGAATCAAGATCAGGTTAAAAGGTCCAAGGCCTCTTCAAGATAAGGTTGTCATAGTAACAGGAGCGTCCAGTGGAATTGGTGAAGCAATATCTAGAGCACTTGCAGAAAATGGCGCCAAAGTTGCCTTAGCTGCCAGGCGTAGGGATAGGTTGGACAAAATTCGAGACGATATAACGGAATTAGGAGACGTGGCAATTTCAGTGGACACAGATGTGGTCACCATTGAGCAGGTTGTTGATCTAGTTTCGCATACAAAAGACACATTAGGACCTGTGGACATCTTAGTAAATTGTGCTGGTCTGGGATTCTACACCGCAATGAAGAACTGTAATCTTGAAGAGTGGGAGAAAATGGTTGATGTCAACTGCAAGGGTGTGATGAACTGCATCGGCGCGGTGCTTCCAGGAATGCTGGAAAGAAAGCAGGGACACATCATCAACATCTCATCAAACGCTGGCCGAAAGGCTTTTCCTGGATTAGCCGTGTACGCTGCTACGAAGTTCTTTGTTGAGGCTTTGACGCAGAGCTTGAGGCTAGAGACAGTTGGAACCGGAGTAAAGGTCACGTCCATTCAACCAGGCGATGTGGCCACAGAGTTTGGTTTCCAAAGCTCAGATGACGAGGCTCGGGAAAAATACGAAGTTAGTGACGATGTGAAAAGACTTGATCCTTGCGATGTCGCGAATGCTGTTATCTATGCTGTCACACAACCTGCTCACTGCTCTGTCAACGAAATCCTAGTGGAACCTACAGACGCTCCTTGCTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00501 all species →	AMP-binding	AMP-binding enzyme	Family	Interproscan
PF07993 all species →	NAD_binding_4	Male sterility protein	Family	Interproscan
PF00106 all species →	adh_short	short chain dehydrogenase	Domain	Interproscan
PF13193 all species →	AMP-binding_C	AMP-binding enzyme C-terminal domain	Domain	Interproscan
PF00550 all species →	PP-binding	Phosphopantetheine attachment site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045851 all species →	Homologous_superfamily	AMP-binding enzyme, C-terminal domain superfamily	Interproscan
IPR036736 all species →	Homologous_superfamily	ACP-like superfamily	Interproscan
IPR010080 all species →	Domain	Thioester reductase-like domain	Interproscan
IPR020845 all species →	Conserved_site	AMP-binding, conserved site	Interproscan
IPR000873 all species →	Domain	AMP-dependent synthetase/ligase domain	Interproscan
IPR020806 all species →	Domain	Polyketide synthase, phosphopantetheine-binding domain	Interproscan
IPR006162 all species →	PTM	Phosphopantetheine attachment site	Interproscan
IPR013120 all species →	Domain	Fatty acyl-coenzyme A reductase, NAD-binding domain	Interproscan
IPR009081 all species →	Domain	Phosphopantetheine binding ACP domain	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR042099 all species →	Homologous_superfamily	ANL, N-terminal domain	Interproscan
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR025110 all species →	Domain	AMP-binding enzyme, C-terminal domain	Interproscan
IPR020904 all species →	Conserved_site	Short-chain dehydrogenase/reductase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44845 all species →	CARRIER DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031177 all species →	Molecular Function	phosphopantetheine binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX18816.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.