Gene detail

Detailed information of PFX18847.1 in Stylophora pistillata

Genomic Location: Spis.scaffold389:124951...143486
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

DPYS

ATGGCTTCTGCAATGGCGCAGAAAGACCGCATCCTTATCAAGGGTGGAATTGTTGTTAATGATGATGACATGATTGAAGCTGATGTCTTCATTGAGAGTGGAGTGATCAAGGAAGTTGGCAAAAATCTTGTTGTTCCTGGTGGTGCACGAGTCATTGATGCTCAGAAAAAACTTGTTATGCCTGGTGGAATTGATACTCACACCCATATGCAGCTTCCGTTCATGGGCACTGTTGCAATTGATGACTTTTACACAGGCACAAGAGCAGGGTTGGCTGGTGGCACCACTATGATAATTGACTTTGTCATTCCCAAGAAAGGAGAATCCCTGCTAGAGGCTTATGAAGTGTGGAGAAAATGGGCAGATGAAAAAGACTCACCTCGGTCAAAATTTAATTTATGCAAAACGTGCATGCATGTGCACTTGTATGAAAATGGGACTTATTCATTGAAAGCGAAGAAAGTGATGGAGGGTGTACCGTTTTGTGTTGCTAAAGACACATTTTACGAAAAGTTAGATGCCCTTAAAGGCTCCAAAAAAAGTAATAGTAAATTGACTGTATTCATAGATGATAAATTTTATGAGAATGCAAAGTACTGGCTCAAAAATGAACCCAAGAATCACGAGCAGTTCGGACTAACAAAGACAGATGTAGGGACGATTAAGAGAAAGCAGTGGACCATTCAAAATGACAACATCTTGTCAAAGGACCGAAAAATTGTAGTACCTAAAAGCCAACTTCATGGCATTTTATCCCAAGCTCATTCTTCAACCGCACACTGCAGGAGAGATAAAACTGGAGAGTTTGTAAAGAGAACATATGCAAAAATATCTCAACATGTTGTAACACTATTTGTCGGTCTGTGCCATCTACACCAACAACAAAAAAGTGTAACAGACCATTTGAAGCGGCCAATAACGAAACCAATACAGGCAAGTAATTTTCTGGCTCAAGTACAGTTGGATTTGATAGACTTTCGAAATTTGAATTGTTCTTGTGGAAAAAACCACAACTGGCTTTTACATGCAACTGATCATTACTGCAAGTTCTCCTGGCTTTTTCCTCTGTCACATATAACCAGTGAGGAAGTATTAGAAGCAGTCACACAACTCTTTTGGCAGGTTGGCTTTCCCAAAAAGCTTCACACAGATAATGGAAGAGAATTCAAGAATAAGAACATGATAGACTTTTGCAATAAACATAAAATTGACCTAGTTCATGGAGCTCCAAGAACTCCACAAACGCAGGGACTAGTTGAAAGAAACAACAGAACTGTTAAGGAAAACTTAGCAAACATCCTTAAGGAGAAACAAGTCAGCTTGAATACCTGGTGCAGATTTGTTGGAGAGGCTGCCTATAAGAGAAATGTCACAATACACAGAGCAACTTCAAGAAGCCCATATGAACTTGTCTTCGGCATTCTTCCCCATAGAAGCATGCCAACAACACCATCACCACAACAATGTTCCTCTATGGAAGCAGATAGACAACAAGAAGGTGAAGATGAAAATGAATGTGCAGAGAACACAATTGAAACAGAAGTTGAGGAGCCTACCAGAGTCTCAGACATAAACAATCCTACCTCCAAAAGAAAAGCTGAAGAAAGTTCATCTCAAAACAGAAAACAAATAAAAAGCCAAACAAATCAAAAACAAAATAAATACAATGAAAAAATGAGATCCACAAGACCGAGTGTAAAGAAATTTGAAGTCAATGATTATGTCTGCGTCAAAATTGATAAGATTGATAAAATGTGTTGTGATTATGCCTTCCATGTTGCTGTTACTTGGTGGAATGATGATGTTGGAGATGAGATGGAAACGCTTGTCAAGGAAAAAGGCATAAATTCCTTCAAGACCTTCATGGCTTATAAAGATGTTATGATGCTTACTGATGAAGAGATGTATCACTGTTACAGCAAATGCAAGGATATTGGAGCCATTGCACAAGTTCATGCTGAGAATGGAACTCTCATTGCTGAGAATGCAAAGAAGGTGCTTGCCCAGGGCATCACTGGCCCTGAGGGACATGAACTGTGTCGCACAGAAGAAGTAGAAACAGAAGCTTGTTTACGAGCCATCACCATAGCTAATCAGCTAAACTGCCCCCTGTACATTGTTCATGTCATGAGCAAGAGTTCAGCTGATGCTATTTGTGATGCCCGGCGACGAGGCTGTGTTGTCGTAGGGGAACCAATTGCTGCAAGTTTAGGAACTGATGGAACAAATTACTACCACAAGTGCTGGAGGCATGCAGCAGGTCATGTTATGGGGCCCCCTCTAAGACCAGACCCAACCACACCTGGTCACCTCATGGATCTTCTTGCAAACGATGACCTTCAGGTGACTGGAACAGACAACTGTACTTTCAGTGCAAATCAGAAGGCTCTTGGAAAAAAAGATTTTCGAAAGATTCCAAATGGAGTTAATGGGGTGGAAGATAGAATGTCTGTAATTTGGGAAAAAGGAGTGGCATCGGGGAAAATGGACCCATGTCGGTTTGTTGCAGTGACCAGCACAACAGCCGCCAAGATATTCAATATCTACCCAAGGAAGGGCCGTATCGCCGTAGGATCTGATGCAGATGTCATTGTATGGGACCCTGAAGCCACACGAGTTATATCTGCCAAAACTCACCATCAAGCAGTAGATTTCAACATCTTTGAGGGAATGGAATGTCATGGGGTGACGGAAGTTACCATCTGTCAAGGAAAAGTGGTTTATGAACATGGAGAGCTCAACGTAGTGCGTGGATCGGGACGGTTTATACCTACTCCACCCTACCCATCGTATATGTATGGCCGAATCTTGAAACGAGATGTGACTCGTAAACTGGTCAAAGTTGAGAGGGAGCCGTACAATGGTCCCGTGATAGAGATACCCTTTTCGGAGCCCATACCTGTTGTGTCCCCATCGCAGCGCAAACAGAAGCAACAAGAGCAGAAGAAAAGTGGTGCCGCGAGAGACCTTCACAAGTCTGGCTTTGAGCTCTCTGGTAAACAAGATGATGATAATGTGCCCGGGAGATCTTCTACCCGCGTTTGTAAGCCGCCTGGTGGTGGTTCCTCGCTGTCACTGAGCTGA

Transcript

rna-Spis16759_mrna

ATGGCTTCTGCAATGGCGCAGAAAGACCGCATCCTTATCAAGGGTGGAATTGTTGTTAATGATGATGACATGATTGAAGCTGATGTCTTCATTGAGAGTGGAGTGATCAAGGAAGTTGGCAAAAATCTTGTTGTTCCTGGTGGTGCACGAGTCATTGATGCTCAGAAAAAACTTGTTATGCCTGGTGGAATTGATACTCACACCCATATGCAGCTTCCGTTCATGGGCACTGTTGCAATTGATGACTTTTACACAGGCACAAGAGCAGGGTTGGCTGGTGGCACCACTATGATAATTGACTTTGTCATTCCCAAGAAAGGAGAATCCCTGCTAGAGGCTTATGAAGTGTGGAGAAAATGGGCAGATGAAAAAGACTCACCTcggtcaaaatttaatttatgcaaaacgTGCATGCATGTGCACTTGTATGAAAATGGGACTTATTCATTGAAAGCGAAGAAAGTGATGGAGGGTGTACCGTTTTGTGTTGCTAAAGACACATTTTACGAAAAGTTAGATGCCCTTAAAGGCTCCAAAAAAAGTAATAGTAAATTGACTGTATTCATAGATGATAAATTTTATGAGAATGCAAAGTACTGGCTCAAAAATGAACCCAAGAATCACGAGCAGTTCGGACTAACAAAGACAGATGTAGGGACGATTAAGAGAAAGCAGTGGACCATTCAAAATGACAACATCTTGTCAAAGGACCGAAAAATTGTAGTACCTAAAAGCCAACTTCATGGCATTTTATCCCAAGCTCATTCTTCAACCGCACACTGCAGGAGAGATAAAACTGGAGAGTTTGTAAAGAGAACATATGCAAAAATATCTCAACATGTTGTAACACTATTTGTCGGTCTGTGCCATCtacaccaacaacaaaaaagtgtaACAGACCATTTGAAGCGGCCAATAACGAAACCAATACAGGCAAGTAATTTTCTGGCTCAAGTACAGTTGGATTTGATAGACTTTCGAAATTTGAATTGTTCTTGTGGAAAAAACCACAACTGGCTTTTACATGCAACTGATCATTACTGCAAGTTCTCCTGGCTTTTTCCTCTGTCACATATAACCAGTGAGGAAGTATTAGAAGCAGTCACACAACTCTTTTGGCAGGTTGGCTTTCCCAAAAAGCTTCACACAGATAATGGAAGAGAATTCAAGAATAAGAACATGATAGACTTTTGCAATAAACATAAAATTGACCTAGTTCATGGAGCTCCAAGAACTCCACAAACGCAGGGACTAGTTGAAAGAAACAACAGAACTGTTAAGGAAAACTTAGCAAACATCCTTAAGGAGAAACAAGTCAGCTTGAATACCTGGTGCAGATTTGTTGGAGAGGCTGCCTATAAGAGAAATGTCACAATACACAGAGCAACTTCAAGAAGCCCATATGAACTTGTCTTCGGCATTCTTCCCCATAGAAGCATGCCAACAACACCATCACCACAACAATGTTCCTCTATGGAAGCAGATAGACAACAAGAAggtgaagatgaaaatgaatgTGCAGAGAACACAATTGAAACAGAAGTTGAGGAGCCTACCAGAGTCTCAGACATAAACAATCCTACCTCcaaaagaaaagctgaagaaagTTCAtctcaaaacagaaaacaaataaaaagccaaacaaatcaaaaacaaaataaatacaatgaaaaaatgagATCCACAAGACCGAgtgtaaagaaatttgaagtcAATGATTATGTCTGCGTCAAAATTGATAAGATTGATAAAATGTGTTGTGATTATGCCTTCCATGTTGCTGTTACTTGGTGGAATGATGATGTTGGAGATGAGATGGAAACGCTTGTCAAGGAAAAAGgCATAAATTCCTTCAAGACCTTCATGGCTTATAAAGATGTTATGATGCTTACTGATGAAGAGATGTATCACTGTTACAGCAAATGCAAGGATATTGGAGCCATTGCACAAGTTCATGCTGAGAATGGAACTCTCATTGCTGAGAATGCAAAGAAGGTGCTTGCCCAGGGCATCACTGGCCCTGAGGGACATGAACTGTGTCGCACAGAAGAAGTAGAAACAGAAGCTTGTTTACGAGCCATCACCATAGCTAATCAGCTAAACTGCCCCCTGTACATTGTTCATGTCATGAGCAAGAGTTCAGCTGATGCTATTTGTGATGCCCGGCGACGAGGCTGTGTTGTCGTAGGGGAACCAATTGCTGCAAGTTTAGGAACTGATGGAACAAATTACTACCACAAGTGCTGGAGGCATGCAGCAGGTCATGTTATGGGGCCCCCTCTAAGACCAGACCCAACCACACCTGGTCACCTCATGGATCTTCTTGCAAACGATGACCTTCAGGTGACTGGAACAGACAACTGTACTTTCAGTGCAAATCAGAAGGctcttggaaaaaaagattttcgaAAGATTCCAAATGGAGTTAATgGGGTGGAAGATAGAATGTCTGTAATTTGGGAAAAAGGAGTGGCATCGGGGAAAATGGACCCATGTCGGTTTGTTGCAGTGACCAGCACAACAGCCGCCAAGATATTCAATATCTACCCAAGGAAGGGCCGTATCGCCGTAGGATCTGATGCAGATGTCATTGTATGGGACCCTGAAGCCACACGAGTTATATCTGCCAAAACTCACCATCAAGCAGTAGATTTCAACATCTTTGAGGGAATGGAATGTCATGGGGTGACGGAAGTTACCATCTGTCAAGGAAAAGTGGTTTATGAACATGGAGAGCTCAACGTAGTGCGTGGATCGGGACGGTTTATACCTACTCCACCCTACCCATCGTATATGTATGGCCGAATCTTGAAACGAGATGTGACTCGTAAACTGGTCAAAGTTGAGAGGGAGCCGTACAATGGTCCCGTGATAGAGATACCCTTTTCGGAGCCCATACCTGTTGTGTCCCCATCGCAGCGCAAACAGAAGCAACAAGAGCAGAAGAAAAGTGGTGCCGCGAGAGACCTTCACAAGTCTGGCTTTGAGCTCTCTGGTAAACAAGATGATGATAATGTGCCCGGGAGATCTTCTACCCGCGTTTGTAAGCCGCCTGGTGGTGGTTCCTCGCTGTCACTGAGCTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF01979 all species →	Amidohydro_1	Amidohydrolase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011778 all species →	Family	Hydantoinase/dihydropyrimidinase	Interproscan
IPR011059 all species →	Homologous_superfamily	Metal-dependent hydrolase, composite domain superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR006680 all species →	Domain	Amidohydrolase-related	Interproscan
IPR050378 all species →	Family	Metallo-dependent Hydrolases Superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11647 all species →	HYDRANTOINASE/DIHYDROPYRIMIDINASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016810 all species →	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0004157 all species →	Molecular Function	dihydropyrimidinase activity	Interproscan
GO:0006208 all species →	Biological Process	pyrimidine nucleobase catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01464	DPYS, dht, hydA; dihydropyrimidinase	EC:3.5.2.2	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.