Gene detail

Detailed information of PFX18996.1 in Stylophora pistillata

Genomic Location: Spis.scaffold382:266744...278135
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis16635_mrna

CGATAACCGCTTGACCGGTCCAACGAGAGTAGCAGATCTGAGATGAACATAAACGTCCACGAAGATGACCGATCGGCAGTTTTCAATCATGCCCCGGACTGTCTAAGATCGAAGGGTCTTCCGAGATGTACCTGCGATGATTTGCCAATCTTTGATTGTGAAGAGGAATCACCTCTAATAACATACCAAAACTACAGCGAAGGGCCCGATGTTAGCTATCTCACGGATATTCATTGCCACGAAAGTAAACCTATTCATTCGAATGCAAGAGCAAGAAAGAAACTGGTCGTAGCAAGCGTGGTTTGCCTTCTTTTCGTGATCGCAGAAGTTGTCGGTGGTTGGCTTGCTGGTAGTTTGGCCATTATGACAGATGCTGCTCATATGTTATCTGACTTTGCGTCATTCCTAATCAGCCTTTTTGCTATCTGGGTTGCCCAGTGGCTTCCAGATAAAAGGAGGACATTTGGCTATTACAGAGCAGAGGTACTTGGTGCACTTGTGTCAGTGCTTATCATTTGGGTGTTAACCGGAGTGTTGGTGTATCTTGCTGTGATAAGAGTCTTGTCAAAGGATTTTACGATAAATGCAGATATCATGCTTATCACAGCAGGCACAGGATTAGGAGTGAATATCTTGTTAGGTATTATTCTCCATCAGACAGGCATTGGACATAATCACAGCCATGGTGGTGGAGGTCACAGTCATACAAGCACCAGTCATGCTAGCCATAATGGGAAATTTGAATCCGTTTCTACCAATCGAATTTTAAGAAGTGGAAGCCTGTctggaaaacaaaacatcaatgTGCGAGCTGCATTTATTCATGTTTTAGGAGACATTGTTCAGAGTGTGGGAGTCCTTATTGCAGCATACATCATCAAATATAAGCCCGAATGGAAGCTTGCTGACCCTATCTGTACattccttttttctctgttgGTTCTTCTAACAACTCTTAACATTCTCAAAGAGACAATTCATGTTTTGATGGAAGGCACTCCCAAAGATATCAAGTACAATAATGTCAAGGTGTCACTGGAGGGTATTGAAGGAGTTGTGGCAGCACACAGTTTACACATCTGGTCCCTGACAGTCAACAAAGCTGCTCTAGCTGTCCATTTGGCAATAGAACAAGGATATGACTCACAGAAAGTCCTCAACATTGCAAATCAGAAGTTGAAGAACGACTTTCATATTTACCACAGTACTATTCAAGTAGAGCTGTATCAGGAAACTGTGATGACTAACTGCTCTGAGTGTCAAGACTTGCAAGACTAAATTTTTCAGGTGTAGATGATGGCATGGTGCGAGGTCTGGGTGCTGGTATCACCTTTAGGCACCACAATTATGGTCAAATAAGTAAGCCCTGTAGTTCTTTtaaataaccctttaactccaggagtgataaacatgtaacttctcccttctatatccatacattatccagtaaacaagtgatgagaatattcaaacttatcaggtagaagttgttatcttgatgtaacaccaaattctcatcactgatttacaaggaaatgtgtagcaatcaaaggggagaattaataaattagatcttgggagtaaaagggatAACCATGAAACTGTGCTTTGCACTCCTTGTTTCTGTATAATAACTTGAATTTAAAAGTCATTCCACCAATacaatttgattatttttatagACAGTTATTGAGTGTAGGTACAATTAAAGTTAACTGTTATGGGCTGTAACAGTTGAAGTTTTATGAAGTCTCATTTGTTGTGATGATCCAAAAATGTGCAAGTCATTTTAAAGTCACATTGTACTGAATTACATGACTAGCCATAGATCAAAATCACATATTAATCAGTTTGTTTGTGTAATTGTAAATTACCTCACCTAGACACCTGGGTGTTGAAAATATTGTAGGATGTATAGACAATCATAGAAAATCTCTGAACCTATCCAGAAAGCATTAAAATCTATGTAGTTATTTCTTGTTTCCATTACAGATTCCTTAAACAAGAAAACATAGCAGAAATTGAGCTCAGTTTGAGCAATCAGTTATGATTTCAGTTTTCCATATAAATAGCAACTCCTTGACAAGGCAATCAATTTACCTCTACATTTTGCTGGTATTTCTTTGCATCACTGAAAGTTTATGCAGtaaattcttctttaaaagGTGTTTCAAATTTAGACAAATTTAACTCCTTTTCTAAGAAGTGATTACATATTCTAATTATTTTAAGTGAGGATTTTCACTTTACAGCCATTTAGGTTCTTATAAAGAGCAGCATAAACAATGATTATATGTAGCAAGCACTGGTTACTTTATGAAACTACAAAGGACTGGTGCATGTAAATTTTGATCTGTATTATACATGATGactatttcataatttgaatcTCTGGTACCATTTAATGTACTTTCAGTTGTACTATCAGAAAAATTGTTGACTAGTTTTCTAGGACCATGTATTTGAGTTTGTTCCCACTGTGACCTTTTTTTGACAGTCATTTGGTAAGTggtaacatttttatttgcatgCAATGCTATGACAATGCACCTTCATCTTCTTTAAGAACATTTCCACTGGCTGTGTCCAAGTTTTAAGCCTTGATAAGTTGTATGAAACTTTAGCAATACTTTTTTTTGGGTGACCAAACTGAAATTTCTGGCAACCTTCTTATGATGATTGCAGAATAGTGATTTTCCAAGGAGTTGAACTTGAGAAgggaacatttttaaatttgggGAGATGGGAATTGTTTCTcacaaaatattgaatttttaatatatttccAGTACTAATGTAGAACTTTGAAAGTGGcttaatgcatttttttttcaaatgccaGTGACAGTAACTGATGATTAAATAATCATAAACTTATGGTGTTATATCAtggtaatttattttcataaataaaCAGAGACTATTATATtacaaaatag

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01545 all species →	Cation_efflux	Cation efflux family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050681 all species →	Family	Cation Diffusion Facilitator/SLC30A	Interproscan
IPR002524 all species →	Family	Cation efflux protein	Interproscan
IPR027469 all species →	Homologous_superfamily	Cation efflux transmembrane domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11562 all species →	CATION EFFLUX PROTEIN/ ZINC TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005385 all species →	Molecular Function	zinc ion transmembrane transporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0010043 all species →	Biological Process	response to zinc ion	Interproscan
GO:0061088 all species →	Biological Process	obsolete regulation of sequestering of zinc ion	Interproscan
GO:0071577 all species →	Biological Process	zinc ion transmembrane transport	Interproscan
GO:0006812 all species →	Biological Process	monoatomic cation transport	Interproscan
GO:0008324 all species →	Molecular Function	monoatomic cation transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14689	SLC30A2, ZNT2; solute carrier family 30 (zinc transporter), member 2	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.