Gene detail

Detailed information of PFX19001.1 in Stylophora pistillata

Genomic Location: Spis.scaffold381:129905...143945
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ATXN2L

ATGAGTGTTCAGAAACATCGAGGCAAAGCTCGTGGAGGCAGTGGCAGGGGTCAAAAAAATTTCAGACCAGGTTCTAGTGCAAGTCCTCCTCCTCAGACATTTGACTTTGCCAAATTTGAGGATGGCAACGGTACAGATATCTTCTCAAACAAGTACATGGTTTACTCTGTTACCAGCAATTTGGGTGAGACAGCCCGTGTTCAGGTTGTCAATGGTGATATCTATGAAGGAATCCTCAAAGCTGTTTCCTCCAAGTTTGAATGTTCCCTAGGGGAAGTTCATCTTGTACAACAAAAGAAAAGCAACGGACTTGTCATTGAGGATGAACAAACTTTACCCAGCCGTGATGGTCTAATCAGCAATCTCCTGATTGCACTGAAAGATATTGTGAGTGTCAAAATAACCAAAACAGAGGAACCAGAGATTGCAACCTCAGTTGATTCTTTCACAGATGCAGGCATCACAAATGCTGATCAGAAGGAAACCAATGGTCAGATGAATGAGCGTGAGCTGGAGAGATGGGTTCCAGATGATCCTGACATTGGAGGGGGCTTAGAAGATAATGTCAAAGTGAATGGCTGGTCACCAGATGAGATGTTCAAAACCAATCAGGAAAAGTTTGGTGTTACATCGACATACAGTGAAGACCTGTTACAGTACACAACACCACTTCCAAAGGACAGCACTCGTGAGATGGAACTCAAAGCAGAACAAACAGCCCGTGAAATTGAGCAGTCCCATGGGCACCTGCACCGCCAAGAAGTTGATAGTGGTAAAACGGAAGAGGAACTGCATGCAGCTGTCGTCAGACCTCAAACCACAAGCACAGCTCCAAGAACACCTCAGGTGTCTTCTGAACAGTCTTCTGTAGAAGGAAAGCCACAAAGAGAAGCTGCTCCTGAAACAACTCCATCATCTGATGAGCAAAAAGCGACTGACACCAACACACCAGCAGTGCAGGCAAATGCCAAACCCACAAGTGCTGTTACTGTTAACACAGGGAACACTGTAACACAATCCTCTGGTGGTCAAAGCTTAAAGGAATCTTCCACCGAAGGACAAACAGCTTCTACAGACACTCAATCCTCTGGTTCCAAGGCAAAACAATCTGAAGTTATGAAAGATTTAAAAGAATTTCATTCCAACTTCAATCTGAAAGAAAACTCTTCCAAGAAGGAAAAAGAAGGGCAACAAACAGTTTCCCAAGAGGCAGATCAGGCTGAGGCTGCTGTGACTAAGACTACAACGTCATCTGGTAATGAATCTGGAGCACCATCCACCCCAGATGTGCCCAAATCAGACGAGAAAAAGGATGGGGAGGAGAGCATTCTGTTTAAGTCAAAGCTGAATCCAAATGCAAAAGAATTTAAATTCACTCCAAAGGCTCAAAAGCAAACTCCACCTCCACCACAATACATTCCAGCAGTGGTTCCTTATTCACCAACCTCTATGAGACCACCAGTGCCAGGAGGTCCTTTTCCTCTGCACCCTCCGCCGATGATGATGGTACCTTCACCACCATACTACAGAGGCAAACAGCCATTTAATAAACCTGTACGAAATCATTCATACGGAGGTGGCCGTGACCAAGTGGAATCACCACCTTCCTTCATATCGGCAGCTGCTGCAACTGGCAGCCCAATTATCACACCAGGTGGGGGATTTCCTCAGCAAATGTACAGTCCAATTACGCCACATCAGCCCGTTGCTTATATCCAGTCACATGCAGGAATGGTGCCACAGCCAGTGTTACAACAGCAGTATGTTGTACCTCCAGGACATGCTCCACCACGATTTATTGCTCCCGTGTCATCCCCAGCAGGGGCAGGTACTGTTCCAATGTCACAGACATACCAGGATGGAACACCTGTGCCAGTTTATGTTGCTGGTGCACCCATGCAAAGTGCTGGTACCCCCCAAGGCCAACCACAGCCCAGCCCTTCACAGCAGGGTCAGTTTATCTTCACCTCTGTCCCCCCGATGCCTGGACAGCCACAGGCTGGAGCTCCCCCTCAGGGACAAGTTACACCTGGCCCTGCCCCATATGGCCAACCAGTTGTTTACATTCCTCCAGTGGCACCTAATGCTGTACCTACTTCTACTCCGTCGTCAGTATCCTACATACCTGGCTCTTTCCATGGTGACAGGATACAATGA

Transcript

rna-Spis16597_mrna

GAAGGAAATAGATGCAGTCGCTTCCTTATGACTGCCTAGAAAGCTTTCCATGGTAAATGTTGCAATCAATGAATTAGGTTTCCACTTGAATCACTGAAATCGTCGACGCTATAGGCGTTTTATCCGCGAAAATGTGGTTGTGAAACTCATGGAATATAAAGTGCGAAGTTTCCTCGAGTATGAGTGTTCAGAAACATCGAGGCAAAGCTCGTGGAGGCAGTGGCAGgggTCAAAAAAATTTCAGACCAGGTTCTAGTGCAAGTCCTCCTCCTCAGACATTTGACTTTGCCAAATTTGAGGATGGCAACGGTACAGATATCTTCTCAAACAAGTACATGGTTTACTCTGTTACCAGCAATTTGGGTGAGACAGCCCGTGTTCAGGTTGTCAATGGTGATATCTATGAAGGAATCCTCAAAGCTGTTTCCTCCAAGTTTGAATGTTCCCTAGGGGAAGTTCATCTTgtacaacaaaagaaaagcaacggACTTGTCATTGAGGATGAACAAACTTTACCCAGCCGTGATGGTCTAATCAGCAATCTCCTGATTGCACTGAAAGATATTGTGAGTGtcaaaataaccaaaacagaGGAACCAGAGATTGCAACCTCAGTTGATTCTTTCACAGATGCAGGCATCACAAATGCTGATCAGAAGGAAACCAATGGTCAGATGAATGAGCGTGAGCTGGAGagaTGGGTTCCAGATGATCCTGACATTGGAGGGGGCTTAGAAGATAATGTCAAAgtgAATGGCTGGTCACCAGATGAGATGTTCAAAACCAATCAGGAAAAGTTTGGTGTTACATCGACATACAGTGAAGACCTGTTACAGTACACAACACCACTTCCAAAGGACAGCACTCGTGAGATGGAACtcaaagcagaacaaacagcccGTGAAATTGAGCAGTCCCATGGGCACCTGCACCGCCAAGAAGTTGATAGTGGTAAAACGGAAGAGGAACTGCATGCAGCTGTCGTCAGACCTCAAACCACAAGCACAGCTCCAAGAACACCTCAGGTGTCTTCTGAACAGTCTTCTGTAGAAGGAAAGCCACAAAGAGAAGCTGCTCCTGAAACAACTCCATCATCTGATGAGCAAAAAGCGACTGACACCAACACACCAGCAGTGCAGgcAAATGCCAAACCCACAAGTGCTGTTACTGTTAACACAGGGAACACTGTAACACAATCCTCTGGTGGTCAAAGCTTAAAGGAATCTTCCACCGAAGGACAAACAGCTTCTACAGACACTCAATCCTCTGGTTCCAAGGCAAAACAATCTGAAGTTATGAAAGatttaaaagaatttcattCCAACTTCAATCTGAAAGAAAACTCTtccaagaaggaaaaagaagggCAACAAACAGTTTCCCAAGAGGCAGATCAGGCTGAGGCTGCTGTGACTAAGACTACAACGTCATCTGGTAATGAATCTGGAGCACCATCCACCCCAGATGTGCCCAAATCAGACGAGAAAAAGGATGGGGAGGAGAGCATTCTGTTTAAGTCAAAGCTGAATCCAAATGCAAAAGAATTTAAATTCACTCCAAAGGCTCAAAAGCAAACTCCACCTCCACCACAATACATTCCAGCAGTGGTTCCTTATTCACCAACCTCTATGAGACCACCAGTGCCAGGAGGTCCTTTTCCTCTGCACCCTCCGCCGATGATGATGGTACCTTCACCACCATACTACAGAGGCAAACAGCCATTTAATAAACCTGTACGAAATCATTCATACGGAGGTGGCCGTGACCAAGTGGAATCACCACCTTCCTTCATATCGGCAGCTGCTGCAACTGGCAGCCCAATTATCACACCAGGTGGGGGATTTCCTCAGCAAATGTACAGTCCAATTACGCCACATCAGCCCGTTGCTTATATCCAGTCACATGCAGGAATGGTGCCACAGCCAGTGTTACAACAGCAGtatgTTGTACCTCCAGGACATGCTCCACCACGATTTATTGCTCCCGTGTCATCCCCAGCAGGGGCAGGTACTGTTCCAATGTCACAGACATACCAGGATGGAACACCTGTGCCAGTTTATgttgctgGTGCACCCATGCAAAGTGCTGGTACCCCCCAAGGCCAACCACAGCCCAGCCCTTCACAGCAGGGTCAGTTTATCTTCACCTCTGTCCCCCCGATGCCTGGACAGCCACAGGCTGGAGCTCCCCCTCAGGGACAAGTTACACCTGGCCCTGCCCCATATGGCCAACCAGTTGTTTACATTCCTCCAGTGGCACCTAATGCTGTACCTACTTCTACTCCGTCGTCAGTATCCTACATACCTGGCTCTTTCCATGGTGACaggatacaatgaaaaaaataaaagaagaaagaaaattgaagctcCGTTTGACTGTAGAGTCTTGCAGTCTgccttttctctttctctgtgTTATTGAAGGGAAGTCCCCACAGCAGCAAGGAGGGATTAAAAGGCAACCTTCTCTGTtgtatttaaaacaaatttgttgcaaaagcaaataaagtatttgttgg

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06741 all species →	LsmAD	LsmAD domain	Domain	Interproscan
PF14438 all species →	SM-ATX	Ataxin 2 SM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009604 all species →	Domain	LsmAD domain	Interproscan
IPR045117 all species →	Family	Ataxin2-like	Interproscan
IPR025852 all species →	Domain	Ataxin 2, SM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12854 all species →	ATAXIN 2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0010494 all species →	Cellular Component	cytoplasmic stress granule	Interproscan
GO:0034063 all species →	Biological Process	stress granule assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23625	ATXN2_2L; ataxin 2/2L	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.