Gene detail

Detailed information of PFX19161.1 in Stylophora pistillata

Genomic Location: Spis.scaffold374:305787...316211
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

TECPR2

ATGAAGAAATCACAAGATTTCGTCATTGGACGAGACACTGTTTTGGCAGAATTAGAACCACTGAGTGATCTGTTAGGCTCCCTCGTTCACAAGGCACAGTTTGGTCCCAAGAATTTGGTCGGCCATGTGTGGGACAAAACCAGAGAACATGGTGTGAAAAAGTTGTTTAACACATTGAAAGAGAGAGTGCAAGAGAATACTAAGTCAATTCCAATTGAGTACACGTGTGTGGATGTATCATTTGATGCAATTGTGCTTGGTACAAGTATAGGAGTGATCTTCTTGTACGATCGGACCTGTAGGAAGCTCTCAAGGTTGCCATCGGAGGTCACTCATGAACCAGCCAGATGTATAAAGCTCTTACCTACACACAGTTATACAGCCGTGGGATTCAACAGTGGTTTAGTGACAATTTTCGCATTTGTTCTGGCATCACAAGGGTTTGGAAAGCCTCAGACACTGCTTGTAAGCGGAGCCCATAACAGTCCAGTGACCTGCCTGGAGTGGTCCCCTGATGGTGAGCTGCTCTACACTGGAGATGCATTGGGCACAGTTTTTGTTACAGTTTCCAACTTCCACAAGGGTTTGACCCAGACAGCCATGATGTTCCAGGAAGCATCTCCCATTGTTCAGTTGTCATATTCATGGGAAGCCCTTTTAATTTCATCTGAGAAAAGAACAGTTTTATGGAATTTTAGCAATGAACAGATTACTCAGATTGGGCAGAAGGAAAGGAAAAGTCCTGGACGATTTGGAGCCCTGTTTTACCCTCCGGCTAAAGGAACTGCAGATGGCAAGTCCAAGGGATCGCTTGAAATCTACACCTCACGGCCAGGGTTGCGACTATGGACAGCTGATGTCAATGGCAAGGTTTCTGCAACGCTTATGTACAAGGGCTTGACGAACGAAAACCCTCCCGGTATTACCACATTAGATCCCCCACCTCCCTGTTTAACAAAACTCCCTAAGGATTCTCAAGTGCAGTTTGGCCCCCTGAGGCTCTATCACGGGCAATTCTTTGTCACATGGGATGTTTCTCGCCTTTGGGTCCTGGATACGTCCCCTTGTGCTCTCGTGGGTTACCATGGTAACTTAGGAGATATTGTGGACGTCAGTACGGTGGGGCATGAGATCTACGTTTTGCAGCGGGGAGGGGAGAGGCTATTGATGAAGTTGTCACTGATTCCCAAACTGGCCAACCCTTTGTTGGATGTCGTAGCGCTGTTGGAGCGAAGCCTTAAGGAAGACGAAGAGGATGGTGCAAAGCCTCACCTTGAATCAACCGTTCAACACAAGGAGCTCAAATCAGCCGAGGAAATCCCGGATGGGGAAAAAGTTTCAAAGCTTCCCTTGTGTGAAACCGAACCATCGATAGCAGAAATAGAAGCAGAAACTGAATCAGCTGCACCACAGCCTGACCCTTTCAAAAAATACCAAGAGATAAGACATCAAGATTTTGGGGAAATTGTGTTCCGGAAAAACAAAAAATCCAAGAAGAAGGCCAACAAAGGCGCTGACCCTTCGCAAAGAACAGCGGATCAGGCTCACGGTGACATCGAAGATCAACTAGCTGAAAATAACACACTAAGCGGACACCCTGACTTACCTCTCCCCCCTGACCCAGAACAGAACCGCAGTGCTGTTGTTCACCCTCCTGACCCTGCGTTAAATAGATATTCAAACATCTCGTCAGATTTCGACTCTGGTGATCGGCTGAGTGGAGAAAACCAAGACTCAGAGGGAGAGGACGGGGATACTTGTACTTCGCCTCATTTGATGGTTGTTCACGTTACCAAGGAAGGGGCGCAGGAAAAACACGAAGTCCATGATGACGTCAGCTACTCGTCGTGCGTTACAAAAGAAGACGTAAGAAGTCAAAACGACAGCGTGACCATTCAGGATAGTTGTGTGACTGAGGGTGAACTTGCTGTTGATTTCGAGGGGAACGTGACATCATTAGAAAATGCAGACACGTGTGGTACCTCTCTATCATCTGCTAACATATCCGACGAAACGCTCTCGCCTGACAACAGTTTATGTATGGATTCTGTATCTCTATCGACGAGTACGATGGTTGAAGACGGTGCTGTTATTGAAGACTCCACACTGAGCCCAGAGGACTCGCTCAGCGCTGATTACTTGCAGGACATATACTCCAATACACCTGTCAATTTTTCTGACGCAACGTTTTCGGATGCGTCTGTTGAGAAATCCTCACGCTCTAAAACCCGGCTCGGAAACACTTCCGGCCTCGGATCCGCTTCGTCGCTGAAAGAAGGAAGTGATGTTCCGATGGATTCCGAAGGTACCCCTCCTGTGTACCTTGACTCCGAGGGGGCCGAAGAGCTCAGCGACACTGCCTCTTGGTCCCTTTATCTCTCGAGAAGGACCATGAGTGATGCCGAAATAGTGAACCACGAGGATGCACCAGTTCTTGAAGGATCCTTTTCCTCCACTGGTTCTGGCTCCTCGCTGTCAAAGTCTCCTGGATCCACCAAAGAAGGTCTACGCCTTCTCGCAGACAGCTGGGCGGACTACACCCCTCCAGGGCAGGGCTACGTACAGTTTGTAGCTGTTTCAGATACTCACATTTGGTGCATAACCACCCACGAAAACATCTTTTACTGCCCTACTCACTACTCTGTTGTGAATTGGACTCAGCTCGGTGGCTCGGCAAGAATGATAGCCGTCAACAACACCGGTGATGTCATTTGGAGCGTTGATCGTAGGAATTATGCGAATGCGCGTTTTGGGGTCAGCAAGAATCACTTGACTGGCAAGAAGTGGCAGCCAGTAGAGAAGGAAATGCGCTATGTGGCTGTGGACGAAACAGCAGTTTGGGGAATAAAGTTGAACGGCGACGTTTTTGTGAGAACGAATGTCTCCAAGGAGTGTCCCACAGGAAAAGGATGGCGAACGATTCGAGTGGACTCAAGATTCACGCAAGTATCGTGTTTTGGTGGAGTGGCGTGGTTCTTGGACAGGGAAAACTTCATCCATGTCTACAAAGGAGACGTCCACTCAAATCCAGGCGGAAATGAAAACTGGGAGACACTGAATGATGTTTCTGCTAAGTGGGTTTGCCTTGGAATACAAGGGGTAGCGTGGATTGTGGATACGAAAGGCTGCATTTGGTTCACTAACGTGACCAGTGAAAATCCAATGGGTGGCACTTGGTATCAGGTTTCCCTCGGCCAATACCTGATGCAAAACCGCACCTTACTTGAAACGCTCTGGTCCTGGGTTCTACGAGATGACGTCAAGCTTTTGACTGCGAGCCCTAAAGCAGGGGTCTGGTTATTAGGGAGTGTAGGCTCTCTGCAGGCCTCGCACGGTCACTTGCTAGGGGCTCGTTGGGATCCTGTGATACCACAAGGAATTGCTCAGTCTGTGTTCTGGTCCCACTTGTCTACGGGCTCATGCAAAGGTGACAAAGGTCACGTGTGGGCTTTACAACCCAATGGGGAGCTTATTTGCTTCCAATTGGGGAACCGTCCTGTTACTGTCGAACCACCTCGTGGCAAAGTTTTAAAGCTAATTTCAGCGTCGGGTTCTAGCCTGTGGGGCGTAACGCACAACTTCAAAGTCGTGCAACGCTCAGGAATCTCGGACGCATATCCACAAGGGGTAAGCTGGCTTGAATCGAGACTTTCCCTGTTCGGTGTTGGTAAAGTTTTGCACCTCAGCTGCGGAGCACTGAGCACCTGGGCTGTTGATGACGCAGGAAATGTCTTTTTACGGATAGGCAAGGAGGACTCTTCGGACCCATCTGTTACTCAGGCGTGGATCCCAGTCGAAGGTGCTCCTCTATGTGGCTGTCGATTCGCTAAGATCGCTGTAAGCCCGTCGGATCGCGTGGTCTGGGCGGTGGATGATCGGAACAATGTTTACGCGCGCCATAATGTCACACCAAGCTTCCCTATAGGTACTGCGTGGGAAGTTGTCCCCGGCACGGGTGTGCGAGACGTGGCCATCAGCGAACACATGGTCTGGGCGATTTGTCCCAACGGGGACATCGTGTGTCGGTACGGGGTCAGCGAAGACAACTGCTTGGGGCATTACTGGAAGAAAGTCCCTGGGAATTTTGAGCTTATCTCGGTGACTCCCGATGATGAACTCTGGGCCATCGATCAGAACGGGCAGCTGTTTCTGCGCAAAACGCAGCATTTTTATGGTACCCAGTCTCCGTTTAGGCCACGAACATATAGCGCCATATTTTCTGGTGAAGAGGACTGGGAGTTTATATAA

Transcript

rna-Spis16449_mrna

ATGAAGAAATCACAAGatTTCGTCATTGGACGAGACACTGTTTTGGCAGAATTAGAACCACTGAGTGATCTGTTAGGCTCCCTCGTTCACAAGGCACAGTTTGGTCCCAAGAATTTGGTCGGCCATGTGTGGGACAAAACCAGAGAACATGGTGTGAAAAAGTTGTTTAACACATTGAAAGAGAGAGTGCAAGAGAATACTAAGTCAATTCCAATTGAGTACACGTGTGTGGATGTATCATTTGATGCAATTGTGCTTGGTACAAGTATAGGAGTGATCTTCTTGTACGATCGGACCTGTAGGAAGCTCTCAAGGTTGCCATCGGAGGTCACTCATGAACCAGCCAGATGTATAAAGCTCTTACCTACACACAGTTATACAGCCGTGGGATTCAACAGTGGTTTAGTGACAATTTTCGCATTTGTTCTGGCATCACAAGGGTTTGGAAAGCCTCAGACACTGCTTGTAAGCGGAGCCCATAACAGTCCAGTGACCTGCCTGGAGTGGTCCCCTGATGGTGAGCTGCTCTACACTGGAGATGCATTGGGCACAGTTTTTGTTACAGTTTCCAACTTCCACAAGGGTTTGACCCAGACAGCCATGATGTTCCAGGAAGCATCTCCCATTGTTCAGTTGTCATATTCATGGGAAGCCCTTTTAATTTCATCTGAGAAAAGAACagttttatggaattttagcaATGAACAGATTACTCAGATTGGgcagaaggaaaggaaaagTCCTGGACGATTTGGAGCCCTGTTTTACCCTCCGGCTAAAGGAACTGCAGATGGCAAGTCCAAGGGATCGCTTGAAATCTACACCTCACGGCCAGGGTTGCGACTATGGACAGCTGATGTCAATGGCAAGGTTTCTGCAACGCTTATGTACAAGGGCTTGACGAACGAAAACCCTCCCGGTATTACCACATTAGATCCCCCACCTCCCTGTTTAACAAAACTCCCTAAGGATTCTCAAGTGCAGTTTGGCCCCCTGAGGCTCTATCACGGGCAATTCTTTGTCACATGGGATGTTTCTCGCCTTTGGGTCCTGGATACGTCCCCTTGTGCTCTCGTGGGTTACCATGGTAACTTAGGAGATATTGTGGACGTCAGTACGGTGGGGCATGAGATCTACGTTTTGCAGCGGGGAGGGGAGAGGCTATTGATGAAGTTGTCACTGATTCCCAAACTGGCCAACCCTTTGTTGGATGTCGTAGCGCTGTTGGAGCGAAGCCTTAAGGAAGACGAAGAGGATGGTGCAAAGCCTCACCTTGAATCAACCGTTCAACACAAGGAGCTCAAATCAGCCGAGGAAATCCCGGATGGGgaaaaagtttcaaagcttcCCTTGTGTGAAACCGAACCATCGATAGCAGAAATAGAAGCAGAAACTGAATCAGCTGCACCACAGCCTGACCCTTTCAAAAAATACCAAGAGATAAGACATCAAGATTTTGGGGAAATTGTGTTccggaaaaacaaaaaatccaaGAAGAAGGCCAACAAAGGCGCTGACCCTTCGCAAAGAACAGCGGATCAGGCTCACGGTGACATCGAAGATCAACTAGCTGAAAATAACACACTAAGCGGACACCCTGACTTACCTCTCCCCCCTGACCCAGAACAGAACCGCAGTGCTGTTGTTCACCCTCCTGACCCTGCGTTAAATAGATATTCAAACATCTCGTCAGATTTCGACTCTGGTGATCGGCTGAGTGGAGAAAACCAAGACTCAGAGGGAGAGGACGGGGATACTTGTACTTCGCCTCATTTGATGGTTGTTCACGTTACCAAGGAAGGGGCGCAGGAAAAACACGAAGTCCATGATGACGTCAGCTACTCGTCGTGCGTTACAAAAGAAGACGTAAGAAGTCAAAACGACAGCGTGACCATTCAGGATAGTTGTGTGACTGAGGGTGAACTTGCTGTTGATTTCGAGGGGAACGTGACATCATTAGAAAATGCAGACACGTGTGGTACCTCTCTATCATCTGCTAACATATCCGACGAAACGCTCTCGCCTGACAACAGTTTATGTATGGATTCTGTATCTCTATCGACGAGTACGATGGTTGAAGACGGTGCTGTTATTGAAGACTCCACACTGAGCCCAGAGGACTCGCTCAGCGCTGATTACTTGCAGGACATATACTCCAATACACCTGTCAATTTTTCTGACGCAACGTTTTCGGATGCGTCTGTTGAGAAATCCTCACGCTCTAAAACCCGGCTCGGAAACACTTCCGGCCTCGGATCCGCTTCGTCGCTGAAAGAAGGAAGTGATGTTCCGATGGATTCCGAAGGTACCCCTCCTGTGTACCTTGACTCCGAGGGGGCCGAAGAGCTCAGCGACACTGCCTCTTGGTCCCTTTATCTCTCGAGAAGGACCATGAGTGATGCCGAAATAGTGAACCACGAGGATGCACCAGTTCTTGAAGGATCCTTTTCCTCCACTGGTTCTGGCTCCTCGCTGTCAAAGTCTCCTGGATCCACCAAAGAAGGTCTACGCCTTCTCGCAGACAGCTGGGCGGACTACACCCCTCCAGGGCAGGGCTACGTACAGTTTGTAGCTGTTTCAGATACTCACATTTGGTGCATAACCACCCACGAAAACATCTTTTACTGCCCTACTCACTACTCTGTTGTGAATTGGACTCAGCTCGGTGGCTCGGCAAGAATGATAGCCGTCAACAACACCGGTGATGTCATTTGGAGCGTTGATCGTAGGAATTATGCGAATGCGCGTTTTGGGGTCAGCAAGAATCACTTGACTGGCAAGAAGTGGCAGCCAGTAGAGAAGGAAATGCGCTATGTGGCTGTGGACGAAACAGCAGTTTGGGGAATAAAGTTGAACGGCGACGTTTTTGTGAGAACGAATGTCTCCAAGGAGTGTCCCACAGGAAAAGGATGGCGAACGATTCGAGTGGACTCAAGATTCACGCAAGTATCGTGTTTTGGTGGAGTGGCGTGGTTCTTGGACAGGGAAAACTTCATCCATGTCTACAAAGGAGACGTCCACTCAAATCCAGGCGGAAATGAAAACTGGGAGACACTGAATGATGTTTCTGCTAAGTGGGTTTGCCTTGGAATACAAGGGGTAGCGTGGATTGTGGATACGAAAGGCTGCATTTGGTTCACTAACGTGACCAGTGAAAATCCAATGGGTGGCACTTGGTATCAGGTTTCCCTCGGCCAATACCTGATGCAAAACCGCACCTTACTTGAAACGCTCTGGTCCTGGGTTCTACGAGATGACGTCAAGCTTTTGACTGCGAGCCCTAAAGCAGGGGTCTGGTTATTAGGGAGTGTAGGCTCTCTGCAGGCCTCGCACGGTCACTTGCTAGGGGCTCGTTGGGATCCTGTGATACCACAAGGAATTGCTCAGTCTGTGTTCTGGTCCCACTTgtctacgggctcatgcaaaGGTGACAAAGGTCACGTGTGGGCTTTACAACCCAATGGGGAGCTTATTTGCTTCCAATTGGGGAACCGTCCTGTTACTGTCGAACCACCTCGTGGCAAAGTTTTAAAGCTAATTTCAGCGTCGGGTTCTAGCCTGTGGGGCGTAACGCACAACTTCAAAGTCGTGCAACGCTCAGGAATCTCGGACGCATATCCACAAGGGGTAAGCTGGCTTGAATCGAGACTTTCCCTGTTCGGTGTTGGTAAAGTTTTGCACCTCAGCTGCGGAGCACTGAGCACCTGGGCTGTTGATGACGCAGGAAATGTCTTTTTACGGATAGGCAAGGAGGACTCTTCGGACCCATCTGTTACTCAGGCGTGGATCCCAGTCGAAGGTGCTCCTCTATGTGGCTGTCGATTCGCTAAGATCGCTGTAAGCCCGTCGGATCGCGTGGTCTGGGCGGTGGATGATCGGAACAATGTTTACGCGCGCCATAATGTCACACCAAGCTTCCCTATAGGTACTGCGTGGGAAGTTGTCCCCGGCACGGGTGTGCGAGACGTGGCCATCAGCGAACACATGGTCTGGGCGATTTGTCCCAACGGGGACATCGTGTGTCGGTACGGGGTCAGCGAAGACAACTGCTTGGGGCATTACTGGAAGAAAGTCCCTGGGAATTTTGAGCTTATCTCGGTGACTCCCGATGATGAACTCTGGGCCATCGATCAGAACGGGCAGCTGTTTCTGCGCAAAACGCAGCATTTTTATGGTACCCAGTCTCCGTTTAGGCCACGAACATATAGCGCCATATTTTCTGGTGAAGAGGACTGGGAGTTTATATAA

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF19193 all species →	Tectonin	Tectonin domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009091 all species →	Homologous_superfamily	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR006624 all species →	Repeat	Beta-propeller repeat TECPR	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23287 all species →	RUBY-EYE2-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0032527 all species →	Biological Process	protein exit from endoplasmic reticulum	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23881	TECPR2; tectonin beta-propeller repeat-containing protein 2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.