Gene detail

Detailed information of PFX19378.1 in Stylophora pistillata

Genomic Location: Spis.scaffold363:68601...72785
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

POLK

ATGGCTGCCAATATGGCGGATGACGGATGTAACTTCTACGATGAGGACGATTTCGATGATTTGGAGAACGAAGACGAATCCAACGATTGGGCTGAAATGTATATTGGAGAAGGAACTCAGTGGATAAATTATAGCAACAACCCTTCACAGAAAAATGCGCAAACGGAGGAGAATTCGAGGTATGAAAATCTCCAAGTCAAAGAAGATGTTTATGAAAACGACGACAAAGCAAAAGGCCTCTCCAGGATGGAGCTTAATGATCATAAGGCAGGCATGATGGGTTTAGATAAGCAAAAAATTAACCAGATCATATTCGAAGCGAGTAAAGGCTCTAAGTTCTATGAAAATGAATTAAAGAAAGAAAAGCAAGTGGCTGAACGGATCGCTAAACAGAACATGTCACTTGAAAAACTCACCCAGCAGCAAAGAAAAGTGGCTTTCCAGGCCATCGACCTAATTGTAGAAGAGTTGGAGAGGAAGCGTGATTTAAGCCGTACCTTTGTTCATATCGATATGGACGCTTTTTATGCTGCAGTGGAAATCTTGGACAATCCTGAATTGGGTGACAAACCTATGGCTGTGGGTGGTAACTCAATGTTGTCTACGTCAAACTACCCAGCTAGACGTTATGGTGTAAGGGCAGCCATGCCAGGGTTTATCGCCAAGAAGTTATGTCCTGAACTGATCATTGTTCCACCGCACTTTGAAAAATACAAGGAATACAGCCGCCAAGTGCAAGATATTTTAGCAGAGTATGACCCTAATTTTGCGATGGCCAGTTTAGATGAAGCATACTTGGATCTTACAGAGCATCTTACTGAGAGACACAAAGGTCAAGAAAAGAAGAGATTCTTGACATCTAAATGCAATATTCATCGAATGGTAAAGAACGAAATGCATCCAGACCTTGAACAGATAGAGGGAGAAATTGTTGAGTTTGGTACCGATGCGGAGGAAGCTGTCAGGGAGTTGCGTTTTCGAATTGAGCAGAAGACGAAACTAACAGCTAGCGCAGGAATAGCACCAAATGCCATGCTAGCAAAGATCTGCTCTGATCGTAACAAGCCGAACGGACAGTTCTATCTAAAACCAAATCGTAATGATGTCATGGAATTTATACGCAGCCTACCTATCAGAAAAATCAGCGGAATTGGGCGAGTCAGTGAACAGATGTTGAAAGCTCTTGGAATTGAGACATGTGAAGATTTATACAGGAAACGAGACTTGCTCTATCTTCTACATTCACCAATCAGCTTCAAATTCTTGATAGAAGTTTCTCTTGGTTTGGGACCCACATCCCTTACGACAGAATCGAAAAGGAAAAGTATAGGAACAGAAGAAACCTTTTCAGAGATTAGCAAACCCACGGAGCTACTGGATATGTGTGGCAAGCTTTGTCAATCACTGGCACAAGATATAAAAGGGCAAGAACTTAAAGGAAAGACTGTCACGATAAAGCTGAAAACAGTGAACTTTGAAATAAAATCTCGGTCTTCATCCACCAGTTATCCCGTTTCGACGTACGAGGAAATTTCCTTAATTGCAAAAGAGCTTCTCAAACATGAAATGAATACATGTTTTCCTGAGCCCCTAAAGTTGCGCCTCATGGGGGTACGTTTATCAAATCTTCAAGATACAAGCTCGAACTCGTCAAAAGAAGCTAAGCAGAACACTATAACAGGTTTTTTAAAGCAAAAGCAAAATGTTAAGTCCCAGGGAATGCTAGTGTCTTTTCCAACCGCCCAACAATTGAACGTAGGGGAACATTTTGGTCTCCCTTCACTGAGTCAACACTATCCAGAAGAAAGTGACGTCATGACAGGAGCATACGCTTGTCAGAGGACAGACCAGTATGGTTCCTGCCTTGCTTCTCTCTCGTCTGAGGGTGTTGCTTCAAACTCAGTTTCAAAGAAATCATCGTCACTATCTGGTTCTGTTTCAACTTCAGATTCCATTTTGTTGAAGGAACATTCTGACGATACAAATCCATCAGCAGTGTTTTGTCCTGTATGCGAATTAGAGCAAAAGTTCAAGAGAGGTCAAGATGTTATGACTGAACTTAACAGACATATAGACTTGTGCTTAAATAAAGCCACTATAAAGGAGTTGGCTTCAGAGAGAAATCCAAGACGACCATCAACTGTCGATGTGGAGATGGGGACCTCAAGAGTAAAGAGAAGAAGACAGCAGTTAACAGAAACCTCCCAGAAAGCAACCTTGCTTTCATTTTGGTCAAAATCATGA

Transcript

rna-Spis16201_mrna

ATGGCTGCCAATATGGCGGATGACGGATGTAACTTCTACGATGAGGACGATTTCGATGATTTGGAGAACGAAGACGAATCCAACGATTGGGCTGAAATGTATATTGGAGAAGGAACTCAGTGGATAAATTATAGCAACAACCCTTCACAGAAAAATGCGCAAACGGAGGAGAATTCGAGGTATGAAAATCTCCAAGTCAAAGAAGATGTTTATGAAAACGACGACAAAGCAAAAGGCCTCTCCAGGATGGAGCTTAATGATCATAAGGCAGGCATGATGGGTTTAGATAAGCAAAAAATTAACCAGATCATATTCGAAGCGAGTAAAGGCTCTAAGTtctatgaaaatgaattaaagaaagaaaagcaagtgGCTGAACGGATCGCTAAACAGAACATGTCACTTGAAAAACTCACCCAGCAGCAAAGAAAAGTGGCTTTCCAGGCCATCGACCTAATTGTAGAAGAGTTGGAGAGGAAGCGTGATTTAAGCCGTACCTTTGTTCATATCGATATGGACGCTTTTTATGCTGCAGTGGAAATCTTGGACAATCCTGAATTGGGTGACAAACCTATGGCTGTGGGTGGTAACTCAATGTTGTCTACGTCAAACTACCCAGCTAGACGTTATGGTGTAAGGGCAGCCATGCCAGGGTTTATCGCCAAGAAGTTATGTCCTGAACTGATCATTGTTCCACCGCACTTTGAAAAATACAAGGAATACAGCCGCCAAGTGCAAGATATTTTAGCAGAGTATGACCCTAATTTTGCGATGGCCAGTTTAGATGAAGCATACTTGGATCTTACAGAGCATCTTACTGAGAGACACAAAGGTCAAGAAAAGAAGAGATTCTTGACATCTAAATGCAATATTCATCGAATGGTAAAGAACGAAATGCATCCAGACCTTGAACAGATAGAGGGAGAAATTGTTGAGTTTGGTACCGATGCGGAGGAAGCTGTCAGGGAGTTGCGTTTTCGAATTGAGCAGAAGACGAAACTAACAGCTAGCGCAGGAATAGCACCAAATGCCATGCTAGCAAAGATCTGCTCTGATCGTAACAAGCCGAACGGACAGTTCTATCTAAAACCAAATCGTAATGATGTCATGGAATTTATACGCAGCCTACCTATCAGAAAAATCAGCGGAATTGGGCGAGTCAGTGAACAGATGTTGAAAGCTCTTGGAATTGAGACATGTGAAGATTTATACAGGAAACGAGACTTGCTCTATCTTCTACATTCACCAATCAGCTTCAAATTCTTGATAGAAGTTTCTCTTGGTTTGGGACCCACATCCCTTACGACAGAATCGAAAAGGAAAAGTATAGGAACAGAAGAAACCTTTTCAGAGATTAGCAAACCCACGGAGCTACTGGATATGTGTGGCAAGCTTTGTCAATCACTGGCACAAGATATAAAAGGGCAAGAACTTAAAGGAAAGACTGTCACGATAAAGCTGAAAACAgtgaactttgaaataaaatctcGGTCTTCATCCACCAGTTATCCCGTTTCGACGTACGAGGAAATTTCCTTAATTGCAAAAGAGCTTCTCAAACATGAAATGAATACATGTTTTCCTGAGCCCCTAAAGTTGCGCCTCATGGGGGTACGTTTATCAAATCTTCAAGATACAAGCTCGAACTCGTCAAAAGAAGCTAAGCAGAACACTATAACAGGTTTTttaaagcaaaagcaaaatgttAAGTCCCAGGGAATGCTAGTGTCTTTTCCAACCGCCCAACAATTGAACGTAGGGGAACATTTTGGTCTCCCTTCACTGAGTCAACACTATCCAGAAGAAAGTGACGTCATGACAGGAGCATACGCTTGTCAGAGGACAGACCAGTATGGTTCCTGCCTTGCTTCTCTCTCGTCTGAGGGTGTTGCTTCAAACTCAGTTTCAAAGAAATCATCGTCACTATCTGGTTCTGTTTCAACTTCAGATTCCATTTTGTTGAAGGAACATTCTGACGATACAAATCCATCAGCAGTGTTTTGTCCTGTATGCGAATTAGAGCAAAAGTTCAAGAGAGGTCAAGATGTTATGACTGAACTTAACAGACATATAGACTTGTGCTTAAATAAAGCCACTATAAAGGAGTTGGCTTCAGAGAGAAATCCAAGACGACCATCAACTGTCGATGTGGAGATGGGGACCTCAAGAGTAAAGAGAAGAAGACAGCAGTTAACAGAAACCTCCCAGAAAGCAACCTTGCtttcattttggtcaaaatcatgaaaaatttgaaattgtggCAAAATTACACATAAACAGACTTATGAATAACTTTTGCACTTGACACGTATTGACCTCAGTTGTCAGGATCTCATGCGTATGAACTGTTATCATTGCGGCAGTTAACAACTAGTTTAGCTTCTCGGCAAACAGGAGTAACCCGCCAAGTtaagaatgtctatccattgAATAGATAAAGGTTGTGCATTACAATAAGCGACTGAGTTGCCAGAAAAATCACTCTTGATTTTGTCGTCTAATGAATTTAAAGTTCCAGTGGAAACTCCTTTCTATaactttaaggaaaattttccaatttgGAGAGCATTGGTTTTCGGACGAGATGCGACGACCTATGTCGTGATTACTTTGAAAATTAGAAGTGTTCAGTGAGATGATTCTTTTGAACGCGAGAATTGCCGCAACTTTAGGCTGACAACAACAACGTTTCATTTACTCAACATAAATCAATACAATTAAattctaataattctttgatTTAACAATATTGTAGATTGGTTA

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006695 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11799 all species →	IMS_C	impB/mucB/samB family C-terminal domain	Domain	Interproscan
PF11798 all species →	IMS_HHH	IMS family HHH motif	Motif	Interproscan
PF00817 all species →	IMS	impB/mucB/samB family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036775 all species →	Homologous_superfamily	DNA polymerase, Y-family, little finger domain superfamily	Interproscan
IPR022880 all species →	Family	DNA polymerase IV	Interproscan
IPR017961 all species →	Domain	DNA polymerase, Y-family, little finger domain	Interproscan
IPR050116 all species →	Family	DNA polymerase type-Y	Interproscan
IPR024728 all species →	Conserved_site	DNA polymerase type-Y, HhH motif	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR001126 all species →	Domain	UmuC domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11076 all species →	DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0042276 all species →	Biological Process	error-prone translesion synthesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03511	POLK; DNA polymerase kappa	EC:2.7.7.7	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.