Gene detail

Detailed information of PFX19500.1 in Stylophora pistillata

Genomic Location: Spis.scaffold358:168548...179464
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis16095_mrna

GTTTTTCTTGTGCAACGCAAGGCAAGGCAATTTGGAATCTGGCTGTCAGCCGAAGATGTCTTCACCTACCCAAGATCAGGAGAGTGATGCTTTGGCCCTGTTAGCTCTAAAATCAGGCGCTATTAATCCTATGAAACAAATGTGGGCCGGTGTCAACACTGTGACTCCAATAGCTAAACTTGAAGGTCGCGAGTTCGAATATTTGGTTCGGCAGAGTCGGATTATCATCGGACGAAACAGCAGTCTTGGGAGCGTAGACGTCAATATGGGCCATTCCAGTTTCGTTTCGAGGAAGCACTTGcagataaaatttgaaaatcaggAATTCTATCTCAGCTGCAATGGGAAGAACGGAATATTTGTTGACGGTGTTTTCCATCGACGAGGTGCTCCTCCACTGAAACTACCCTACGTTTGTGTACTACGATTTCCATCCACGAATGTGAAAGTTCGTTTCACGTCGTTGGTTGGTGACAACACTCCGAAGCGCGTACCGAGTCCcccaagaacaaaagttttACCACCTCTGCGCATAAACATCCCGCAATCAGATTCTAACTTCGCCTCTCCTATTCCATCTCCAACAGGAACTATAAGTGTGCCAAACTCCTGTCCTACTAGTCCCCGTGGAGATGCCAATCACACCTATGCTCCAAACTTGCATGCTGTGGCAGAGTTAGCTGCACAAGACGTCCAAGCTTCTACAGAGGATGACAAACCCAACCCCCCTGGAGGGGAGGCAGGCAGCAAAGATGACGGCAAGCCACCCTTCTCATACGCTCAGTTGATAGTTCAAGCAATATTATCTGCGCATGATAAGCAACTAACTTTGAGTGGTATCTACACTCATATCACCAAAAACTACCCTTATTATCGCAGTGCTGACAAAGGCTGGCAGAATTCCATTCGTCATAACCTATCATTGAACCGCTATTTTGTGAAAGTACCACGTGCACAGGATGAACCAGGAAAAGGCTCCTTCTGGCGGATTGACCCATCATGTGAGCAGAAGCTAGCAGAGCAAGCATTCCGGAAACGTCGACAGCGAGGTGTACCATGTTTCAGACCACCTTTCTCTCAACTGTCTTGCAGGTCAGCACCAGCATCTCCCACTCATGGTCTTCAGTTTCATGCTCCCTCTGCTCCAGTGACTCATGTACCACGAGAGAACTCCCCAACCAAAACGGTGACCCAGGCAGTTGATGCTACAGGATCTCAAGCCAAACCAACCCCTACCTCACCTCCTATCATTCCAGCATCTGGACTTCCACCTCCTGTGCCCTCTTTACCTCCAACAGCCCTCAAACAATCAGCCGCATTACAGGCAATTGCTGCACAAATGGCAGGAGCTGCTCTGCCTGTCAGCGTGATCAAGTCTTCTTTGGAGGCTGTGAAGGAAGGGGATGGAGCTGAGTCTGAGAAGAATGGATTTTCTCAGTCGTCAGGAGATGAGTCGCCTGTAGAGAACACTCTTCAACCAGATGCAAAAACAGCTGGCAACAAACCTGTGATCTCTACTTTAGTAAACCCAATACAACAACCAACCCAACAACAAGTACAAAAACTAcaacaagataaaaaacaacACCAATTGCCACAACAGCAGCAGATTCCTCTTCAGTTTTTAGCAGGAGCAGCTGCTCCTAGTGCAGgtGGCTTGCTCACTCCCATTCCTACACCAACAAATGTCTCTCCAACTGGCACTCAGGATATGTCAGTCAAACCACAGATCCCAAAAGTTCCCAACCCTCTGCCACTTCCTATCGTAACAACTGGAGCACTCACTCCTGACTCCTCTCCTCTTGGGGTGTTGTCTCCAGCTGCCACTACAGctgcagtttccatggcaatgaATGGTGCCAAGCGATCATTAAGCACAAGTCAACCATTGACCAACAGTGAAGAAGAACATGAAATAAAGCGTCAAAAATTATCTCAGCCAAGTGCTGCATTTCAGGGTAACCATTCCCAACCAGACTGCTGATAAAGGAAAGCTCTAGCCTTCACACACATCAACTTTCTCAAGGTGTTAAGGCTGCTAAGTTACTGCCATTATTGTTGTGTACAGTTAGTAGTTAAGGCACCAATCATTTATCGCAGACATAGCGACTGACCAGAAATCAGAAATCATCAGATGAGGAGGTGTTTGACATGTTAACATACACTTGACAGGACCAGGTGTATTCTTTAAACAACAGTTTTTTTCCTGATTTCATGCTTATAAAGTTGTGAAATGTGTTTTGCAAAGTGTGAAAGATGAAAGCTACCAAGCGTCATGGCACTAGACATCGTGAGTGGACTAGTGGTGAATTTTGGGAACCTGCTTGTTGGTCTGAGGTGAAAAAACAATGGGCACTGGACTAAGTGATGTCTTGTGCAGAGAAACAAATGTTCTGTTTAACTGGTATCATTTATTAGCATGCAGAGCACTTCAAAGGGTGAGAAGTTAAAGATCAGAATGAACAAGTTAGGATTGTACAATACCTAAGCATGTGTACAGATGCCATTTTTCTGTTGAGAGTGGAATGGTTGTCTCTAAGTGGGCTGGATCTACAAAACATACAATGAAGTTTATATCGGGATATATCCACTGAGATGCGTGAATAATGTATGCAACCACCTTACAACATTACAAAGCTGCAGCACATTGTGTGTTGGGCTTTCAACATGTTTTTTTGGGCTTCGTTGCTGATCAGAATACTGGTATTCTTATAAATTATCAGGGAAATGTGTTTAAATGTGAACATTTCATATGAGTATGCTTAGTTCTTACCCTGTCAAATGGTAATTATAATTTAGCTGTTCTTAAATACTTTGAAAGTGTTTCATTCTTGAAAGACTGGGTTTTGCTCTCAAGGAAGTTATTAATGTAAGGCCTAGCAGGATGTATTGACAGAATTGACAGTGAAGAAAGCCAAAACAGTTTCAGGTGTTATCTGTGCAAAGTTGTAGCTATTTGGTCTTCATTAAATCTTCCTATGTCCCATGGTGcaatgttcagttttttttagagCTTGCAAATAATTCATGCTGTTGCTGAGTTCAGGCTGAAAAGATCAAGGCAGGGTTGGCATTTCTCTCTCAGGTGCATGAAtgctttatttcttcttctgtAAGTTAATCACTGAATTCTGTTACAACTGAAGTATTGAGTAGAAAATGAAGGTTCATACTTTTTTTGCTGTGAGGAGCTGTCCTATAATGAAGCAGAATTGACATTTTAAGTTTTAGTAATATTTGGAtcttacaggaaaaaaaaaactgatacaTATTTCCTGAAAGGCCAAAACAAGAGAGGAAATTTAAATGTGTTATTACAATCATGATAGATTTATGTTAAgctcttcttttttaaaacaaatttctatGAGTGTCCCCAGAAACCTTTTCattaaattattgaattaagAATTGTTTCCCATGGAAAAGAACTATCATAGGGCAACAACCATAGCAGATCATTATTAACTAAAACATTATTTCACAATTCATCTTTCACCATGTGAGTCATGAAAAAGTCAGTGTGATGATAATACAGCATTATATTTGTTCAGTAAGGTTGGAGTAGCATAGATATGTTTTAAGGGTCACAGCAACACTCATCCATCAAATTGAACTCCATTGTtataaaaattgcaaattgaaattataatttttctatGGCCTCTTGGATCCCAACTTAGATGTTGTACAAATGGTGGCAACTCTCTATCAGTTAGTGACGCACATACATGAATGTCAGTCAGATTATTGTTGTAAGGTATATTTAAGTTATCATACTTTTAATAATAGTAGATTGGTACCTAGGGTGGCAAGATGGTCAAGGAACTTCTAGTAGTGTTAAAAATGCCACGATTACTCATGGAAAATTGTCGGTCAAAGGTGATGATCACTTTGTGGGGTCAGCAGTTGAAGATCAGattaagaattttattttctcctccAGGTTCTCAACATCTCCTTCAGAACAAGTTTATTGAAGTTTGTGTTATTTTAAGTAAACATCTTTCTAAGTTTCTCCCTGTTCTCACTGCCTTCTTACGGAATAGAATTTGtgtgaaaaagttatttttaaatctcCTTGGTAAATGGTGGAGTGTAGTTTCCAAGTCTTGTTGAGTAATGTGAAATTGTCAGAAGCAGTATCCTTTTCCTATTAAgttttgatgtaatttttttatctcaaaaatgaagaaaagattTTAATGAGTTTTCTAGTAAATGCCACAACTACTCTTGTCAGCCAGTCTCTCAGTATTTTGGGTACTCAAACAAACCCCAATAgttattattgttaaaataatttaaatttgaaatcaggTATTACAACTTATGGAAAGTTCAGGGCCAAAGTTGTTTCTTTGACAAAATTTAAACAGGATTCTCTACCATGGATTGTCAAGCCTTAATGGTGGACTGATAAATTATTAAACTTCGTCTGTCTGGAAGAGTTATTTGTGAAGTATGAGTTAACTGATCATTAAATGAACCTTTTGAAGGTGAAAATGCGTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00250 all species →	Forkhead	Forkhead domain	Domain	Interproscan
PF00498 all species →	FHA	FHA domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000253 all species →	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR001766 all species →	Domain	Fork head domain	Interproscan
IPR018122 all species →	Conserved_site	Fork head domain conserved site1	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR030456 all species →	Conserved_site	Fork head domain conserved site 2	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45881 all species →	CHECKPOINT SUPPRESSOR 1-LIKE, ISOFORM A-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09404	FOXK; forkhead box protein K	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.