Gene detail

Detailed information of PFX19550.1 in Stylophora pistillata

Genomic Location: Spis.scaffold355:8373...19193
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis16023_mrna

ATGGTCAACTCATTCTGGAGAAGAGACACAGCCAAGTTTGTCTTGTTACAAGTTCTTGTTACCAATTCTCTATTTTGTCTCTCATCAGTCACGGGTGGtgccgcaaaatgtaataccAAAACAGTTATACCTGAAGTTAATATCTCCTCAAGTCCGCCAGACCGCACACAACCTATCGGAGCAGCCATAAGTCTGATTTGTGAAGCGAGGTCAAGGGCTGCTGACAAATTATATCCCAGGAGATTCGTCAAGTTTATTCAGTGGTATGATCCTAATGGGACGCCAATAGGAGTCAAATGCCAGCCTAAGCAACCACTAAATAAACTGAGTTGTCCGTTACTTCTTAAGAATCTGACTGAAGAAAACTTTGGGAACTACACTTGTGAAGCAGAAAATGACTATGCTGGATACTGCAGGAGAAAATCAATCGAAATTCGTCGTAAAGTAAACTTAAGTTCGCCTGAGACAACAAAGGCGcctcgttttctttttcctgagaTTGCTGAAAACCCAATGAACCAAAGCGTTTTCATTGGCTCCAATGTAACTTTCAACTGCACTGCCACGGGTATTCCTACACCAGCCATCTCATGGATGAAGAACAACAATTCCTCTGACGTAACATCCAATGTGAGGGCAAATGTCCAAGGCGATAAAAACAATCACAGTCGGCTGATAATAACGGAAGTAAAGAAGGAAGATAGTGGTAGATATCAGTGCGTTGCAACCAACAGTGCTGGTAAGAGGACATCGTCAGAGGCGTTCTTGCACACAGAAGACTTGGAAAAGGTTAGTCCGCCTGAGACCACAAATGCgcctcattttctttttcctgagaTTGCTGAAAACCCAATGAACCAAAGCGTTTTCATTGGCTCCAATGTAACTTTCAACTGCACTGCCACGGGTATTCCTACACCAGCCATCTCATGGATGAAGAACAACAATTCCTCTGAGGTAACATCCAATGTGAGGGCAAATGTCCAAGGCGATAAAAACAATCACAGTCGGCTGATAATAACGGAAGTAAAGAAGGAAGATAGTGGTAGATATCAGTGCGTTGCAACCAACAGTGCTGGTAAGAGGACATCGTCAGAGGCGTTCTTGCACACAGAAGACTTGGAAAGAAACAAGCCAGAACCGAAGGAGAGACGAGAATTGACGATACCACAGCTTTACCAGAGCTCTACCATGACAAAGAAGACATCCATAAATCGAAGCGGCTGGAAGCAGAAGAGTATAAAAACTCCGAGCTCGCTCAAGAAGATGAGCTACCAACTCTACCGAAACACCACCTTGGGGAATAGCTTGCAAGAGAGTTTGGACGAGTTGATACAGTCACAACAGATAAGCCCCCAGCTAGCTCTACAGGTGCTACTACAGTTTGATAAAGCTATTAACCATTACCTCTCCAATAAAGtcaaaagcaaaatttcttttaagGGTCACTTGAACACATATAGATTTTGTGATAATGTTTGGACCTTTGTGCTCAATAAAGTAGAATTTCGAGAAGTAGGAGAACTTGTCCAGGTGGACAAAGTGAAAGTAGTGGCATGTGATGGAAAAGCATCAGCAGCAGATACTGGAGGTTCCTGATGCTGACTCAACATTTCCTGATCTTTGCACTGAAAACATAGAAGTGACAACTGTTCCATAATGATAAGTTTTGTTCGCTTTAACCTTCAAAGCAACTTTCACAAGCAGCCGTAGCAGGGCTTCAAGCGTCTGGTTACACTAGGCTTTTGTCAACAGCATTAACATTGCAAAGTCAACAAGAAATGTGAATTAGATTTAGTCTTTGTAACTAGTAAAAGTTAAAACTTAGTGCAGGATCAAGTTTACTAGAGCTTGTTTGTTATAGTTTTCAGTTCCAACATAAATTCTGAAGGTTTATTCTTTTAGTTAAAAGTAGCATTGAACACAGCAGAAAGGAGATTCCGGTCAAGAGTGTGAATTATACTAAAATCATTAAGTTTTATATGTCACTTGTTACATTAAATAAACACGTTACTAGTTAACTTTTTCCAGACACAAACTATGTCAATTCATATACAACCAATTTACATGAGTCTCCAAAGGTGGGTATAAAAGTGTACAATAAAGTTTAACAATTAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02268 all species →	TFIIA_gamma_N	Transcription initiation factor IIA, gamma subunit, helical domain	Domain	Interproscan
PF02751 all species →	TFIIA_gamma_C	Transcription initiation factor IIA, gamma subunit	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015872 all species →	Domain	Transcription initiation factor IIA, gamma subunit, N-terminal	Interproscan
IPR009088 all species →	Homologous_superfamily	Transcription factor IIA, beta-barrel	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR015871 all species →	Domain	Transcription initiation factor IIA, gamma subunit, C-terminal	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR009083 all species →	Homologous_superfamily	Transcription factor IIA, alpha-helical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44170 all species →	PROTEIN SIDEKICK	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005672 all species →	Cellular Component	transcription factor TFIIA complex	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX19550.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.