Gene detail

Detailed information of PFX19809.1 in Stylophora pistillata

Genomic Location: Spis.scaffold343:55416...64836
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ctdp1

ATGGCGGACAAAAAGACAAGGGAGGTTGTTATTTCCACGTCTTCGTCTGCAAAGCTGTTACGATGGCGAGTTTGTCCTGGCTCAGAAGTTAGAGAAGGGAGTGTTCTTTGTTTCTATGAAATTGTTGGTGGCGTGGATCAAACTGGATCTTTTATAACTCAGCCGAAACTCAAATCAGCTTTTACTGGTAAAGTCCGTAAATTGCTGGTCGCTGAGGGAGAAATCGTAGCAGCCAGAGCACCAGTCTTGTTGATAGATGAAGCAACAGAGTGTGAACATGGGATGGTCATGAAGGATTTATGTTGTGACTGTGGTGCTGATCTCAGAAAACTTAATGAGGAGAAAGATGAGCCTTCTTCCCCAACTTTGGCATCTGTGCCAATCATACACAACATCCCTGAACTAAAAGTGAGCCAAGAGAAAGCAGAAGCTTTGGGCAAAAAGGACAAGGAGCGACTCCTTCAAACTCGCAAATTGTCCCTTGTAGTGGATCTGGACCAGACCCTCATTCACACAACTATAGAGCTGATACCTGAGGATATGGAGGACGTCCATCACTTTCAACTGCCTGGTTATCCTGCATGGTACCACACCAAGATCAGGCCAGGAGCTGTGAACTTCCTGAATAGTGTATCCAGTCTCTTTGAGCTGCACATCTTCACCATGGGTTCTAGAATGTATGCACACACTATTGCTGGAATGTTGGACCCTGGTGGAAAACTGTTTGCTCACAGAATTCGCTCAAGGGACGAGTGCTTCAACCCGTTTTCCAAATCGCGTGACTTGAGGGCACTATTTCCTAGCGGTGATAACATGGTTTGCTTAATAGATGATCGGGAAGATGTTTGGAATTTTGCCGCAAACTTGATTCGCGTTAAACCTTACCAGTTTTTTAAAGGAGTAGGGGATATTAATGCCCCACCTGGGGGATCTGTTCCAGTCACAGAAGATATCAATCCCCCCGGAAATCCTGGTGATCAAATTGAAACTACGGAGGGTGATGCGAAAGTCGAAGAGTCGAATTCTCGGGAGGACAACGAAGGTGATGTTACTGAGCAGAAGAAAAATGATGCAGTGTTTGACGACAATGGAGAGACTAAACAAAAAGTTGCCAATGTGGAGACAAAGGAAATTCACGAATTAGTTGAAGATGTGCAAATTTCCACGGATAGCAATGAGCCTGATGTCGAAGAGAAGGAACAGAGCAAAATTGAAAAGGCAAAGATCACTGAAAAAGCAGTTAAAGAAAGAGAGACATCATTGAGAGTAGTGGAAAACGGAGGAGGTGATAGTGCAAGCAATGAAACTGTAAAAGATGAGTCAACCGAAATCCAAACTTCGAGTGAAAATACGAGAAACGGAAAACACGACACCGATAGAAAGGCTCAAGATGATTCAGAGCAGCAACCATCTGATGAAAGTGTTAGCACGTCAAGTAAAACTTTATTGAAAAGTGAAGGAGACCAAACAAAAATCAAGAAATCAAGGCAGCAAGTCTACGAGTTTGGTGATGGGGACGACGATTACCTCCTGCACCTGGAAGACATTTTACGTCGTATACATGATGCATATTACAAAACTGTAGAAAGCATTCAATCGCAGGCTCCGGAGGAGGTCAAAAACAATCCTAACATCGTAAAATATTGTACTCCAGGAACATTGACACCGGATACCAAGCTGATAGTGACCGAACTACGCCGAGATGTACTTCGTGGAGCTAATGTAGTCTTTACTGGAGTAATTCCTACATCGACGAAACAAGAAGACAGTCAACCGTGGCGCGTTGCATGCGCCCTGGGTGCTAGAGTTAATAATGTGATTATTACACCCAAAGATACAAACTGTGATAGTGACGTAACCACTCACGTGATCGCGGGTCGGTTAGGGACGGAGAAATCGTACCGAGCGGTAAAATCCCGCGGGGTAAAGCTAGTGAATCCAGGTTGGTTATTCTGCTGTTTTGAACGATGGGAGAAGGTGGATGAGCGTTTATTTCCAGTCGAAGGCTTGGAGAAATACAAGCAACAGGTTCGGGATCATAGCACACCTCGCGGGACTCCTGGGGAAACTACAGACTCGAGTGCGGTTGAAAAAGTGATTTTGGACTTGAATGTTTTTGATAAGGAAAATGTGGCCGCCAAATCAAGATCTGATTCGGCAAGTAGTGCAGATCTTCTTATGTCTACCTTGAACCCATTATTATCGTTTTCGCCTTCGGAGGTTGAAGCTATGGACAAAGAAGTGGAGGATCTTATGAACGACAGCGACGGGGAAAGCGATTTGATAGGAAGTGTGTCAGAATCGAGCAGTTCTCCTGATCCCGAAAAATCAGAATCAACGAGTAAGCGAAAGCGAGAGAACGAAAGAGACTCCCAGGAGGATGAGAATGAGTTGGCAAGCAAGAAAGTGAAACTTGATGATGATGATGACGACAAACAAGACGAAGGCGATGAAAAAATAGATTGTGATGAACTTTCGCGCAGCCCTGATTCTGACGATCATTACACTCGCCGCTCTACACCAAGTGACGATGAAGATGATGGTGATGATGATGATGATGATGATGATGATGATATGGCGGCTATGTTAGATGCGGAGCTGTCTCATTCGGAAGCCGCAGGTTTCGCCCATGAAGCATTTCGCCCAGACCTAAACGCGTTTCGCTCAAACCTAGACCCAGACCATAATTGA

Transcript

rna-Spis15742_mrna

atggcggacaaAAAGACAAGGGAGGTTGTTATTTCCACGTCTTCGTCTGCAAAGCTGTTACGATGGCGAGTTTGTCCTGGCTCAGAAGTTAGAGAAGGGAGTGTTCTTTGTTTCTATGAAATTGTTGGTGGCGTGGATCAAACTGGATCTTTTATAACTCAGCCGAAACTCAAATCAGCTTTTACTGGTAAAGTCCGTAAATTGCTGGTCGCTGAGGGAGAAATCGTAGCAGCCAGAGCACCAGTCTTGTTGATAGATGAAGCAACAGAGTGTGAACATGGGATGGTCATGAAGGATTTATGTTGTGACTGTGGTGCTGATCTCAGAAAACTTAATGAGGAGAAAGATGAGCCTTCTTCCCCAACTTTGGCATCTGTGCCAATCATACACAACATCCCTGAACTAAAAGTGAGCCAAGAGAAAGCAGAAGCTTTGGGCAAAAAGGACAAGGAGCGACTCCTTCAAACTCGCAAATTGTCCCTTGTAGTGGATCTGGACCAGACCCTCATTCACACAACTATAGAGCTGATACCTGAGGATATGGAGGACGTCCATCACTTTCAACTGCCTGGTTATCCTGCATGGTACCACACCAAGATCAGGCCAGGAGCTGTGAACTTCCTGAATAGTGTATCCAGTCTCTTTGAGCTGCACATCTTCACCATGGGTTCTAGAATGTATGCACACACTATTGCTGGAATGTTGGACCCTGGTGGAAAACTGTTTGCTCACAGAATTCGCTCAAGGGACGAGTGCTTCAACCCGTTTTCCAAATCGCGTGACTTGAGGGCACTATTTCCTAGCGGTGATAACATGGTTTGCTTAATAGATGATCGGGAAGATGTTTGGAATTTTGCCGCAAACTTGATTCGCGTTAAACCTTACCAGTTTTTTAAAGGAGTAGGGGATATTAATGCCCCACCTGGGGGATCTGTTCCAGTCACAGAAGATATCAATCCCCCCGGAAATCCTGGTGATCAAATTGAAACTACGGAGGGTGATGCGAAAGTCGAAGAGTCGAATTCTCGGGAGGACAACGAAGGTGATGTTACTGAGCAGAAGAAAAATGATGCAGTGTTTGACGACAATGGAGAGACTAAACAAAAAGTTGCCAATGTGGAGACAAAGGAAATTCACGAATTAGTTGAAGATGTGCAAATTTCCACGGATAGCAATGAGCCTGATGTCGAAGAGAAGGAACAGAGCAAAATTGAAAAGGCAAAGATCACTGAAAAAGCAGTTAAAGAAAGAGAGACATCATTGAGAGTAGTGGAAAACGGAGGAGGTGATAGTGCAAGCAATGAAACTGTAAAAGATGAGTCAACCGAAATCCAAACTTCGAGTGAAAATACGAGAAACGGAAAACACGACACCGATAGAAAGGCTCAAGATGATTCAGAGCAGCAACCATCTGATGAAAGTGTTAGCACGTCAAGTAAAACTTTATTGAAAAGTGAAGGAGACCaaacaaaaatcaagaaatcaagGCAGCAAGTCTACGAGTTTGGTGATGGGGACGACGATTACCTCCTGCACCTGGAAGACATTTTACGTCGTATACATGATGCATATTACAAAACTGTAGAAAGCATTCAATCGCAGGCTCCGGAGGAGGTCAAAAACAATCCTAACATCGTAAAATATTGTACTCCAGGAACATTGACACCGGATACCAAGCTGATAGTGACCGAACTACGCCGAGATGTACTTCGTGGAGCTAATGTAGTCTTTACTGGAGTAATTCCTACATCGACGAAACAAGAAGACAGTCAACCGTGGCGCGTTGCATGCGCCCTGGGTGCTAGAGTTAATAATGTGATTATTACACCCAAAGATACAAACTGTGATAGTGACGTAACCACTCACGTGATCGCGGGTCGGTTAGGGACGGAGAAATCGTACCGAGCGGTAAAATCCCGCGGGGTAAAGCTAGTGAATCCAGGTTGGTTATTCTGCTGTTTTGAACGATGGGAGAAGGTGGATGAGCGTTTATTTCCAGTCGAAGGCTTGGAGAAATACAAGCAACAGGTTCGGGATCATAGCACACCTCGCGGGACTCCTGGGGAAACTACAGACTCGAGTGCGGTTGAAAAAGTGATTTTGGACTTGAATGTTTTTGATAAGGAAAATGTGGCCGCCAAATCAAGATCTGATTCGGCAAGTAGTGCAGATCTTCTTATGTCTACCTTGAACCCATTATTATCGTTTTCGCCTTCGGAGGTTGAAGCTATGGACAAAGAAGTGGAGGATCTTATGAACGACAGCGACGGGGAAAGCGATTTGATAGGAAGTGTGTCAGAATCGAGCAGTTCTCCTGATCCCGAAAAATCAGAATCAACGAGTAAGCGAAAGCGAGAGAACGAAAGAGACTCCCAGGAGGATGAGAATGAGTTGGCAAGCAAGAAAGTGAaacttgatgatgatgatgacgacaaACAAGACGAAGGCGATGAAAAAATAGATTGTGATGAACTTTCGCGCAGCCCTGATTCTGACGATCATTACACTCGCCGCTCTACACCAAGTGACGATGaagatgatggtgatgatgatgatgatgatgatgatgatgatatggCGGCTATGTTAGATGCGGAGCTGTCTCATTCGGAAGCCGCAGGTTTCGCCCATGAAGCATTTCGCCCAGACCTAAACGCGTTTCGCTCAAACCTAGACCCAGACCATAATTGAAAGAACTACGTGCCCAGATTAGGAATCTCTGATCCGACTAGAATTATTTCCGACAAGACACGTCGAGAGTCGAGATTCGTAAGAAATACTTAAGCTTATATACTTTGCCTCGATTATTGCCTCGAACCAAACCAGACCAAGCTTTTTATCCACTGAAGTAAACTCAAACATATTTGATTGTCTGAGTTGACAGCATCTccaagtgagaaaaaaaatgcctgTTGAAGTTGCAAGCACGAACCGAACCGAACCGGCTCAAATTCAAAATAGACGACCGAAACTCCATCCCAGGCTCTTGGCTGTTGCTTGGTAACGAACACGAACGATTTCTTCTCCTTGCAAGTGCAAAGCGCTAGCAAAGgcaaaatttcttgaaaacaaaaacattatcaGACTGTAAGACAAGTAAgttaaatgtttgatttgaaaaaaaatacattcccTTTTTTTGTGGATTTAATTAGCGATTCACGTTCactttattttgttctttctaTAAATTGTTTGTGAAACCATTTTCGTTCTGGGCGAAACGATATGGGCGAAACTCGTTACTTCTATGAAGagcattttttgattgattgtcGAAAGTAATGCGGAGTTTCACTGGGTTTGCTTtgcttcgctctgtgattggtccaaataCGTCACGCCACtcgctcaaccaatcaaatgcaaaacattGCGCCCGCGTTTCCCGCGCTTCGGCCAGTTTcgttggttttactttgagttttcattgccCCTAAGGGcagttttcctttcttttgattagCTGTAGTGATCACCCTGATTTTGGTTTCCGACACTCAACGGAAAACCGCTCTTAAGGAatgcattgttgttgtttgtttttttagccTCAccacgctttttttttttattctagagAACTCACACCACTTTCTCAGCCAATCTGATGTCggcaaaactaaaacaatagcTCTTCCACACGATGACgtcatttattgaaaattcgCCTCAAGCCTCGTTCACACAAAAACTTTTTGAGCGTCCGCTTTTTCCTCCACGCTAGGTTTTGTAGCTAAGATTGATTGGTGCCTACAGGAAAAATCGATATTTTTATCTGAGGATGTAGTGGTACTACATTTCGATCTGTGTGCTGTAAACCGTACCATGAATGTTGCACAATCATCAAACGTAAACGTTCCCGCAGAGCGTAAAGAAAGAGACTTACTCATCACAgaaatatgtatattttaagTTACCCAGTCATTCCACAAGAAGTTTCACGGATATCCCTGAACTAACTTTTACGTCTTCAATGTTTTCAGTGTAAAATGTATGTCGTACAAACTTTTCGAAGAGTGAGT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03031 all species →	NIF	NLI interacting factor-like phosphatase	Family	Interproscan
PF00533 all species →	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011947 all species →	Domain	FCP1-like phosphatase, phosphatase domain	Interproscan
IPR004274 all species →	Domain	FCP1 homology domain	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR039189 all species →	Family	CTD phosphatase Fcp1	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23081 all species →	RNA POLYMERASE II CTD PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004721 all species →	Molecular Function	phosphoprotein phosphatase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008420 all species →	Molecular Function	RNA polymerase II CTD heptapeptide repeat phosphatase activity	Interproscan
GO:0070940 all species →	Biological Process	obsolete dephosphorylation of RNA polymerase II C-terminal domain	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15732	CTDP1, FCP1; RNA polymerase II subunit A C-terminal domain phosphatase	EC:3.1.3.16	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.