Gene detail

Detailed information of PFX20095.1 in Stylophora pistillata

Genomic Location: Spis.scaffold331:272889...283624
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00293 all species →	NUDIX	NUDIX domain	Domain	Interproscan
PF05026 all species →	DCP2	Dcp2, box A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020084 all species →	Conserved_site	NUDIX hydrolase, conserved site	Interproscan
IPR000086 all species →	Domain	NUDIX hydrolase domain	Interproscan
IPR036189 all species →	Homologous_superfamily	mRNA decapping protein 2, Box A domain superfamily	Interproscan
IPR044099 all species →	Domain	mRNA decapping enzyme 2 , NUDIX hydrolase domain	Interproscan
IPR007722 all species →	Domain	mRNA decapping protein 2, Box A domain	Interproscan
IPR015797 all species →	Homologous_superfamily	NUDIX hydrolase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23114 all species →	M7GPPPN-MRNA HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0030145 all species →	Molecular Function	manganese ion binding	Interproscan
GO:0000290 all species →	Biological Process	deadenylation-dependent decapping of nuclear-transcribed mRNA	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0050072 all species →	Molecular Function	obsolete m7G(5')pppN diphosphatase activity	Interproscan
GO:0000184 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0140933 all species →	Molecular Function	5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12613	DCP2; mRNA-decapping enzyme subunit 2	EC:3.6.1.62	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.