Gene detail

Detailed information of PFX20241.1 in Stylophora pistillata

Genomic Location: Spis.scaffold325:230532...238014
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

TAPT1

ATGGCTGATCTTGCAAAAGAACAGGGAAATTTTCTTTCATCGGCTTCAACAGCGTCCACTAACGATTTGGACACCGAGGTCGTTATTCACACAGATGTTTTTGACCCATGCTCGAATCCCGTTGACGAAAACAGTACGGAATTGAAGGAGAAAACCGACCATGGCTTCGAAAGTTTGCCGAATACCTCTACTGCTGAAGGGCACGATCACGTAGAGTCTGTCGAATATGCTGTTGGTGTTGATGAGAAATACGAGAATCAGGAAAGCGTTGCTAAGAGAATGTCGTTGGATTTCGAGGAAGAAACTCAACGTGAAGATACGATAAAACCAGGAGGATTTTATATAGATGAGAAGACGCAAGAGATAGAGTTCAGACACAGATTTTTACAACAACAAGAACAGCTGTACCAAGCGCAACAAAAACAACTGCAACGACAGGAGAGGGTGGGCTGTCTGAATGAAGAAGCTAGATTTCCAAAAAGTAACTTTCAATCCTTAAAAACAATGGAACCAGAAATGCAATCATACCAGAAAGACCCGCATAGAGATGTTCCTCAAATAACGAAGGCTTCCTCTGAGGAGAAACTCGGTGATGGTTTGAGAAAGCTGTCATTTATGAAGTACTTCACAGCAGAAGTTTTCAGTGGAAAGCTCATGGAACTAGAAGAAGAAAAATACACAGAAAGACGCCAGAAAGTGTACACGTTCATGAAGATTCCAAGGGAATTTGAGAAGTTGATGGTGTTTGGGTTCATGTTGTGTTTGGATTGTTTCCTGTTCATGTTTACATTCCTTCCAGTTCGTTTGGTTGTTGCTCTGTACAAGATCATTACAGGGCTGTTATTTTGTAGAACGTCACGGATGCTACAGCCTGTTCAGATGTGTGACTTGTTAAAAGGGTCCATTCTTGTGACCTGTTGGTTGCTTCTAACCCATGTGGATTTCTCGGTGTTGTATCACACTGTTCGTGGACAATCAGTCATCAAACTTTATGTCATTTACAACATGTTAGAGATTGCAGACAGACTCTTTTCATCTGTGGGTCAAGACATTTTAGATGCTCTCTTCTGGACTGCAACAGAACCAAAAGATCGGAGAAGGGAACACATTGGGATCATTCCACATTTTGTAATGGCTGTAGTGTATGTGTTTTTCCATGCGGTGTTGGTGCTGTTTCAGGCTATCTGTCTCAATGTTGCTGTGAACTCACACAACAAAGCCTTGTTAGTAATCATGGTGTCAAACCAGTTTGTGGAACTGAAAGGAAGTGTTTTCAAGAGATTTGAGAAAAACAACTTGTTTCAAATGGCGTGTAGCGATCTGAAATCAAATTTCACACTAACCCTGGGTTACCTTAACCTACTTTTGAACAACCCAGCCCAGGACTATATTTTTTCATACACAGACATCAGAGAAAGATTTTACTACATAGTATTGGTGGTGATTGTCACGCTGAGGAATTTAACAGAATTTAACTGGAACGCTGAACATTTATATGTTATCTGTCCATATCTGTTGGCTGTGTTGTCTTCGGAGTATTTTGTGGATTGGATCAAACACGCTTTTATCACAAAATTCAACAATATTCCTGTTGAGGTTTACTGCGAATATAGAGCTCTCCTTGCTGAAGATGCGACCTCAAGTCGACAGAAGAACGCTCACAATGATCATTTCGATCTTGTTTCTCGTCGAATGGGTTTTATTCCTCTTCCTTTGGGATCCCTGGTTATTAGGGAAGTGGCGCAGTCTGTGAAGATACACGGCCTGGGTGGAATGTTTCTCGTGTTGGCCACATTTTTCTTCCTAACGTCAGTAAAAGTTTTAAACAGCATCATATTTCTCGGCAAAGCGACTCAGTACGTGAAGCAGAAACAGGACGTAGAAACTGAGAACAAACAACACAGTAACCAAGCCTCCTCGCAGAACCTCAAAGCCCAAGTCTCTGTGACTTTGTTGGATTCTAGCCAGTCTTCGAGCACTTCGTTAGTTGGAGAGAAACAAGACCCAGGACCGCGGGGAGCTGGTGAACAGACGAAGCAACGCGCCAAAACACTAGCAGAAATTGATAGATACACACTTTGCAGTAAAGAGATTGTTGTTTTCTAA

Transcript

rna-Spis15317_mrna

ATGGCTGATCTTGCAAAAGAACagggaaattttctttcatcggCTTCAACAGCGTCCACTAACGATTTGGACACCGAGGTCGTTATTCACACAGATGTTTTTGACCCATGCTCGAATCCCGTTGACGAAAACAGTACGGAATTGAAGGAGAAAACCGACCATGGCTTCGAAAGTTTGCCGAATACCTCTACTGCTGAAGGGCACGATCACGTAGAGTCTGTCGAATATGCTGTTGGTGTTGATGAGAAATACGAGAATCAGGAAAGCGTTGCTAAGAGAATGTCGTTGGATTTCGAGGAAGAAACTCAACGTGAAGATACGATAAAACCAGGAGGATTTTATATAGATGAGAAGACGCAAGAGATAGAGTTCAGACACAGATTTttacaacaacaagaacagcTGTACCAAgcgcaacaaaaacaactgcaACGACAGGAGAGGGTGGGCTGTCTGAATGAAGAAGCTAGATTTCCAAAAAGTAACTTTCAATCCTTAAAAACAATGGAACCAGAAATGCAATCATACCAGAAAGACCCGCATAGAGATGTTCCTCAAATAACGAAGGCTTCCTCTGAGGAGAAACTCGGTGATGGTTTGAGAAAGCTGTCATTTATGAAGTACTTCACAGCAGAAGTTTTCAGTGGAAAGCTCATGGAactagaagaagaaaaatacacAGAAAGACGCCAGAAAGTGTACACGTTCATGAAGATTCCAAGGGAATTTGAGAAGttgatGGTGTTTGGGTTCATGTTGTGTTTGGATTGTTTCCTGTTCATGTTTACATTCCTTCCAGTTCGTTTGGTTGTTGCTCTGTACAAGATCATTACAGGGCTGTTATTTTGTAGAACGTCACGGATGCTACAGCCTGTTCAGATGTGTGACTTGTTAAAAGGGTCCATTCTTGTGACCTGTTGGTTGCTTCTAACCCATGTGGATTTCTCGGTGTTGTATCACACTGTTCGTGGACAATCAGTCATCAAACTTTATGTCATTTACAACATGTTAGAGATTGCAGACAGACTCTTTTCATCTGTGGGTCAAGACATTTTAGATGCTCTCTTCTGGACTGCAACAGAACCAAAAGATCGGAGAAGGGAACACATTGGgatcattccacattttgtaaTGGCTGTAGTGTATGTGTTTTTCCATGCGGTGTTGGTGCTGTTTCAGGCTATCTGTCTCAATGTTGCTGTGAACTCACACAACAAAGCCTTGTTAGTAATCATGGTGTCAAACCAGTTTGTGGAACTGAAAGGAAGTGTTTTCAAGAGATTTGAGAAAAACAACTTGTTTCAAATGGCGTGTAGCGatctgaaatcaaatttcacactaaccctgggttacctTAACCTacttttgaacaacccagcccaggACTATATTTTTTCATACACAGACATCAGAGAAAGATTTTACTACATAGTATTGGTGGTGATTGTCACGCTGAGGAATTTAACAGAATTTAACTGGAACGCTGaaCATTTATATGTTATCTGTCCATATCTGTTGGCTGTGTTGTCTTCGGAGTATTTTGTGGATTGGATCAAACACGCTTTTATCACAAAATTCAACAATATTCCTGTTGAGGTTTACTGCGAATATAGAGCTCTCCTTGCTGAAGATGCGACCTCAAGTCGACAGAAGAACgcTCACAATGATCATTTCGATCTTGTTTCTCGTCGAATGGGTTTTATTCCTCTTCCTTTGGGATCCCTGGTTATTAGGGAAGTGGCGCAGTCTGTGAAGATACACGGCCTGGGTGGAATGTTTCTCGTGTTGGCCACATTTTTCTTCCTAACGTCAGTAAAAGTTTTAAACAGCATCATATTTCTCGGCAAAGCGACTCAGTACGTGAAGCAGAAACAGGACGTAGAAACTGAGAACAAACAACACAGTAACCAAGCCTCCTCGCAGAACCTCAAAGCCCAAGTCTCTGTGACTTTGTTGGATTCTAGCCAGTCTTCGAGCACTTCGTTAGTTGGAGAGAAACAAGACCCAGGACCGCGGGGAGCTGGTGAACAGACGAAGCAACGCGCCAAAACACTAGCAGAAATTGATAGATACACACTTTGCAGTAAAGAGATTGTTGTTTTCTAAAAGTTTCATGACTCAAAATTAGTGATCCCACAGGAATGCGGAatgatttttctatttatttatggaattcAAATCCAAACATATAATGCT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05346 all species →	DUF747	Eukaryotic membrane protein family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008010 all species →	Family	Tapt1 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13317 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030176 all species →	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0045724 all species →	Biological Process	positive regulation of cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX20241.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.