Gene detail

Detailed information of PFX20289.1 in Stylophora pistillata

Genomic Location: Spis.scaffold323:219341...230859
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09302 all species →	XLF	XLF-Cernunnos, XRcc4-like factor, NHEJ component	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052287 all species →	Family	Non-homologous end-joining factor	Interproscan
IPR038051 all species →	Homologous_superfamily	XRCC4-like, N-terminal domain superfamily	Interproscan
IPR015381 all species →	Domain	XLF, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32235 all species →	NON-HOMOLOGOUS END-JOINING FACTOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006303 all species →	Biological Process	double-strand break repair via nonhomologous end joining	Interproscan
GO:0032807 all species →	Cellular Component	DNA ligase IV complex	Interproscan
GO:0045027 all species →	Molecular Function	DNA end binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10980	NHEJ1, XLF; non-homologous end-joining factor 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.