Gene detail

Detailed information of PFX20485.1 in Stylophora pistillata

Genomic Location: Spis.scaffold315:66267...91835
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Wdr24

ATGGCTAAAACCCAAGAGAAAGGAGTTGGTGGAGGGACTAACAATGCTTCTACAATGTACTTTGTTGTGGAAGGGGGTCTGAATTCACTGAGCACATCAAAAGATGGATCACAAGTAGTTGTGGCTGGTCGAAATGTTTTTAAGGTCATCAGCATTGGAGAGACTGGATTTGTTGAAAAAACTAATTTACGTGTTGGAAGGATTAACTTGAACTTCAGCATAACAGATGTTCAGTGGCATCCAGTTGATGATTACATTCTGGCAACTGCAGCTGGTAATGGTGCTGTTGTGCTTTGGAATTTGAACAAAATCACAAGACAGAAACAGGAGTTGGTATTCACGGAACATAAGAGGACTGTCAATAAAATTCAGTTCCATCCTTTTGAAAACCACATTTTGTTGAGTGGATCACAAGATGGAACAATGAGATATTTTGATTTAAGAAAACAAAGTGTTGCATTAACATTCCTTGGAAAAGCAGAAAGTATACGAGATGTTCAGTTCAGCCCATTTCAAGGTGATAGTCAAAAATTTGCTGCTGCATGTGAGAATGGTAATGTTCAGTTGTGGGATAGCCGGGTGCCAAACTGTCCTTTCAATCAATACATGGGACATAATGGACCAACATTTGCTATCGACTGGCATCCTGAAGAGAGGAACTGGGTGGCCTCTGCTGGCAGAGACAAAATGGTTAAGGTATGGGATGTCTCTGGTAAGACGCCCCTGATGAACACCATTCAAACAATAGCTTCTGTGGCACGCATCAAGTGGAGACCACAGAGAAAATATCAGATTGCAAGCTGCTCTCTGCTTGTGGATTTTGATATTCATGTTTGGGACATCAGACGACCTTACATACCACATGCATCTTTTGGTGAACACAAGGATGTTGTAACAGGTATACTGTGGCGGCAGACACTGCACAACAAAGACCCGTTTGTATTCCTGTCATGCGCGAAAGACTCCATGTTGTATCAACACGCGTTCAGTGACGCTCAACACCCAGCTGAACATGCCCCCCGGGTTGGACTGTCAATCAATGTCAATGGCGACATAAGTGTAGCATCAAGTGATCAGTCATTAAAGAGAATTCCTACACAGAGTATGATACAGACCAGACCGCGCGTGGTTAATAACACCGCATACAACATTATTGCGTCTCATCGAAAGTTTCAAGACATGGCTGACAATGTTACCGAAGTCAGGAGCACACTTTTGGTTCATCAGAATAGCAAATCCACGAAAGAGGACTGGTTTCGCATTCTGGCTCAAAGCTATCAGCTGAGCGGATGGAGTTATTCAGAGCTCTGTGAACACAACTACACTGTTGCAAGTAAACTTATGATCCATGAACATGCGCAGACATGGTCTGTTCTTAAAACTCTGTATGGCATGACCGGGGGATCTGGAACTACACCTGCAGCACTAGCACCCACCCCCAAGAATCCTCTTGCAGCCGGAAGTCATGGCAGCACCACTGGAAATGCTGAACCTGTTGAAGTCAGTACACAAAGTAATACTCAGACTTCCTCAGCCAATCAAAAATCGTCAACTGAGCCAGCAGTGACACAAAACACTCAACCGGCATCTGAAACACAAGACGATAATAATGACGCATCGTCTACGAGCGGCGAAAATGAAAATGCGAAGTTGATGAATTTAGAAGGACAAGAATTTACATTCAACGATCTTGATCAAGATGAATTTCAGTTCCCCTATGATGGCCTTCTCGGCCTCGGAGATGCGCCTCAGGACTGGAAACTACCCAGCGAAGCTTTCGAACCTAGAGCAGCGTTGGATGACAGACCCACTTTTCCAACCTTGGATCAGGAAATAGATAGACCCGACTCGCCTACCAGCAATATAGAGTCTGAAGCAACCTCGGCAACGAATCCAAAGTCCTTTATTGATTCAAATCTTGAAAATCAAGGATCTGTTTCCCCCTCAAACGAAACGTTGTCTCTTCCCGAGTGGGATTTTACACCACTGGTTGTGGAAATGCTTCATCACTTTGCGGACGAGGGAGACGTACAAATGTGTGTATCTGCATTGATTGTCCTCGGGGAGAAAATTCGCAGCAAGATTGATGAACAAACTCAAGAACAGTGGCTCATGGCCTATATCGATTTACTTGGTCGTCTGCAGCTGTGGACGGTGGCAAATCAGATTATTAAGCTGTCCAGTCTCCACGCAGTCAGCTCCTTAAACCAGGCATCAACAACAGTGCATACATCTTGTGGGCGTTGTTCCAAACCGTTGACTAAGTCAGGCTGGTATTGTGAAAGATGTCGGGGTCTTGTGTTTCCATGCTCAGTGTGTCATCTGATGGTGAAAGGTTTAAACGTGTGGTGTCAAGGGTGCGGTCATGGCGGCCATCTTACTCACATGCAGGAGTGGTTTGAAAAATACATATGGTGTCCTGCGGGCTGTGGGCACATGTGCGAGTACACGTGA

Transcript

rna-Spis15066_mrna

GAGCTTCTGGGAGCTTGTGGACAAGCCGACCGTGCATGAAATGGCTAAAACCCAAGAGAAAGGAGTTGGTGGAGGGACTAACAATGCTTCTACAATGTACTTTGTTGTGGAAGGGGGTCTGAATTCACTGAGCACATCAAAAGATGGATCACAAGTAGTTGTGGCTGGTCGAAATGtttttaagGTCATCAGCATTGGAGAGACTGGATTTGTTGAAAAAACTAATTTACGTGTTGGAAGGATTAACTTGAACTTCAGCATAACAGATGTTCAGTGGCATCCAGTTGATGATTACATTCTGGCAACTGCAGCTGGTAATGGTGCTGTTGTGCTttggaatttgaacaaaatcaCAAGACAGAAACAGGAGTTGGTATTCACGGAACATAAGAGGACTGTCAATAAAATTCAGTTCCATCCTTTTGAAAACCACATTTTGTTGAGTGGATCACAAGATGGAACAATGAGATATTTTgatttaagaaaacaaagtgtTGCATTAACATTCCTTGGAAAAGCAGAAAGTATACGAGATGTTCAGTTCAGCCCATTTCAAGGTGATAGTCAAAAATTTGCTGCTGCATGTGAGAATGGTAATGTTCAGTTGTGGGATAGCCGGGTGCCAAACTGTCCTTTCAATCAATACATGGGACATAATGGACCAACATTTGCTATCGACTGGCATCCTGAAGAGAGGAACTGGGTGGCCTCTGCTGGCAGAGACAAAATGGTTAAGgtATGGGATGTCTCTGGTAAGACGCCCCTGATGAACACCATTCAAACAATAGCTTCTGTGGCACGCATCAAGTGGAGACCACAGAGAAAATATCAGATTGCAAGCTGCTCTCTGCTTGTGGATTTTGATATTCATGTTTGGGACATCAGACGACCTTACATACCACATGCATCTTTTGGTGAACACAAGGATGTTGTAACAGGTATACTGTGGCGGCAGACACTGCACAACAAAGACCCGTTTGTATTCCTGTCATGCGCGAAAGACTCCATGTTGTATCAACACGCGTTCAGTGACGCTCAACACCCAGCTGAACATGCCCCCCGGGTTGGACTGTCAATCAATGTCAATGGCGACATAAGTGTAGCATCAAGTGATCAGTCATTAAAGAGAATTCCTACACAGAGTATGATACAGACCAGACCGCGCGTGGTTAATAACACCGCATACAACATTATTGCGTCTCATCGAAAGTTTCAAGACATGGCTGACAATGTTACCGAAGTCAGGAGCACACTTTTGGTTCATCAGAATAGCAAATCCACGAAAGAGGACTGGTTTCGCATTCTGGCTCAAAGCTATCAGCTGAGCGGATGGAGTTATTCAGAGCTCTGTGAACACAACTACACTGTTGCAAGTAAACTTATGATCCATGAACATGCGCAGACATGGTCTGTTCTTAAAACTCTGTATGGCATGACCGGGGGATCTGGAACTACACCTGCAGCACTAGCACCCACCCCCAAGAATCCTCTTGCAGCCGGAAGTCATGGCAGCACCACTGGAAATGCTGAACCTGTTGAAGTCAGTACACAAAGTAATACTCAGACTTCCTCAGCCAATCAAAAATCGTCAACTGAGCCAGCAGTGACACAAAACACTCAACCGGCATCTGAAACACAAGacGATAATAATGACGCATCGTCTACGAGCGGCGAAAATGAAAATGCGAAGTTGATGAATTTAGAAGGACAAGAATTTACATTCAACGATCTTGATCAAGATGAATTTCAGTTCCCCTATGATGGCCTTCTCGGCCTCGGAGATGCGCCTCAGGACTGGAAACTACCCAGCGAAGCTTTCGAACCTAGAGCAGCGTTGGATGACagACCCACTTTTCCAACCTTGGATCAGGAAATAGATAGACCCGACTCGCCTACCAGcaATATAGAGTCTGAAGCAACCTCGGCAACGAATCCAAAGTCCTTTATtgattcaaatcttgaaaatcAAGGATCTGTTTCCCCCTCAAACGAAACGTTGTCTCTTCCCGAGTGGGATTTTACACCACTGGTTGTGGAAATGCTTCATCACTTTGCGGACGAGGGAGACGTACAAATGTGTGTATCTGCATTGATTGTCCTCGGGGAGAAAATTCGCAGCAAGATTGATGAACAAACTCAAGAACAGTGGCTCATGGCCTATATCGATTTACTTGGTCGTCTGCAGCTGTGGACGGTGGCAAATCAGATTATTAAGCTGTCCAGTCTCCACGCAGTCAGCTCCTTAAACCAgGCATCAACAACAGTGCATACATCTTGTGGGCGTTGTTCCAAACCGTTGACTAAGTCAGGCTGGTATTGTGAAAGATGTCGGGGTCTTGTGTTTCCATGCTCAGTGTGTCATCTGATGGTGAAAGGTTTAAACGTGTGGTGTCAAGGGTGCGGTCATGGCGGCCATCTTACTCACATGCAGGAGTGGTTTGAAAAATACATATGGTGTCCTGCGGGCTGTGGGCACATGTGCGAGTACACGTGACTAAAACAGAGAGGAAACGTTACAAGACTGGAAGAGAAACGTCACAGGGGAGGTGAAACATGTGACGGTTTTTTAGAGACACGTGATTGGAACTGACATGAAATGTACTTAAATACGGTAACGAAGAACAATTTGGGACCCTTAATGTGTTAAGAGATTAGAGGGATCGCGTCAAATGATCAGCTTTGATTTGTGATACTTCCCGCAGAAGACTTCGCTCGAGTTGCGAGCGTTCCGTGGTAGTTTTGGCATGCGCGACACCATTACAAAATGACGACCAATCAGAAACGCAGATACAAAGTCATTCTTCAGTAATGAGTGACTCGAGATGGTGCCCAGCACTGGATGGAGGTGATACGAAAACTCATCCACCCGTTTTGTGTGGGAAAACCTTTGGAGATTACGTTCAGTTGTTAACATTGGCTTGTAAccatgttgtagttcaattttatcctt

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037590 all species →	Family	GATOR2 complex protein WDR24	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46200 all species →	GATOR COMPLEX PROTEIN WDR24	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005774 all species →	Cellular Component	vacuolar membrane	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016239 all species →	Biological Process	positive regulation of macroautophagy	Interproscan
GO:0032008 all species →	Biological Process	positive regulation of TOR signaling	Interproscan
GO:0034198 all species →	Biological Process	cellular response to amino acid starvation	Interproscan
GO:0061700 all species →	Cellular Component	GATOR2 complex	Interproscan
GO:1904263 all species →	Biological Process	positive regulation of TORC1 signaling	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20408	WDR24, SEA2; SEA/GATOR complex protein SEA2/WDR24	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.