Gene detail

Detailed information of PFX20537.1 in Stylophora pistillata

Genomic Location: Spis.scaffold313:53170...70076
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Prkaa2

ATGCCTCGGTTCCTTGTTGGACGCCGAAGGAAAGCGGTGGACCACGTGATTCCTTACCCAAACATGGCGGCCAAAGAGCGCAGAGATCAGACTATCAACGCGAAATTATGTATCGGAAATTATGTGCTTGGAACAACTTTGGGTGTTGGAACGTTTGGAAAAGTAAAATTGGCAGTTCATCAGCTGACAGGCCACAAAGTAGCTGTGAAAATCCTAAACAGACAGAAGATCAAGAATCTTGATGTTGTCGGCAAAATAAGGAGGGAGATTCAAAACTTAAAACTCTTTAGACATCCTCATATCATAAAATTATATCAAGTGATCAGTACTCCATCTGATATATTTATGGTAATGGAATATGTATCTGGAGGAGAATTGTTTGACTACATCCTTAAACATGGAAAGCTTCAAGAGAAGGAGGCTCGAAGATTTTTCCAGCAAATCATATCTGGAGTGGATTACTGCCATAGACATATGGTAGTCCACAGGGACCTTAAACCTGAGAATCTCCTTCTGGATGCCCAAGCAAATGTAAAAATAGCAGACTTGGGATTATCTAACATGATGACAGATGGTGAATTCCTCCGAACAAGTTGTGGATCACCAAATTATGCAGCCCCTGAAGTCATATCTGGAAAACTTTATGCTGGTCCAGAGGTAGATATATGGAGCTGTGGGGTGATTCTTTATGCCCTTTTATGTGGAAGTCTTCCCTTTGATGACGAACATATTCCGACTCTATTCAAAAAAATTAAAGGAGGTGTATTTTATATACCATCACATCTGTCATCAGAGACAAGCAGTTTGGTATCATCAATGTTACAAGTTGATCCCATGAAGAGAGCGACAATGCAGCAAATAAAGAATCATGATTGGTTCAAAAAGGATCTCCCAGTTTACCTGTTCCCATCGTCTTGCTTAGAAAGTGATATGGTAGACCAGGAGTGCGTAGCATCAGTGTGTGAGAAACTAAACTGTAGCGAAAGTGATGTTCGTTGGGCAATAAAAAATGGAGATCCTCATGACCAACTGAAGATTGCTTATCATCTGATACTGGACAACAAGAGAATGAAAATGTTAGCTCAAGGAGAGGGCAATGTAAAGGACTTCTTCACATCTATTTCACCTCCCATATCCTCCTTCCTTGTGAAGGAACCAGCATCACCTTTGCGAAGTGCTATGTCTTCAAGTGAAAGCATTCCCAATACAGCCACGAATAAAGCAAGATCCAGCATTCGATCACAGAGCAAGCCAAATGATATTATGGGTGAAGTGTACCGCGCCATGATGTCTTTAGGTTATGAGTGGAAAATCATAAACCCCTTTAATTTAAGAGTGCTTCGAAGAAACAGGATTACTGGAAAATTTACGAAGATCGCCGTTCAGTTGTACCAGGTCGATCATAAAAGTTATCTCCTGGACTTCAAAAGCATTCCCACCCCGGAAAACCCTCCAGAACACTCAGAAGGAACACTATCGGGAAAGTCGTCCAGAAAATCGTCTGCAAACTCCTCGTTTAACAGCCTCAAAGACTCCGACAGTTTCAAGAGTCATACTGGCTCACATCACACGATGGAATTCATGGAAATAGTGTTGATGCCATCGTATAACGCAGTTACAAAAGATTACTGGGTGTGTTGGCGAATCCTGGAGAGGGATCCGATGGGCCCAGGAAAGAGCGTGGATGATGTTTTAGATAGTGTAACTGACAAGTTCAAATCGGCGGGAAGTATGGCCGCCAGCGGGACCGCTATTAGACCAGCCGTTGATTTAGACAACTTAATTCAAGAATATACGTATTTTGAAAAGGTAATGAGGAACACTGCACAGGAAAACAGCGGCTTAAAGAAGGAGATACGATCTCTTAAGAAGCAGCTTATATCCAGCCAGGAAGCTGAAAAGTTGTCCATGGAAGAAGCTGGAAAGTTTAAGGCTATGATAGACAATCTTCAGAAAGTCCTTTTACAAAGGATGGAAATCACAACAATGGAGAAGTCCCTAGACGAGAAAGAAAGTCAAATACAGCAACTTGAGAAGCAGCTGACTGGTATGAGTCACTCGCACCAAACAGAAATAGTCAAGCTACGGTTAGAGTTTGACGAAAAAGTATTAAAACTGCAACGTGAAAGAAATAACGCGAAGGCTCAGGCTGGTCAATCGTTTAATGCTAACACTGACATTTTCCGAAAGAAACTTCAGTTTGCCAAAGCCGAGGCACAAAAGGAAATCAGCTCCTTGAAAAGTAAAGTTGCCGAGCTGGAAAGAAGGTTAACAATTCGACAGATGTCAACCTCGAAGAGAAAAATGTTCTGA

Transcript

rna-Spis14998_mrna

ATGCCTCGGTTCCTTGTTGGACGCCGAAGGAAAGCGGTGGACCACGTGATTCCTTACCCAAACATGGCGGCCAAAGAGCGCAGAGATCAGACTATCAACGCGAAATTATGTATCGGAAATTATGTGCTTGGAACAACTTTGGGTGTTGGAACGTTTGGAAAAGTAAAATTGGCAGTTCATCAGCTGACAGGCCACAAAGTAGCTGTGAAAATCCTAAACAGACAGAAGATCAAGAATCTTGATGTTGTCGGCAAAATAAGGAGGgagattcaaaacttaaaactcTTTAGACATCCTCATATCATAAAATTaTATCAAGTGATCAGTACTCCATCTGATATATTTATGGTAATGGAATATGTATCTGGAGGAGAATTGTTTGACTACATCCTTAAACATGGAAAGCTTCAAGAGAAGGAGGCTCGAAGATTTTTCCAGCAAATCATATCTGGAGTGGATTACTGCCATAGACATATGGTAGTCCACAGGGACCTTAAACCTGAGAATCTCCTTCTGGATGCCCAAGCAAATGTAAAAATAGCAGACTTGGGATTATCTAACATGATGACAGATGGTGAATTCCTCCGAACAAGTTGTGGATCACCAAATTATGCAGCCCCTGAAGTCATATCTGGAAAACTTTATGCTGGTCCAGAGGTAGATATATGGAGCTGTGGGGTGATTCTTTATGCCCTTTTATGTGGAAGTcttccCTTTGATGACGAACATATTCCGactctattcaaaaaaattaaagGAGGTGTATTTTATATACCATCACATCTGTCATCAGAGACAAGCAGTTTGGTATCATCAATGTTACAAGTTGATCCCATGAAGAGAGCGACAATGCAGCAAATAAAgaATCATGATTGGTTCAAAAAGGATCTCCCAGTTTACCTGTTCCCATCGTCTTGCTTAGAAAGTGATATGGTAGACCAGGAGTGCGTAGCATCAGTGTGTGAGAAACTAAACTGTAGCGAAAGTGATGTTCGTTGGGCAATAAAAAATGGAGATCCTCATGACCAACTGAAGATTGCTTATCATCTGATACTGGACAACAAGAGAATGAAAATGTTAGCTCAAGGAGAGGGCAATGTAAAGGACTTCTTCACATCTATTTCACCTCCCATATCCTCCTTCCTTGTGAAGGAACCAGCATCACCTTTGCGAAGTGCTATGTCTTCAAGTGAAAGCATTCCCAATACAGCCACGAATAAAGCAAGATCCAGCATTCGATCACAGAGCAAGCCAAATGATATTATGGGTGAAGTGTACCGCGCCATGATGTCTTTAGGTTATGAGTGGAAAATCATAAACCCCTTTAATTTAAGAGTGCTTCGAAGAAACAGGATTACTGGAAAATTTACGAAGATCGCCGTTCAGTTGTACCAGGTCGATCATAAAAGTTATCTCCTGGACTTCAAAAGCATTCCCACCCCGGAAAACCCTCCAGAACACTCAGAAGGAACACTATCGGGAAAGTCGTCCAGAAAATCGTCTGCAAACTCCTCGTTTAACAGCCTCAAAGACTCCGACAGTTTCAAGAGTCATACTGGCTCACATCACACGATGGAATTCATGGAAATAGTGTTGATGCCATCGTATAACGCAGTTACAAAAGATTACTGGGTGTGTTGGCGAATCCTGGAGAGGGATCCGATGGGCCCAGGAAAGAGCGTGGATGATGTTTTAGATAGTGTAACTGACAAGTTCAAATCGGCGGGAAGTATGGCCGCCAGCGGGACCGCTATTAGACCAGCCGTTGATTTAGACAACTTAATTCAAGAATATACGTATTTTGAAAAGGTAATGAGGAACACTGCACAGGAAAACAGCGGCTTAAAGAAGGAGATACGATCTCTTAAGAAGCAGCTTATATCCAGCCAGGAAGCTGAAAAGTTGTCCATGGAAGAAGCTGGAAAGTTTAAGGCTATGATAGACAATCTTCAGAAAGTCCTTTTACAAAGGATGGAAATCACAACAATGGAGAAGTCCCTAGACGAGAAAGAAAGTCAAATACAGCAACTTGAGAAGCAGCTGACTGGTATGAGTCACTCGCACCAAACAGAAATAGTCAAGCTACGGTTAGAGTTTGACGAAAAAGTATTAAAACTGCAACGTGAAAGAAATAACGCGAAGGCTCAGGCTGGTCAATCGTTTAATGCTAACACTGACATTTTCCGAAAGAAACTTCAGTTTGCCAAAGCCGAGGCACAAAAGGAAATCAGCTCCTTGAAAAGTAAAGTTGCCGAGCTGGAAAGAAGGTTAACAATTCGACAGATGTCAACCTCGAAGAGAAAAATGTTCTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16579 all species →	AdenylateSensor	Adenylate sensor of SNF1-like protein kinase	Domain	Interproscan
PF21147 all species →	AMPK_alpha_AID	AMP-activated protein kinase, alpha subunit, autoinhibitory domain	Domain	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR028375 all species →	Homologous_superfamily	KA1 domain/Ssp2, C-terminal	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR032270 all species →	Domain	AMPK, C-terminal adenylate sensor domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR049020 all species →	Domain	PRKAA1/2, autoinhibitory domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24346 all species →	MAP/MICROTUBULE AFFINITY-REGULATING KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX20537.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.