Gene detail

Detailed information of PFX20685.1 in Stylophora pistillata

Genomic Location: Spis.scaffold307:308384...331104
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis14858_mrna

CTAAAATGGCGGCTAGTGGGAAGGACATTCTGGCCGCATCTCCTCCCAAAATTTCACGTGATTCAATACTTTCAGACTATCCATTGCATTGGCACGTCTGGCATAAAGATGCCTCGTCACTTGAAGAAGAACTTGCTTTGAACAAGCACAATAAAGAGCTTCTGGACCCTCGTGGACGGACACCACTTCATCTTGCGGTTAGTCTAGGTTATTTGGATTGTGTAAAGTGTCTTCTTCGCGGAGGCTGCGATGCAAACGCTATTAATCAGGATGGGTGGAATGTGTCGCACGAAGCCATTAGCACAGGAAACCCTGAGATTTTATCACTTGTACTTCAACACCGAGACTTTCAAAGAGGAAGTCTGAGGCTTGCTGGAATTCCTGAACTATTGGAAGAACTCAATTCTACTCCAGATTTTTATGTGGAAATGAAATGGGAATTCACCAGTTGGGTTCCATTCATGTCTAGAATGTGTCCCAGTGATACATACAAAATATACAAATGTGGTGCAAATGTTCGAGCAGACACCACATTAATTGGCTTTGACCAGAATGACTGGCAGAGGGGTAATAGGAGTTACATTTTTAAGGGCAGAGCTGAAGGAGGACAATTTTTAGAGattgatcatgaaaaaaagaGATACTTCAAAGAGACTTTGCATATCAGggaAGATTTTCGTGACCTGGAGGGGCTTAAACCTTCAGAGGATGTTATCAACGCCAGATTAACAACACCAGCTGTTGCTACCATGCTCAACACAGATAACATTGCATTTACAAGGCACAAAACCATGTGGGGTTGGGGTGGAGACAAGACAGAGGTTGTGAATGGATATGAGTGCAAAGTGTATACTGCAAGTGGGGTGGAAGTTCTCACTAAAACACGAGTGGAGCACTTGAATGCCGAAGATAAACAGGTGGCTCAAAATACAAATGATACATTTGCTGCAAATGGTCTACAAACTCTCTTGGGCATTGAAGAAGAGAATTTATCAAATAATGTGGAGGATGACCAAGATGGTTCAGACCTAGATCCTACTTCTTCTAACCCTTACAAAATGAGTTTAGAGGAGTACTTTAATCCTAATCCAGAATTAAATACAAAGGATATTGGAAAGTTGAAAGAAATGACAGTAAAGAAGCAGAAGTTTAAAGCTACAATTTCAATGTGTGACAAGCACCCCTTGTCCCTTCGTGAACAAGTGCTTCCAATTGTCAAATTGCTGGCTATCAGCAACACTCATTTTGCCAAGCTTAGAGACTTCATTGCACTCCATCTACCAGCAGGATTCCCAGTCAAAATAGAAATTCCTTTGTTCCATGTCCTCAATGCCAAAATAACATTTGGTAATATTGGGGGAGGAGAATGTGCAGTGGAAGGAGTGCATGCAATCAGAGCTGATATGCAAGAAACTGGAGAAGATAGCCTCAACTCTACTGAAGGGGAGGAAGACCCCTTAGTGCCTGGGCTGGCTGCAAGGTGTGTCATAGAATCAACTTGTTTTGATGCCCCAGCAGACTACAGAGAGGTTAATCTGGATCAACCAGTTGCTCCTCTCAGAGATGAAGAAGATGAGATGCTGCAACTAGTCATACAACAGAGCTTGCTTGAATATCAACAGGACCCTTCACAGATTATGACTCTTCAGGCTTTACAAGACAGCCGGCAACAGGAAGATGATGACTTGCAACGTGCTATAAGAGAAAGCATGAGAGAAGGTGGTGTTGACGAGGGACAAACCCCACAGGTTGTTCCTGTTCAAAGACAACCTGGAGATGGAACCATTGCCTATGATGAAGACTTGCAGCTAGCAATGGCACTTTCTGAACAGCAGCTGGAGGAAGACGAACGGCTTCGAAAACAGGAAGAGGAACAGCTGGCTCAAGTTATTCAGCTATCTCTTGCAGAAAGTTAATTCATGTAGCTTTCAGGTCAGGCTCAAAACTCTTTAACTGCATTTGAATGGAACTTGCTGAGATTACGGTAGTTACTACTTGTAGTTAGTTTGTAAAGTGAAGCTGAAgctgaggtttttttttgaaggtactgatatttcttgtttatttctgGAATCGACTACTAatctaaaaaggaaagaagaattCTTGCAAAGCATTGAATTGAAGGTTTAAAAGTAGGAAACTATAAGAATTATGAGTATCATAAATTATTGCTCTTGACAttttccaatgtttttttttatctcaaaatctTGCCTCCAGTGAATTTAAGTCTTGTTAccagttttaaaattattttatcaccAATCTGCTGCGTTCATTTTGTATTTgcataacaaaaaattaacttgtttttttgtgtCAAATGTCACATCTTATTTTGTTAGACTCTGCACTGTCTGAATGCTTTGGAATTGGAGACTAATATTGTATGAACAAGTGTTTGTTTCATGCTTATCAGAGTCAACTTTGTCAAGTGTCTGCAGTAATATTACTCAAGAAGTTTCAGATTATATGAACAGTATcattaaaaagaatttttttaaattctatttttctcaaaacttttttggTGGGGATTgagaacattttcattttttttttggatagaATGCATAATTACTTTTACCTTGTATTTTGTTCATAAATTATTCCCCCTTACTATTAATTGTATTTTGTTCTCTGGGAGACTGTACAGATTTAAAGTGAAACAAGAGGAAATGTGAATagtaaaaacaataacattttatttatcaGACCAGTAAATGTTagaattttttgttcattaCTGTTGTTGTCTATTCTTGGGGAGTCTTCATAGAGATGGCTGGATGCAATTTGGTTTCTAGTCATGCTGTCCGTACAACTTGGGActgtcattagttttttttgtttcaatgccATGTTGGATGGGCAGACATGTGAATTCCCCTTTTATTTAGGAGCTATTTGTGcaataattcattttttaaacatCTAATTAAAAGAGGACATTTTTATTAGTTGCTCTAG

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Alpha-Helix\|UIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF02809 all species →	UIM	Ubiquitin interaction motif	Motif	Interproscan
PF11904 all species →	GPCR_chapero_1	GPCR-chaperone	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR003903 all species →	Conserved_site	Ubiquitin interacting motif	Interproscan
IPR021832 all species →	Family	Ankyrin repeat domain-containing protein 13	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12447 all species →	ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21437	ANKRD13; ankyrin repeat domain-containing protein 13	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.