Gene detail

Detailed information of PFX20789.1 in Stylophora pistillata

Genomic Location: Spis.scaffold302:296411...313740
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

AWC38_SpisGene14740

ATGGAGGAGGTAGATAACATTATTATCCACACGCTCAGACAAATCGGCTGTGACATGTCTGAGGATGTTTCAAGTCTAAAGGAGTTTACCACAGCCATGATTGTAGCAGCAACATCAAAATGTCTTCATATGATCAAAGAAGATCTTCAGATTCCATCTGTGTTGCCTGCCAGTATGTCATCTAAGTTTCGACTTGGAACAGCTCTTGCCAATGCCTGTCAGGAAGTTGGATACGGTGGTGAGATTGGTTATCAGACCTTTCTGTATTCCAATGAAGCTGATATCAGGAAATTGTTTATGTTTTTGGTGGAGCATCTTCCAAAAGAGAGTTCAGAGTCAGCTGGTGAACCTTTAGGCTCATCTGTGATGCTGCAGAGGCGTATATCAGCAGAGTTGTCCAAGAGACTTAAGAGGCCTTGGACACCTTCATTCTGCAAAAAGGACAGCATCAGTTGGAGTGGAACCAAGCCACAAGTTTGGCACAAAGAGGTACAGTCCAGAGCTGTCAATAAGTTTGAAAGTAGATGGCAAGTAAAGAAAAGTAGGGAAAATATTCTTGTCATGTTATACTATTCTCCTGCTATTCCATTGCCTAATGAGGACCTTTACATAGTTGACACTTTCAATAGAATTTTTGGAGCCAGGTCTGTGCGGAGATTTCATGCTTGCCCTTTGAGAGTACCAGAGGGTCTTGGAGATTTAACCAAGAAAATTCCCAAAGATTTAAAGGCTTACTACAGTAACTCAATGCCACTCATTACAAGCCAGCCATCTTGCCGCCAGGATGTAGCACCATCTGTGCTGGAAGCCAATGCCATATCTGTCACTCTGGATAATGAGTGGGAAAATGAGTGGAATCAAAGTGGATTAGCATCACGGCTGTCGAAAGAGGAATACCTTGCTCAGAAGAGGGAGCGTTTGGAAAAGAAGATCAAACAGCACGTTAAGAGTGAGCTGCAGAGGGCCAATCAAAAGGCTGCAGCAAATGGTGACCTCAGTGAGATTGTTTCATCCCTCTCAGACAAAGCTTCAGGAACCTCGGCACCTTCCAAGGGATCAAGATTCACTCACACTGAACAACTTCAGTTTGCACAAGATGAACAAAAGGCAGCTGCCATGGCGGGACTCACTGAAGAAGGTCCTCCTAAAGTGGACACAGAAGAGGAGATGAGGAAGAAAAGAGAAGAAGAACTCGAAGCATTGCAATCGAAACTGGGTGAACTGAATGCTGGCATTGAACGCGATGAACTTGGGATCAAGAAGTCTCTGGCTGGTATACAACAGGCAAATGAACAAGTCGCTGGTCAGAAGACTAAGAACACTGATCAGGAAGAAGTTTACAAAGTAAACAAAAGAACAATGGACTTACTGCCTGATGCAGAGAACAACATCGCAAAACTACAGAGTGTTGTAGACTCCAGTGCGCAGCGACTAGTGAACTTGGCTCAGCAGTGGGAAAAACACAGGGCTCCCCTGATTGATCAGTATAGGGAGTTGAAACAGCTCAATGCCAATAGAGTGTCTGAGGCTCAGAAAGAATTGGAAGAGATTAGATCTCTTCGAGAGAAAATGAAGGAAGTTGCAGACGAAGCCAGAGGAAAAGAAGAACTTCATAAAGAGCTGATTGCTGAATACGAGACCTTGGGGAAAGATGTCAATAGGTCCGCATACACTCGGCGCATTTTGGAAATTGTTGGAAACATCAAAAAACAGAAAGAAGAAATAAATAAGATTCTGATTGACACGAAAGATCTTCAAAAAGAAATCAATCAGCTATCTGGGAAGCTGGAAAGAACATTCGCCGTCACGGATGAACTTATTTTTAGGAACTGCAAAGAGCTGATTCAATCTGTAGAGGAAACGGGATCGATTGTTAGAGAAATACGAGATTTGGAGGATCAGATTGAAATGAAAAGTCAGAAAAACACGGCAACAAACCTCGAGCGAATCACGGCAGACTACAAGCAGATGAAAGAAGAGAACAACGCATTGGCGAAGAAACTAAAAGCAGCCAAATAA

Transcript

rna-Spis14740_mrna

ATGGAGGAGGTAGATAACATTATTATCCACACGCTCAGACAAATCGGCTGTGACATGTCTGAGGATGTTTCAAGTCTAAAGGAGTTTACCACAGCCATGATTGTAGCAGCAACATCAAAATGTCTTCATATGATCAAAGAAGATCTTCAGATTCCATCTGTGTTGCCTGCCAGTATGTCATCTAAGTTTCGACTTGGAACAGCTCTTGCCAATGCCTGTCAggaAGTTGGATACGGTGGTGAGATTGGTTATCAGACCTTTCTGTATTCCAATGAAGCTGATATCAGgaaattgtttatgtttttggTGGAGCATCTTCCAAAAGAGAGTTCAGAGTCAGCTGGTGAACCTTTAGGCTCATCTGTGATGCTGCAGAGGCGTATATCAGCAGAGTTGTCCAAGAGACTTAAGAGGCCTTGGACACCTTCATTCTGCAAAAAGGACAGCATCAGTTGGAGTGGAACCAAGCCACAAGTTTGGCACAAAGAGGTACAGTCCAGAGCTGTCAATAAGTTTGAAAGTAGATGGCAAGTAAAGAAAAGTagGGAAAATATTCTTGTCATGTTATACTATTCTCCTGCTATTCCATTGCCTAATGAGGACCTTTACATAGTTGACACTTTCAATAGAATTTTTgGAGCCAGGTCTGTGCGGAGATTTCATGCTTGCCCTTTGAGAGTACCAGAGGGTCTTGGAGATTTAACCAAGAAAATTCCCAAAGATTTAAAGGCTTACTACAGTAACTCAATGCCACTCATTACAAGCCAGCCATCTTGCCGCCAGGATGTAGCACCATCTGTGCTGGAAGCCAATGCCATATCTGTCACTCTGGATAATGAGTGGGAAAATGAGTGGAATCAAAGTGGATTAGCATCACGGCTGTCGAAAGAGGAATACCTTGCTCAGAAGAGGGAGCGTTTGGAAAAGAAGATCAAACAGCACGTTAAGAGTGAGCTGCAGAGGGCCAATCAAAAGGCTGCAGCAAATGGTGACCTCAGTGAGATTGTTTCATCCCTCTCAGACAAAGCTTCAGGAACCTCGGCACCTTCCAAGGGATCAAGATTCACTCACACTGAACAACTTCAGTTTGCACAAgatgaaCAAAAGGCAGCTGCCATGGCGGGACTCACTGAAGAAGGTCCTCCTAAAGTGGACACAGAAGAGGAGATGaggaagaaaagagaagaagaacTCGAAGCATTGCAATCGAAACTGGGTGAACTGAATGCTGGCATTGAACGCGATGAACTTGGGATCAAGAAGTCTCTGGCTGGTATACAACAGGCAAATGAACAAGTCGCTGGTCAGAAGACTAAGAACACTGATCAGGAAGAAGtttacaaagtaaacaaaagaacaatGGACTTACTGCCTGATGCAGAGAACAACATCGCAAAACTACAGAGTGTTGTAGACTCCAGTGCGCAGCGACTAGTGAACTTGGCTCAGCAGTGGGAAAAACACAGGGCTCCCCTGATTGATCAGTATAGGGAGTTGAAACAGCTCAATGCCAATAGAGTGTCTGAGGCTCAGAAAGAATTGGAAGAGATTAGATCTCTTCGAGAGAAAATGAAGGAAGTTGCAGACGAAGCCAGAGGAAAAGAAGAACTTCATAAAGAGCTGATTGCTGAATACGAGACCTTGGGGAAAGATGTCAATAGGTCCGCATACACTCGGCGCATTTTGGAAATTGTTGGAAACAtcaaaaaacagaaagaagaaataaataagATTCTGATTGACACGAAAGAtcttcaaaaagaaatcaatcaGCTATCTGGGAAGCTGGAAAGAACATTCGCCGTCACGGATGAACTTATTTTTAGGAACTGCAAAGAGCTGATTCAATCTGTAGAGGAAACGGGATCGATTGTTAGAGAAATACGAGATTTGGAGGATCAGATTGAAATGAAAAGTCAGAAAAACACGGCAACAAACCTCGAGCGAATCACGGCAGACTACAAGCAGATGAAAGAAGAGAACAACGCATTGGCGAAGAAACTAAAAGCAgccaaataa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21674 all species →	CCDC22_N	CCDC22 protein N-terminal domain	Domain	Interproscan
PF05667 all species →	CCDC22_CC	CCDC22 protein coiled-coil region	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048349 all species →	Domain	CCDC22, N-terminal domain	Interproscan
IPR008530 all species →	Family	Coiled-coil domain-containing protein 22	Interproscan
IPR048348 all species →	Domain	CCDC22, coiled-coil domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15668 all species →	JM1 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0097602 all species →	Molecular Function	cullin family protein binding	Interproscan
GO:2000060 all species →	Biological Process	positive regulation of ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23343	CCDC22; coiled-coil domain-containing protein 22	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.