Gene detail

Detailed information of PFX20837.1 in Stylophora pistillata

Genomic Location: Spis.scaffold301:202858...220821
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

WAPAL

ATGCCGAAATACGGCACCAAGACATACAGCCGTAATCGCGCCAAAGAATCAAAACTTTCCAAGGAATTTGATGAGATTCAGCACATTGAGAATTCGGATGCGAACGTCACATCAGGGCAAAACACTTTCTCAAGAAGGGCGTCAAGGAAGTCTCCATGGGCTAGAACAAGCAGAATTATCGAAAAAAATGCTGGTTTGACAAAGGTAGGGGGTGTGGATTCATTAAAGACAGGCAAACGGCGAAGATTAGGCACGATCGACGAGAAAGACCCGTACGCTTTCGACGAAGATGACGTGACGATATCATACTCACAGAAAAGTGCTTTGCAAAGTAACGCTATTGCACCAGCGAAGCAAACGATCGCGCCAGAAGTGACTGATAAAAGTACTGACGATGAAGCTTATAGCAGCTCTCAAGAATTTAGTGAAAATTCATCTCAAGGAAGCGAAAGGAAAACCACCTATTCTTACAAGAAGAAGCTTACTTCGTCACCATTTAAGAGTTTTCTGAAGAATAATGATAAATCTCTGTCACCAAAGAAAGACAAATCAAGGAGACTCTCAGCCTTGCCCACAAGTGCTGATTTTAGTGAAGAGTCCCAGGACGAAGCAGCTTCTGATACTCCAAGTCTTGCTCCAGCTGTGTGTTTACCACGAAGAAAAGACACTGATTCTCCCAGTGCAATCAGAGTTAAAAGAACAGAGAAACCACTTTTCACAGTAGTGAGGAATGTCAAACAAGTCCATGAGTGCCTGGAGTCAGGAGAAGATCAGCAGTTTTTTGATGATGTGGAATACCTTCTGGATGGTCTCAAAGAGACCCGTTCAATTTCGACCCGCTGTATCAGTGCCCTGGATTTTGCATCACACTGTGCCCAGCCCTCTTTCAGAGTGAGCCTTCGTGCCCATGGCATGGGACCCAAAATATTTTCAGCTCTTCAAGATGCGCCTTCAGATAAGTGCTTAGCACTTTGTACATCAGCCATTACTTTGATGCTATCCCAAGACCGTCAAAATGCTGACCTTGACAGATCAGTTCTTGAACTCATGATGAAACTCTTAGCTGTGGACAGCATGAACAAGCAATCAAAATCACTCAAAGATTACAATAAATACATCTCCAAAGTGCGGACTTTACTTGAGAAGCAAAGTGTATCTGAGGAGCTACTTGAAATGGGGGATGATGACATAAATGAAAAACTGTACCTTGGTCACTCCTCAGAGTTAAGACTTAAACTTGCTAATCACAAGTTTAAGGTTACAATCCAGAATTTGAATAATCAAAAGCATATGATTCAGTATGAAAAAGGGTCATTTGTTTCAAGCCTTGTCAGATTGTTACAAATGTGTCTAAACATACTCAACAATGGTGTCTCCTCAAAGAAAGCCAAGAAAAAACCTGATGAGGTGTTTCAAGACTGCTTCTTCAGCATTCTCAAAGTTTTTCTCAACCTTACTCACAATTTTGAGAGAGGATGTTCTTGCATTGGGCAACAAGAAGGCTTTTTATCATCCCTTCTTCTGACTGTTTTACAGAGTTTGGAATTGTTATTCAACCTCGTAGAGGACAGTAAGCAGAATGTCGCCTCCCTGGTACAGCTTCGTACCTCCTCCCCTTGCCATGAAAGTCAAGATGACAGCCAAGATGAGACAGATCAGGAGGGGAAACACAGTACAACTGAAGCTCTTGTACAGCTCTTTCTTATAAGAGAGGAAGCTGCTAGGAATACAGATGACATGACATCAGGTCTATCAACTGAAGAGGAAAGTAGTCAGGAGTCATTTAAACCAACAAAGGATGGCATGGGGTGGACTTTTGGTGAAGATATTGATGTTTCTGTTGATGAAGGAGATAAGAAATCTAATGACCCTCAAGAAGAAGAAGAAGAAATTGTACCTTTGGAGGTACAGATCGGGAAAGCATTACAAAAAGCTGGAAAACACATGGAAGATAGTGTTGTGGCTGCTTATGTTGCCCTGCTACTTGGATGTATTTTACAGGAAAATGAAGCAAACCAGTCTTTTGTCAGGAGTCTTTTACCTGATGGTGACTTTTCTCTACTTATCAATGTCTTGCGAAAATTCCTCCGCTTCATCAAACTCACGAGTGGTACAAGTGGTCATGGAATCGAAAAAATTGTTAAAGTATTGGAAAGTTGCAAGTAA

Transcript

rna-Spis14701_mrna

ATGCCGAAATACGGCACCAAGACATACAGCCGTAATCGCGCCAAAGAATCAAAACTTTCCAAGGAATTTGATGAGATTCAGCACATTGAGAATTCGGATGCGAACGTCACATCAGGGCAAAACACTTTCTCAAGAAGGGCGTCAAGGAAGTCTCCATGGGCTAGAACAAGCAGAATTATCGAAAAAAATGCTGGTTTGACAAAGGTAGGGGGTGTGGATTCATTAAAGACAGGCAAACGGCGAAGATTAGGCACGATCGACGAGAAAGACCCGTACGCTTTCGACGAAGATGACGTGACGATATCATACTCACAGAAAAGTGCTTTGCAAAGTAACGCTATTGCACCAGCGAAGCAAACGATCGCGCCAGAAGTGACTGATAAAAGTACTGACGATGAAGCTTATAGCAGCTCTCAAGAATTTAGTGAAAATTCATCTCAAGGAAGCGAAAGGAAAACCACCTATTCTTACAAGAAGAAGCTTACTTCGTCACCATTTAAGAGTTTTCTGAAGAATAATGATAAATCTCTGTCACcaaagaaagacaaatcaaGGAGACTCTCAGCCTTGcccaCAAGTGCTGATTTTAGTGAAGAGTCCCAGGACGAAGCAGCTTCTGATACTCCAAGTCTTGCTCCAGCTGTGTGTTTACCACGAAGAAAAGACACTGATTCTCCCAGTGCAATCAGAGTTAAAAGAACAGAGAAACCACTTTTCACAGTAGTGAGGAATGTCAAACAAGTCCATGAGTGCCTGGAGTCAGGAGAAGATCAGCAGttttttgatGATGTGGAATACCTTCTGGATGGTCTCAAAGAGACCCGTTCAATTTCGACCCGCTGTATCAGTGCCCTGGATTTTGCATCACACTGTGCCCAGCCCTCTTTCAGAGTGAGCCTTCGTGCCCATGGCATGGGACCCAAAATATTTTCAGCTCTTCAAGATGCGCCTTCAGATAAGTGCTTAGCACTTTGTACATCAGCCATTACTTTGATGCTATCCCAAGACCGTCAAAATGCTGACCTTGACAGATCAGTTCTTgAACTCATGATGAAACTCTTAGCTGTGGACAGCATGAACAAGCAATCAAAATCACTCAAAGATTACAATAAATACATCTCCAAAGTGCGGACTTTACTTGAGAAGCAAAGTGTATCTGAGGAGCTACTTGAAATGGGGGATGATGACATAAATGAAAAACTGTACCTTGGTCACTCCTCAGAGTTAAGACTTAAACTTGCTAATCACAAGTTTAAGGTTACAATCCAGAATTTGAATAATCAAAAGCATATGATTCAGTATGAAAAAGGGTCATTTGTTTCAAGCCTTGTCAGattgTTACAAATGTGTCTAAACATACTCAACAATGGTGTCTCCTCAaagaaagccaagaaaaaaCCTGATGAGGTGTTTCAAGACTGCTTCTTCAGCATTCTCAAAGTTTTTCTCAACCTTACTCACAATTTTGAGAGAGGATGTTCTTGCATTGGGCAACAAGAAGGCTTTTTATCATCCCTTCTTCTGACTGTTTTACAGAGTTTGGAATTGTTATTCAACCTCGTAGAGGACAGTAAGCAGAATGTCGCCTCCCTGGTACAGCTTCGTACCTCCTCCCCTTGCCATGAAAGTCAAGATGACAGCCAAGATGAGACAGATCAGGAGGGGAAACACAGTACAACTGAAGCTCTTGTACAGCTCTTTCTTATAAGAGAGGAAGCTGCTAGGAATACAGATGACATGACATCAGGTCTATCAACTGAAGAGGAAAGTAGTCAGGAGTCATTTAAACCAACAAAGGATGGCATGGGGTGGACTTTTGGTGAAGATATTGATGTTTCTGTTGATGAAGGAGATAAGAAATCTAATGACCctcaagaagaagaagaagaaattgtACCTTTGGAGGTACAGATCGGGAAAGCATTACAAAAAGCTGGAAAACACATGGAAGATAGTGTTGTGGCTGCTTATGTTGCCCTGCTACTTGGATGTATTTTACAGGAAAATGAAGCAAACCAGTCTTTTGTCAGGAGTCTTTTACCTGATGGTGACTTTTCTCTACTTATCAATGTCTTGCGAAAATTCCTCCGCTTCATCAAACTCACGAGTGGTACAAGTGGTCATGGAAtcgaaaaaattgttaaagTATTGGAAAGTTGCAAGTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07814 all species →	WAPL	Wings apart-like protein regulation of heterochromatin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022771 all species →	Domain	Wings apart-like protein, C-terminal	Interproscan
IPR039874 all species →	Family	Wings apart-like protein	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR012502 all species →	Domain	WAPL domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22100 all species →	WINGS APART-LIKE PROTEIN HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0071922 all species →	Biological Process	obsolete regulation of cohesin loading	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25163	WAPL; wings apart-like protein	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.