Gene detail

Detailed information of PFX20952.1 in Stylophora pistillata

Genomic Location: Spis.scaffold297:212614...222698
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis14578_mrna

GCGTGACTAATGctggctaaacttcagaatatcCGAATGCTAGCTGGAAGACGTCCTTTTAGACAGGgattatttcaagttttcagCAGAATGCAGTCAAATTTTGAGGTGAACATACAGCATATTCAAGATGCTGCAAAAAGAATTGAGCCATTTGTACACAAAACCCCAGTGATGACATCTGGAACTCTTGACAGAATGGCTGGCAGAGCCATTCATTTTAAGTGTGAAATCTTCCAAAAAATAGGTGCTTTCAAGatcagaGGGGCAATGAATGCTGTTATTCAGCTGTTAAATTCTCTGCCTGATGGTCAGAAACCTGTGTTGGTCACTCACAGTAGTGGAAACCATGCTCAGGCAATTGCTCTGTCATCAAAAATCATGGGACTACAGGCTGTTATTGCTATGCCAATAAATGCACCCTCAGTTAAGAAGGCTGCAGTAAGAGATTATGGTGCTACTATTGTTGACTGTGGTGCATCAGCTGAGGACAGGGAAGCAACTTCTCAAAGAATCCTTCAAGAGACAAGTAATTCCTATCTTATACCTCCATTTGACCATCCTCATATTATTGCTGGCCAGGGTACTATTGGTGTGGAATTATTGGAACAGGTACCAAACTTGGATGCAATAGTTGTTCCAGTTGGTGGCGGTGGCATGCTGAGTGGGATTGCTATTGCTGTCAAAGCTTTGAAGCCTGCCATTAAAATTTATGCTGCTGAACCTGCAAATGCTGATGACTGTGCTAAATCATTTGCTGCAAATGAAAGGATTCCACTCCAAGGCCCTCCTTGTACTATAGCTGATGGATTGAGGACTAGTATAGGCCATGTAACATGGCCAATCATAAAAGACAATGTAACTGATGTCATAACTGTCACAGAAGAAGAAATCATAGCTGCAATGAGGATACTGTGGGAAAGAATGAAGCTTTTAATTGAGCCATCAGCAGCTGTGGGTGTGGCAGCTGTTTTGTCAGAGAGATTCAAAGCACTCCCTAATCTGAACAATGTTGCTGTTGTGTTATGTGGTGGCAATGTAGACCTTGATAATCTCCCTTGGAAGAAGTAACAAGTGTAATTCAGTTTTTTCCAGGGGAGAaatccaaacaaaataaatttaactatGAATTAGCCTGCATTGCTGGCATCTTATTAGGGAGAGTTAATGTTGAGAGGCTTGCGATTGCTTATTCATCCAGCCATGATTGAGTCAACTGTGGGTGGAGGGTGTGAAGAAAGGCAAGATAATTAACTGGGTACTTGCCAGCCAAAATCACACTTGCTCTGCAGACTAACTATAAAGTTCAATTTCCCATGGGATTGTTAAAATTGGTCTAGTAATAAAAGATATTGCATTTTCTATGTTCAGCTGGAATGTTATACTAGGCAGTGATATATGCCACCCACAGGGTAAAGCGTGCAATTGAGATTGACATAGCTGCTGTTATCCCAATCTTTGTACATTGAAGTAACTCAAGGTATGTCACTCCTCCTCAAAGAGAATAGAAAATATTGCACGCTAGTCCATCACCAGTTAACTACTGCATATGATTGGGCTTCCACAAGTTTGCCAGAATACTCTAGCCCTTAGCGTGTCACTCAAATCTTTTCATCAAGAGTTTAGCATGCTAACCATTGCATTCCCCCCAAAATTTATTGGATAaaatattcttggttttcacatGGCATCctcaaaatcaaaaattaaggaACTATTAATccttttaagattttattttaGCTATTAGAACAGTTGAATACTtatctttttacaatttttcagtttgatagggTTTTTCAATGTTGAATCTCTAAGCTGTTGTGTGACATGATCTTAAAGTGGTGGCCAAGAATGCTGTCATGTaaggtaaaagaaaagtgaCGTAGCGGCTTAGATTTTGCAATCTGAACAATCTGTGAATGGGAAAGGGCACTGAATAGATGTTTAAGATGACTACAGGCTCTTTATAGCAAAACTCCATGACACGTGTTTGTTAGCTTCTGGCTGCTATACTCGAGTCCCTCAGAGGAACACAAACATGGCATCCCCCAATTAAGccttaaaatttgattaaaacagTTCTTCTTATAACTCCTTTGTGAAACAAGACTATTTCAGTATTCATCTTCTattatctctttgattcttgacttta

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00291 all species →	PALP	Pyridoxal-phosphate dependent enzyme	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036052 all species →	Homologous_superfamily	Tryptophan synthase beta chain-like, PALP domain superfamily	Interproscan
IPR001926 all species →	Domain	Tryptophan synthase beta chain-like, PALP domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43050 all species →	SERINE / THREONINE RACEMASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0003941 all species →	Molecular Function	L-serine ammonia-lyase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0018114 all species →	Molecular Function	threonine racemase activity	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0030378 all species →	Molecular Function	serine racemase activity	Interproscan
GO:0070179 all species →	Biological Process	D-serine biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12235	SRR; serine racemase	EC:5.1.1.18	D-Amino acid metabolism	ko00470	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.