Gene detail

Detailed information of PFX21154.1 in Stylophora pistillata

Genomic Location: Spis.scaffold289:72511...85735
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Twf1

ATGTCTCATCAAACCGGCATTCAAGCTAATGAAGAACTAAAGGCAATCTTTGCAAGAGCCAAACAAGGAAACATTAGAGTTATTAAAGTTGATATTCAGGATGAGCAGTTACTTTGTGCCAGTAGCATGGAACCTGATGGAGACTGGGAGAATGATATCCTTGAAATGGGTGATATTGTAAGGAGAAATTGGATGCTAATCACTCATTATGAAGAGGAAGAACCTTGCTATATATTTTATCGACTGGACTCCCAAAATAACCAAGGCTATGAATGGCTGTTCATCTCTTACTCTCCAGACTTTTCCAAGCCTCAGCGGAAGATGTTGTTTGCTGGAACAAAAGCTACCCTGAAGCAGGAGTTTGGAGGAGGCCATATAAAAGAAGAAATGTTTGGAACAAATCAATCTGATATTTCATTGAGTGGATTTAAGAAACACAAAGCTCATGAGAGTGCTCCTCCCCCACTCACAGACCAGGAGCTGGAACTTGAAATGGTAAAACAGCAAGAGATGCGCGCAGACATCAGTGTCGACAGCAAACAGAGTCACATGACTGGTGTCCAGTTTCCAGTAACAGATGCTGCTCTAGCTAAACTGGCAGAGCTCAAAGATAAAAAATTAAGCCTGGTCCAATTAGAACTTGACATTGAAAACGAAACAATTGTTCTTGCGGATGCCAAGGAGAACGTTGCTGCCAATGATTTGGCACAAAATATTCCTGAAGACAAAGGACGATATGTTTTCTTTCTCTTTAAACACACCTTTGAAGGCGATTACATGGAATCCATAGCTCCAAAGATCGTTTACGATTACAAAAATGCAAATTGGGAAGGTTTTCGCTCTCATCTTTCCAATGCCCCATGGGGCAATGTATTCTTAGAGAACAATGTTGATCAAATGTGGACTAAATGGAAAGAATTGTTCTTTGCTGCTGTTAATAAAAACATCAATACACATCATTTGAAAAGAAAAAGAAATGTTCCTTGGTTAACATCTGCAATTCGTCGCCTTTTTCACAAACGGAAACGCTTATGGAAAAAAGCTAAATCATCTCAACTTCAATCTGACTGGGAAAAATATAGGCAGTGTAGAAACAAAGTCAAATCTGAAATAAACAAGAGCTATTGGCACCATGTTCAGTCTCTTCAAAACAGTAACAATCCTAAACGTTTCTGGACTTTCATAAAATCTAAGACGAAATCACGATCTATTCCACCTGAAGTATCCCTGGAGAACCAAAAGGCTTCAAACAGCTTCGATAAAGCACAGCTATTCAACAACTTCTTCTCATCGGTTTTTATAGAGAGTCCTGGTATTCCTGAGAAGTTACGTGACGATCTTCAACCTTTTACTGATCAAGTCATCTCAAGTCTACTTTGCTCTAAATCTGAGGTCGAGAAATTGCTCATTGGTTTAAACGTTACAAAAGCTCATGGTCCGGATGGGATATCAGCGCGTATGCTTCGCGAGGCTGCACCAGCTATATCAGAGTCCATGACAAATTTATTTAACTTTTCACTCCAATCTGGCACCTTGCCTGTGGAATGGAAATCTGCTCACGTCATTCCAATTTTCAAAAAGGGCCAAAAAGATCTAGTCAAGAATTATCGTGCTATCTCTCTTACGAGTCTGATTGTAAAGACCCTAGAAAGACTGATATACAATCGCATTTTTGGGTTTATTGAATCAAATAATCTACTTAGTAGTCATCAATATGGCTTTCGTCCTGGATACTCCTGTACCTCTCAGTTGATACACCTTTTCCATGAATGGGCCAAAGCACTAGATAAACGCCTCTCTACCGATGTAATATTTCTGGACTTCGAAAAGGCCTTCGACTCAGTTCCTCATGACCGTCTTCTACTCAAACTAGAACGCTTTGGCATTACCGGCTCTCTACTTTCCTGGCTATCCAATTTTCTCCAAGGTCGATCTCAACGTGTTGTAATCGAGGGCTGCCAATCTGACTGGGCGCCTGTCACATCTGGTGTTCCACAGGGGAGCATTCTTGCCCCCCTGTTATTTATCCTATACGTCAATGACATCCCTGAATCTTTATCAAGTCCTGCAGAAATGTTTGCTGATGATATGTTAATCTATAATTACTGTACTCCATCTCAAACGTCCATCACTGCCCAGGAGAGTCTAGATAAAGTCACTGATTGGTGTGGCTCGTGGCTTTTAGGAACAAATGCTGACAAATGCGAGTCCATGAAGTTCACCAGGGCTAGAACTCCCTCTCCGTGCAACTATTCTATTAATAGCAAGCTACTTACCCAAGTATCTACACACAAACATCTTGGGGTAGTTCTTTCCAGTGATTTATCTTGGAAACCCCACGTACTGTCTGTTGTTGCAAGATCGAACAGATTATTGGGCTTACTCAAGCGGACATTTGGATCTCACTCTAGGGCTCTATTTACTGGTTATAGNTAA

Transcript

rna-Spis14362_mrna

ATGTCTCATCAAACCGGCATTCAAGCTAATGAAGAACTAAAGGCAATCTTTGCAAGAGCCAAACAAGGAAACATTAGAGTTATTAAAGTTGATATTCAGGATGagcagTTACTTTGTGCCAGTAGCATGGAACCTGATGGAGACTGGGAGAATGATATCCTTGAAATgggtgatattgtaaggagaaattggatgctaatCACTCATTATGAAGAGGAAGAACCTTGCTATATATTTTATCGACTGGACTCCCAAAATAACCAAGGCTATGAATGGCTGTTCATCTCTTACTCTCCAGACTTTTCCAAGCCTCAGCGGAAGATGTTGTTTGCTGGAACAAAAGCTACCCTGAAGCAGGAGTTTGGAGGAGGCCatataaaagaagaaatgtttgGAACAAATCAAtcTGATATTTCATTGAGTGGATTTAAGAAACACAAAGCTCATGAGAGTGCTCCTCCCCCACTCACAGACCAGGAGCTGGAACTTGAAATGGTAAAACAGCAAGAGATGCGCGCAGACATCAGTGTCGACAGCAAACAGAGTCACATGACTGGTGTCCAGTTTCCAGTAACAGATGCTGCTCTAGCTAAACTGGCAGAgctcaaagataaaaaattaagcCTGGTCCAATTAGAACTTGACATTGAAAACGAAACAATTGTTCTTGCGGATGCCAAGGAGAACGTTGCTGCCAATGATTTGGCACAAAATATTCCTGAAGACAAAGGACgatatgttttctttctctttaaacACACCTTTGAAGGCGATTACATGGAATCCATAGCTCCAAAGATCGTTTACGATTACAAAAATGCAAATTGGGAAGGTTTTCGCTCTCATCTTTCCAATGCCCCATGGGGCAATGTATTCTTAGAGAACAATGTTGATCAAATGTGGACTAAATGGAAAGAATTGTTCTTTGCTGCTGTTAATAAAAACATCAATACAcatcatttgaaaagaaaaagaaatgttccTTGGTTAACATCTGCAATTCGTCGCCTTTTTCACAAACGGAAACGCTTATGGAAAAAAGCTAAATCATCTCAACTTCAATCTGACTGGGAAAAATATAGGCAGTGTAGAAACAAAGTCAAATCTGAAATAAACAAGAGCTATTGGCACCATGTTCAGTCTCTTCAAAACAGTAACAATCCTAAACGTTTCTGGACTTTCATAAAATCTAAGACGAAATCACGATCTATTCCACCTGAAGTATCCCTGGAGAACCAAAAGGCTTCAAACAGCTTCGATAAAGCACAGCTATTCAACAACTTCTTCTCATCGGTTTTTATAGAGAGTCCTGGTATTCCTGAGAAGTTACGTGACGATCTTCAACCTTTTACTGATCAAGTCATCTCAAGTCTACTTTGCTCTAAATCTGAGGTCGAGAAATTGCTCATTGGTTTAAACGTTACAAAAGCTCATGGTCCGGATGGGATATCAGCGCGTATGCTTCGCGAGGCTGCACCAGCTATATCAGAGTCCATGACAAATTTATTTAACTTTTCACTCCAATCTGGCACCTTGCCTGTGGAATGGAAATCTGCTCACGTCATTCCAATTTTCAAAAAGGGCCAAAAAGATCTAGTCAAGAATTATCGTGCTATCTCTCTTACGAGTCTGATTGTAAAGACCCTAGAAAGACTGATATACAATCGCATTTTTGGGTTTATTGAATCAAATAATCTACTTAGTAGTCATCAATATGGCTTTCGTCCTGGATACTCCTGTACCTCTCAGTTGATACACCTTTTCCATGAATGGGCCAAAGCACTAGATAAACGCCTCTCTACCGATGTAATATTTCTGGACTTCGAAAAGGCCTTCGACTCAGTTCCTCATGACCGTCTTCTACTCAAACTAGAACGCTTTGGCATTACCGGCTCTCTACTTTCCTGGCTATCCAATTTTCTCCAAGGTCGATCTCAACGTGTTGTAATCGAGGGCTGCCAATCTGACTGGGCGCCTGTCACATCTGGTGTTCCACAGGGGAGCATTCTTGCCCCCCTGTTATTTATCCTATACGTCAATGACATCCCTGAATCTTTATCAAGTCCTGCAGAaatgtttgctgatgatatgTTAATCTATAATTACTGTACTCCATCTCAAACGTCCATCACTGCCCAGGAGAGTCTAGATAAAGTCACTGATTGGTGTGGCTCGTGGCTTTTAGGAACAAATGCTGACAAATGCGAGTCCATGAAGTTCACCAGGGCTAGAACTCCCTCTCCGTGCAACTATTCTATTAATAGCAAGCTACTTACCCAAGTATCTACACACAAACATCTTGGGGTAGTTCTTTCCAGTGATTTATCTTGGAAACCCCACGTACTGTCTGTTGTTGCAAGATCGAACAGATTATTGGGCTTACTCAAGCGGACATTTGGATCTCACTCTAGGGCTCTATTTACTGGTTATAGNTAATTTGAGCTGAAATAACCTCGGCTTCGTTTATTCACTGCTATGAGTTGTAAGGTGTTTGAAATTTTCgatgtttttgaaataaaatgagctCATCACGAGTAAATGTGTTTGGAGATGATGCATCACCAAATGACACAAATCGCGCTCCACGTGAAAAACGCAAACTGCGGTTAACGTTAGAGAGCGTGACTCGTTTCAGACTGAGAACTTGAGCCGTTGCAGCCGCAGAAAAAACTCGAAAATTTTCCAAACGCGAGAGAACAACCAATTTGTTACAAGCGCGAGAAAAATTATGGCCACTTATAACGTAGAACTGACGGGATGAGTAACTCTTTGCAAATGCGGGAAAGTGTTTGACTTGTTTCAAACGTGGAAAAGTCATTTAAGATATTGAAACTGCACGAACATATGAACGTATCTTAGAAACGGGAAATATGTATCTTGTGGGCACGTGAAACGTTAAACGCCTTGCAAACGCTCGGGAAAATAGTTGAAACTCGTGACAAATATCTTAACTCACTACAGACGTGAAAAAAACGTGGCTTGTTGCAAACATGATGAAACTTGTAGCTATCTCCAGGCGCCGAAGGAGAACCCAGCAACCTTTAGCGTGATCTCACGCGGGAGAACACGTAAAACGTGAAAAACGCGTGAAACCTTGGGCGAATGCGGGAAACACATCTATACTAACGCAGTAAACCGTATTTTTAGGTCACATCTGACTAACAGTTTCTAGAAGAACAGCATGTAGTTCAACGACCCTTACAAACGTTTTTCGAGTAACAATGATAAGaataaacttttaaaagtgGATTTTTACGACGAGTCGCAAGAAAACGAAGCGAAAAGATAGACATCTCTTGCAACTTTAGAAGATAGCCATTTTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00241 all species →	Cofilin_ADF	Cofilin/tropomyosin-type actin-binding protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR002108 all species →	Domain	Actin-depolymerising factor homology domain	Interproscan
IPR029006 all species →	Homologous_superfamily	ADF-H/Gelsolin-like domain superfamily	Interproscan
IPR028458 all species →	Family	Twinfilin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13759 all species →	TWINFILIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0003785 all species →	Molecular Function	actin monomer binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005884 all species →	Cellular Component	actin filament	Interproscan
GO:0010591 all species →	Biological Process	regulation of lamellipodium assembly	Interproscan
GO:0010976 all species →	Biological Process	positive regulation of neuron projection development	Interproscan
GO:0030016 all species →	Cellular Component	myofibril	Interproscan
GO:0030042 all species →	Biological Process	actin filament depolymerization	Interproscan
GO:0030837 all species →	Biological Process	negative regulation of actin filament polymerization	Interproscan
GO:0042989 all species →	Biological Process	sequestering of actin monomers	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0051016 all species →	Biological Process	barbed-end actin filament capping	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX21154.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.