Gene detail

Detailed information of PFX21241.1 in Stylophora pistillata

Genomic Location: Spis.scaffold285:334523...351295
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

CYLD

ATGGAACAGCGGCCGACATACTCAGAAGTGAAATTACATGAGAAGGAGCTACAACTGATAGAGATGACACGGCAGCTAGCAAATGCCCAGCAACAATTACAAGAGAAACATGAACAATTGACAAGTGTTCGAAGGCAATTGCAAATAAAAGAGAGTCAACTGACTGAAATGCAGGAAAGTCTTTCCACAGCTCAACATGCCCTAAATGAACGTCAACACCAGGAGTCACCTGACTGGGTGATTCCACGAAATCACATCCAACTGACTGATAAGCTCCTCGGCAAAGGAGGATGGGGAAAGGTTGTGGAAGGGAAGTATTGCGGTTGTGCTGTTGCAGTGAAAACAATCCATGAATTGATTCTCTCCCCTCATAACCGCAGACTGTTTGGGCGAGAAATGAAGATTGCCTCAAGATGCCGTCACCCCTGTTTGCTGCTGTTAATTGGGGCAACAAACGATGACGGAAGTCCTGTATTTATAACAGAACTCATGGAAACTAGTTTAAGAGCACTTATGGAGCAGCGATCACTTTCTTCGACAGAAATCTCCTTTATATCTTTGGATGTGGCTTTGGCATTAAACTACTTGCATCAGAAACAACCCTTGCCCATTATTCATCGTGACATCAGTAGCGCAAATGTGTTGCTATCCCGTCAAGGTAACCAATGGCGAGCTAAAGTATCAGACTACGGAACTGCTAATTTTAAGCAACACACCATGACAGTTGCACCAGGGAATGTGATCTATAGTGCCCCTGAGGCACTCTCAAAGAGTCAAACAGTCAAGGAAGGTTACTTTGGCGTGAACTGCGAATACTCCTGGGTGTTCCCAACAGTTCATGGCACTCACACTGACGAAAACCAAGATGTGAATATTGACGAAGAAATAGACGAAAACCTCCCTCTCGCCTCTGTTCTCCTGCCGCCAAAATCATCCACCGACGAAAATTGTACGCAAAATCCTCCACCATCCGCCGACGAAAATTGTACGCAAAATCCTCCACCATCCACCGACGAAAATTGTACGCAAAATCCTTCACCATCCGCCAACATCTGTACGAAAGATCCTCCATCCTCTCCACCGCCCGACGATTCCAACGAGACTCAGCCACCCTCTCAACCTGAACCGTCTGAGCAACTTTCTCAACCCGAACAGCCTTTGCAACACTCTCAACCCGAACAGCAACACTCTCAACCCGAACTGCCCTCGCACAATCTCTCTGAACAATCTCATCAACCCTCATCCATCTCTTCTGACTCCCCGATTCTGGATCCTCATGGTGTCATTGCTCCCAAACCCATCAAGCCATCATCCCGTCGCACACCTGCTCGCTTGCCTGAACTGTCCCTTGCCTGCACTCGTAAACCTACTACACCTACGCTCACCACTGGAAAGCCACGCTCATCGATACCTGCTCCTACCACAGCCTCCTCTCATCCACTGTATACCCCTGAAACCGAAAATGATATGGAAACCACTCACGATCTCAAAAGAAAATCATCTGATGTTGATGTGTACAGCTTCGGTGTTCTTCTGTGTGAGATGTGTGTCCGAGAACTGCCAGATCCTGAAAGGCTTAAACAACAAGTTGTTATGGTTACAAACCATGAACTGCGAAGTCTCATTCGGAAATGTTTGCAGTTAGAACCAGAGGCGAGGCCAAGTATGGAAGAAATAATTACTGAGCTTCAGCCAGAGGAGAGCAGCCAAATGGTAGTTCCAGCAGATGAGAGCGGTCAGGAATACCAAGGCATACTATTTCCTTCAGATCAGAGGAACCAACAAACAGTTCCTTTTAAAGGTGGAGGAAGCCAAATGACAGTCAACATTCATAACTTTGAGGTTGGATCTATGGTAGAAGTTCCTGTAGCGGATGCCGGTTACACCAGATATGGTGTCATTCGCTGGATTGGAAACCTTCCATCTATAAACAAGCTGGCAGCTGGTTTGGAGTTGGAAGAGGAAGAGTCTGCATGTTCAGATGGGACTTTTCATAAAGAAAGATACTTCACCTGTCCAAGGGGAAGAGGTTTCTTTGTTCTATTGGAGAATTGCCGACCAGATTCCCGGTTTGCTAACTCGTCAACGACTGATGCCAGTTTAAATACTGAAAAAGACTTTGTAAGCATGCGCTCTCCAAAAATAGAAGGCATAACCTTGCCTCGTACTACTCTTGAGGATAGTTACTGTGGCCCCATGCGCGGCCTCCAAGGTCACCATTTCTCTTCCTACCTTGACGCCACACTTTTCAGTATGTTCGCATTCACAAGTGTGTTGGACACCCTGCTGCATCGTCGCAGAAAAGATAATGATTTGGAGGAATATGATCAAGTGCAGCGTGTGCTAAGAAACTTGATTGTCAATCCTCTGAGAGTGTACGGTTTCGTTCGTGCAGACCGCCTTCTTGCGCTGAGACAACTGCTTGACCGGCTCAGCTCCACAGCGGGCCTAATAAATGAAGCAAAAGACCCAGAGGAATTTTTAAACGCTCTCCTGCAACAAGTATTAAAAGAGGATCCATTCCTTCACTTAAAGCCCCGAGATGTACAAGAGAAGAAATGTGAAGGAGCTTTCTTGTACCAAATAATAACTGACAAGGATGAAACGGTGAAAATTGCTCAGGTCCAAACTATGTTAGAGCAGTCTTTTATCTCAGCAGATCTCTTTCTATCTGAGGTACCATCGTGTTTGATTCTTCAGATGCCTCGGTTACGTAACAGACTCAAAGTTTACGAGATGATTCTACCCAATCTGCAACTCGACCTCACTTACATCGTCGAAAATGGAGGAAGAAATGGTTACAATATCCCTGCTATGAAACGTTGTCCTGAAGCACTAGAATGGCTCTCGAAAACTCCCATGGAAATAATTGCAGCAAAGGAGAGAGGCGAGATGCCTGTAAAAGTCCGTAGTCTGCTAGGAGATGGATATCTCTGTATGTACCAGAGATTGGACATGACAATGTACAGTTAA

Transcript

rna-Spis14290_mrna

ATGGAACAGCGGCCGACATACTCAGAAGTGAAATTACATGAGAAGGAGCTACAACTGATAGAGATGACACGGCAGCTAGCAAATGCCCAGCAACAATTACAAGAGAAACATGAACAATTGACAAGTGTTCGAAGGCAATTGCAAATAAAAGAGAGTCAACTGACTGAAATGCAGGAAAGTCTTTCCACAGCTCAACATGCCCTAAATGAACGTCAACACCAGGAGTCACCTGACTGGGTGATTCCACGAAATCACATCCAACTGACTGATAAGCTCCTCGGCAAAGGAGGATGGGGAAAGGTTGTGGAAGGGAAGTATTGCGGTTGTGCTGTTGCAGTGAAAACAATCCATGAATTGATTCTCTCCCCTCATAACCGCAGACTGTTTGGGCGAGAAATGAAGATTGCCTCAAGATGCCGTCACCCCTGTTTGCTGCTGTTAATTGGGGCAACAAACGATGACGGAAGTCCTGTATTTATAACAGAACTCATGGAAACTAGTTTAAGAGCACTTATGGAGCAGCGATCACTTTCTTCGACAGAAATCTCCTTTATATCTTTGGATGTGGCTTTGGCATTAAACTACTTGCATCAGAAACAACCCTTGCCCATTATTCATCGTGACATCAGTAGCGCAAATGTGTTGCTATCCCGTCAAGGTAACCAATGGCGAGCTAAAGTATCAGACTACGGAACTGCTAATTTTAAGCAACACACCATGACAGTTGCACCAGGGAATGTGATCTATAGTGCCCCTGAGGCACTCTCAAAGAGTCAAACAGTCAAGGAAGGTTACTTTGGCGTGAACTGCGAATACTCCTGGGTGTTCCCAACAGTTCATGGCACTCACACTGACGAAAACCAAGATGTGAATATTGACGAAGAAATAGACGAAAACCTCCCTCTCGCCTCTGTTCTCCTGCCGCCAAAATCATCCACCGACGAAAATTGTACGCAAAATCCTCCACCATCCGCCGACGAAAATTGTACGCAAAATCCTCCACCATCCACCGACGAAAATTGTACGCAAAATCCTTCACCATCCGCCAACATCTGTACGAAAGATCCTCCATCCTCTCCACCGCCCGACGATTCCAACGAGACTCAGCCACCCTCTCAACCTGAACCGTCTGAGCAACTTTCTCAACCCGAACAGCCTTTGCAACACTCTCAACCCGAACAGCAACACTCTCAACCCGAACTGCCCTCGCACAATCTCTCTGAACAATCTCATCAACCCTCATCCATCTCTTCTGACTCCCCGATTCTGGATCCTCATGGTGTCATTGCTCCCAAACCCATCAAGCCATCATCCCGTCGCACACCTGCTCGCTTGCCTGAACTGTCCCTTGCCTGCACTCGTAAACCTACTACACCTACGCTCACCACTGGAAAGCCACGCTCATCGATACCTGCTCCTACCACAGCCTCCTCTCATCCACTGTATACCCCTGAAACCGAAAATGATATGGAAACCACTCACgatctcaaaagaaaatcatctgATGTTGATGTGTACAGCTTCGGTGTTCTTCTGTGTGAGATGTGTGTCCGAGAACTGCCAGATCCTGAAAGGCTTAAACAACAAGTTGTTATGGTTACAAACCATGAACTGCGAAGTCTCATTCGGAAATGTTTGCAGTTAGAACCAGAGGCGAGGCCAAGTATGGAAGAAATAATTACTGAGCTTCAGCCAGAGGAGAGCAGCCAAATGGTAGTTCCAGCAGATGAGAGCGGTCAGGAATACCAAGGCATACTATTTCCTTCAGATCAGAGGAACCAACAAACAGTTCCTTTTAAAGGTGGAGGAAGCCAAATGACAGTCAACATTCATAACTTTGAGGTTGGATCTATGGTAGAAGTTCCTGTAGCGGATGCCGGTTACACCAGATATGGTGTCATTCGCTGGATTGGAAACCTTCCATCTATAAACAAGCTGGCAGCTGGTTTGGAGTTGGAAGAGGAAGAGTCTGCATGTTCAGATGGGACTTTTCATAAAGAAAGATACTTCACCTGTCCAAGGGGAAGAGGTTTCTTTGTTCTATTGGAGAATTGCCGACCAGATTCCCGGTTTGCTAACTCGTCAACGACTGATGCCAGTTTAAATACTGAAAAAGACTTTGTAAGCATGCGCTCTCCAAAAATAGAAGGCATAACCTTGCCTCGTACTACTCTTGAGGATAGTTACTGTGGCCCCATGCGCGGCCTCCAAGGTCACCATTTCTCTTCCTACCTTGACGCCACACTTTTCAGTATGTTCGCATTCACAAGTGTGTTGGACACCCTGCTGCATCGTCGCAGAAAAGATAATGATTTGGAGGAATATGATCAAGTGCAGCGTGTGCTAAGAAACTTGATTGTCAATCCTCTGAGAGTGTACGGTTTCGTTCGTGCAGACCGCCTTCTTGCGCTGAGACAACTGCTTGACCGGCTCAGCTCCACAGCGGGCCTAATAAATGAAGCAAAAGACCCAGAGGAATTTTTAAACGCTCTCCTGCAACAAGTATTAAAAGAGGATCCATTCCTTCACTTAAAGCCCCGAGATGTACAAGAGAAGAAATGTGAAGGAGCTTTCTTGTACCAAATAATAACTGACAAGGATGAAACGGTGAAAATTGCTCAGGTCCAAACTATGTTAGAGCAGTCTTTTATCTCAGCAGATCTCTTTCTATCTGAGGTACCATCGTGTTTGATTCTTCAGATGCCTCGGTTACGTAACAGACTCAAAGTTTACGAGATGATTCTACCCAATCTGCAACTCGACCTCACTTACATCGTCGAAAATGGAGGAAGAAATGGTTACAATATCCCTGCTATGAAACGTTGTCCTGAAGCACTAGAATGGCTCTCGAAAACTCCCATGGAAATAATTGCAGCAAAGGAGAGAGGCGAGATGCCTGTAAAAGTCCGTAGTCTGCTAGGAGATGGATATCTCTGTATGTACCAGAGATTGGACATGACAATGTACAGTTAAACCTGGTGAAATGCAACACATTGGAATCACGTTGATACGTAGATCATGCGAGGACTAACCGCTTGTTTAACAGAAAGTCAAGTTAATAGCTCTACACCGCATGAAATGCACGTGTAAAACACGTGTGGAACTGCCAGTCGTCTCTGTACATAACAGTTTTGCGGGAGAAGTGTaggtaaggaaaaattaacaaatgaaatttttcgGGCCCATActtattgtttgtaaacataTATTTCTTAGCCTCGCTCGCGTCTATGTAagtttgtttcttcatttgagacaatagaaaagttttctaacaCTATAATTTCAAGAAAACGATATTTGCATTTACAGCAGAAATAAAGTATTTCAAATAATCTGGAGTGATTTATCCATCGCTTagaaagtgagaaaaatcaGCTTTGAAAGCATGTTGTGATAAGTATATGACActtaaaagcttaaaatttcactttgtacAGTTATAGATCGATAACTTGAATACTGATAGTCACGATAACGTTGTATAAGCTTTTGATGTCTATCGTAGTCATATTCAGCAGAAAATGGAGTCGTAGACGAGTAAAACTTACAGTTCGAGAAGGTTAGCTTTTAGCTGTCTTATTAGGACAATCTGTTAGGCAAAGCAAAATCAGCTAAGATGCAACGGAATCTGATCCTTGTCTGATCCTTGTTTGTCTGATGGATTCTCATTAGAGTCTCAGTGGTACAAGGTAATCCGAAAGGCAGGGGCCCGGTTCCCGAATGAACCAGTAACTTAACGGCCCCGTAAATCTGCTCTGTTTTCATAGCAGAAGGGGTTTAGAAGTTTTGAAAACTACTCAATAAAACTATTgcgtaaagaaagaaaatggactGGTTAGGTTGCTAGAACCTGCTTCCAGCACTTACACGGCGACTTTGGTGCataaaacttaaaggaaaacataagTATGCTACGCGCGTAAGAGTTATTTTTTGTTGGATAGATTGGACAATTTGTGCAACcggtgttttcatttttgtaaaagaaaaacagcataactttacaaaaaagcaaaaatattgcATTACTTCACCGTAACTTTAGAGCGAATAAAATCTAATCCGTTTGAAATAAAC

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001326 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01302 all species →	CAP_GLY	CAP-Gly domain	Domain	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000938 all species →	Domain	CAP Gly-rich domain	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR036859 all species →	Homologous_superfamily	CAP Gly-rich domain superfamily	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR008266 all species →	Active_site	Tyrosine-protein kinase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11830 all species →	40S RIBOSOMAL PROTEIN S3A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0061578 all species →	Molecular Function	K63-linked deubiquitinase activity	Interproscan
GO:0070536 all species →	Biological Process	protein K63-linked deubiquitination	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX21241.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.