Gene detail

Detailed information of PFX21399.1 in Stylophora pistillata

Genomic Location: Spis.scaffold278:294789...305354
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Gene family

Family type	Membership / link
Transcription factor family	HMGA · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02178 all species →	AT_hook	AT hook motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000637 all species →	Conserved_site	HMG-I/HMG-Y, DNA-binding, conserved site	Interproscan
IPR017956 all species →	Conserved_site	AT hook, DNA-binding motif	Interproscan
IPR000116 all species →	Family	High mobility group protein HMGA	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23341 all species →	HIGH MOBILITY GROUP PROTEINS HMG-A AND C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09283	HMGA2; high mobility group AT-hook protein 2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.