Gene detail

Detailed information of PFX21410.1 in Stylophora pistillata

Genomic Location: Spis.scaffold278:143190...160083
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HEXO1

ATGATATCCTGTGTGCTTTTTTTGTCAATTGTTGGACCTTTGTGCGCTTCCTTGAAACGATCGAGTGAGCCTCAAAGAATTGCTGCACCAGATGCTGTTTCAAACTCGTTATGGCCACTTCCAGCTTCCGTGACAGCTTCTGGACCACGTCTTTCAGTTTCTCCAGCATTCGTTATTCAAACATCATCAAAGTCAGGTGTCGTGAAACGCGGAATTACACGTTATTTGGAGATAATACTGCGGAAAATCGGAGGAAATCAAGTGCACAATCCAAGTGAAAAGAGTGAAACGCTGACTGAACTTGTTTTGAATGTGCGTAGTGATGCCGAGATTTTGAGCGTGGAGACCTCTTACTGGTACATGTTGAACATAACCAATGGTCAGGCTAACATAGAAGCCAAAACGCCTTATGGAGCATTAAACAAAGTATCTGGTTTGGTGCTTGTGGACTATGCTAAAGCTTTCGATATGGTTGACCATGAACTTTTGCTAAAGAAACTTGAGGTATATGGTGTCAAAAACCAAGAGCTTAACTGGTGCCAATCGTACCTCTCAGACAGAAAACAGGTGGTCTGTCTAGATGGGAATAAGTCTTCTGAAGCGTTCATGAGGCACGGGGTCCCACAAGGGAGCATTTTAGGCCCCCTTTTTTTCATACTGTTTATAAACGATCTGCCTCTTCATGTGTCAGGTACAATAGACCTTTACGCCGATGACACTACCATCTCAGCCTCAGCGGATGTCAACAATATACCTAGTCTTCAGTCTTCACTCAAGACCTCCTTCGGGGAAATCCAACAATGGGCCATGGCGAATAAGCTCCCTCTTAATGAATCCAAAACCAAAGTTCTCACAGTCACAGGGAAGAGGTTGGCGCCCAGGATCCAGCAGGACGCATTAGTTATTTTAGGAACTAGCCTAAAGGCTTTAGCAAATGTCGACTGTGTTTCACTCTTAGGTCTAAATATTGACAGCGCGCTCTCTTTCAATGCACACGCTGATAAAGTCTGCAAAAAACTGGCTTCGCGTATTGCCGTTTTGCGAAAAATTCGCACGTATTTACCGCTTCCTCAACGCATTCAGTATTACAACTCTATTATTAGTCCGGTTATGAGTTATGTCAGCGCCATCTGGTCAAATTGTGATAAAGAATTGTTATATAGAGTTTTTAAGCTGCAGAAACGCGCTGCTAGAGTCATCCTTTACGCAGAGCGGATGGCTCCATCCGTAGAACTCTTTAATAGACTGAAATGGATTCCTTTTTACGAGAAGTCTGTCTCTGCCAACCTGTCAGCATTTCCTGACCTTACATTTTCTGAGGTTGAAGCGTATGCCCAGAAAGAATCTGGCTGCAGGCACACAATCAAAGGCTATAAGTTTTTCGCTGAACCTGGATATTTACACGATGTGAAAGGTTCTAAAACAGAACAAAATGTTGTTCTCAGTTTTGTGTTCGCAATTGGTTGGAGAAAAGATTATGATAACGAAATACCACGGCGGAGATATTTTCCCCTTGAACTTCTGTATAATATTCTGGATGGCATGAGCTCTGTCAAGTTAAATGTTTTCCACTTCCATTTCGCAGACTTCTGTCGATTCAGTGTCCAAAGCAAACTCTATCCAGATTTAAGAAACAATGAGAGTCAATTTTACTCCCAAGAACAAGTAAAATCTCTGGTGTCTTTTGCCGCCGACAGAGGAATAAGAGTAATTCCAGAAGTAGAATCAGCATTCCATGTCCTTGGAATGATAGGGCTAGAGAACAAAACTAAAGGGCTTTATTTCTGCAATAACTCAATGGGTTATGTTGAGCTGTATAATGATCCAGAGGGAGTTACAATGAACACAATGAAAGGCATTCTTGAAGAAATGATGACACTGTTTCCTGATCAGTACTTCCACCTTGGGTTGGATGAAGTGATTACTACATCCTTGTGTACTTTGGAAAAAACCAAAGAGCTGGAACAGGAGCTGCTCAAATTTCTTCAGCAGAAAGGCAAGACACCATATGCTTGGCAGGAAGCACTATTATCAACAGCTGCGGCAATAAATGGAACAGTACTACAAGCATGGAAAGGTGTATCATTGAAAACTCTCATTGATAAAGGATTTCAAGTGATAAATGCATTGCAGAACTACTTTTACTTGAATGTTCTTTCTAATGCGAGCGTATCATGGACTGACATTGCAACAGGATTAAACCCTAATGAACAGACAATGCTCCTTGGTGGTGAGATGGCAATGTGGACAGATGATTACTGCTTTGTCTCTCAGTGTTTTTTGTACAAAAGGGCCAAACCTGTTGCTTGGTGGATGTATGGGCCAGATGCTGAGTCTCAGTTTACTGAATCAGTCAGTGGCATTATTTGGCCTAGAGCTATTGTTGGTGCTGGCTCTTTTTGGAATTACCAGGCAGACTTGAAACCGGACAGCCCAGAGTTTCAGATGAGAGTTGATAGTCAACATAAGAGAATGATTGAACGAGGCATTCTCACATGTCCTATGGGATGCAAGTGTGACTATCTTAGCAGGTGTGGACAATCCTACCCACACCCTTAA

Transcript

rna-Spis14103_mrna

ATGATATCCTGTGTGCTTTTTTTGTCAATTGTTGGACCTTTGTGCGCTTCCTTGAAACGATCGAGTGAGCCTCAAAGAATTGCTGCACCAGATGCTGTTTCAAACTCGTTATGGCCACTTCCAGCTTCCGTGACAGCTTCTGGACCACGTCTTTCAGTTTCTCCAGCATTCGTTATTCAAACATCATCAAAGTCAGGTGTCGTGAAACGCGGAATTACACGTTATTTGGAGATAATACTGCGGAAAATCGGAGGAAATCAAGTGCACAATCCAAGTGAAAAGAGTGAAACGCTGACTGAACTTGTTTTGAATGTGCGTAGTGATGCCGAGATTTTGAGCGTGGAGACCTCTTACTGGTACATGTTGAACATAACCAATGGTCAGGCTAACATAGAAGCCAAAACGCCTTATGGAGCATTAAACAAAGTATCTGGTTTGGTGCTTGTGGACTATGCTAAAGCTTTCGATATGGTTGACCATGAACTTTTGCTAAAGAAACTTGAGGTATATGGTGTCAAAAACCAAGAGCTTAACTGGTGCCAATCGTACCTCTCAGACAGAAAACAGGTGGTCTGTCTAGATGGGAATAAGTCTTCTGAAGCGTTCATGAGGCACGGGGTCCCACAAGGGAGCATTTTAGGCcccctttttttcatactgtttaTAAACGATCTGCCTCTTCATGTGTCAGGTACAATAGACCTTTACGCCGATGACACTACCATCTCAGCCTCAGCGGATGTCAACAATATACCTAGTCTTCAGTCTTCACTCAAGACCTCCTTCGGGGAAATCCAACAATGGGCCATGGCGAATAAGCTCCCTCTTAAtgaatccaaaaccaaagttctCACAGTCACAGGGAAGAGGTTGGCGCCCAGGATCCAGCAGGACGcattagttattttaggaaCTAGCCTAAAGGCTTTAGCAAATGTCGACTGTGTTTCACTCTTAGGTCTAAATATTGACAGCGCGCTCTCTTTCAATGCACACGCTGATAAAGTCTGCAAAAAACTGGCTTCGCGTATTGCCGTTTTGCGAAAAATTCGCACGTATTTACCGCTTCCTCAACGCATTCAGTATTACAACTCTATTATTAGTCCGGTTATGAGTTATGTCAGCGCCATCTGGTCAAATTGTGATAAAGAATTGTTATATAGAGTTTTTAAGCTGCAGAAACGCGCTGCTAGAGTCATCCTTTACGCAGAGCGGATGGCTCCATCCGTAGAACTCTTTAATAGACTGAAATGGATTCCTTTTTACGAGAAGTCTGTCTCTGCCAACCTGTCAGCATTTCCTGACCTTACATTTTCTGAGGTTGAAGCGTATGCCCAGAAAGAATCTGGCTGCAGGCACACAATCAAAGGCTATAAGTTTTTCGCTGAACCTGGATATTTACACGATGTGAAAGgttctaaaacagaacaaaatgtTGTTCTCAGTTTTGTGTTCGCAATTGGTTGGAGAAAAGATTATGATAACGAAATACCACGGCGGAGATATTTTCCCCTTGAACTTCTGTATAATATTCTGGATGGCATGAGCTCTGTCAAGTTAAATGTTTTCCACTTCCATTTCGCAGACTTCTGTCGATTCAGTGTCCAAAGCAAACTCTATCCAGATTTAAGAAACAATGAGAGTCAATTTTACTCCCAAGAACAAGTAAAATCTCTGGTGTCTTTTGCCGCCGACAGAGGAATAAGAGTAATTCCAGAAGTAGAATCAGCATTCCATGTCCTTGGAATGATAGGGCTAGAGAACAAAACTAAAGGGCTTTATTTCTGCAATAACTCAATGGGTTATGTTGAGCTGTATAATGATCCAGAGGGAGTTACAATGAACACAATGAAAGGCATTCTTGAAGAAATGATGACACTGTTTCCTGATCAGTACTTCCACCTTGGGTTGGATGAAGTGATTACTACATCCTTGTGTACTTTGGAAAAAACCAAAGAGCTGGAACAGGAGCTGCTCAAATTTCTTCAGCAGAAAGGCAAGACACCATATGCTTGGCAGGAAGCACTATTATCAACAGCTGCGGCAATAAATGGAACAGTACTACAAGCATGGAAAGGTGTATCATTGAAAACTCTCATTGATAAAGGATTTCAAGTGATAAATGCATTGCAGAACTACTTTTACTTGAATGTTCTTTCTAATGCGAGCGTATCATGGACTGACATTGCAACAGGATTAAACCCTAATGAACAGACAATGCTCCTTGGTGGTGAGATGGCAATGTGGACAGATGATTACTGCTTTGTCTCTCAGTGTTTTTTGTACAAAAGGGCCAAACCTGTTGCTTGGTGGATGTATGGGCCAGATGCTGAGTCTCAGTTTACTGAATCAGTCAGTGGCATTatttggCCTAGAGCTATTGTTGGTGCTGGCTCTTTTTGGAATTACCAGGCAGACTTGAAACCGGACAGCCCAGAGTTTCAGATGAGAGTTGATAGTCAACATAAGAGAATGATTGAACGAGGCATTCTCACATGTCCTATGGGATGCAAGTGTGACTATCTTAGCAGGTGTGGACAATCCTACCCACAcccttaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14845 all species →	Glycohydro_20b2	beta-acetyl hexosaminidase like	Domain	Interproscan
PF00728 all species →	Glyco_hydro_20	Glycosyl hydrolase family 20, catalytic domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR025705 all species →	Family	Beta-hexosaminidase	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR029018 all species →	Homologous_superfamily	Beta-hexosaminidase-like, domain 2	Interproscan
IPR029019 all species →	Domain	Beta-hexosaminidase, eukaryotic type, N-terminal	Interproscan
IPR015883 all species →	Domain	Glycoside hydrolase family 20, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22600 all species →	BETA-HEXOSAMINIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004563 all species →	Molecular Function	beta-N-acetylhexosaminidase activity	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030203 all species →	Biological Process	glycosaminoglycan metabolic process	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08635	MMEL1, NEP; neprilysin	EC:3.4.24.11	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.