Gene detail

Detailed information of PFX21493.1 in Stylophora pistillata

Genomic Location: Spis.scaffold274:327004...330915
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis14011_mrna

aaacacCTTGGTTCAATGACAAGGCAGAAAACTTGCTGACAAACGTAATCAGACGTTCTCGAATGCATAGGATTGTCCTATATAGCACACAGTGACTCGtagtattcatttcatttctgcGCAATTAACCGATAAGTTTATATCAGTTATTCTGGTGAAACAAAAGAGAAGCGATGGCTCTTTCAGTGAAGGCGTATTTGAACCCTGACACCAATCAACAAGAAATTCGTCGTTTTGCAATTGACGAAGGTGCCTCAGCCAATTTTGCCTATTTGAGGCAGAAGATCGAGCAGGTATTTCCATCCATTAGGGGCAAGGTGTTCAAATTGTTTTGGAAAGATGCCGACAACGAGATGATAACATTTTCAAGCGATGAAGAGCTGATTGAGGCATTGGGAAGTATAAGTGGCGATGTGTTTCGCGTTTTTGTGAAAGGCGGTGAACCAGACGCTGGTAATGTTGaaaactctGCTGAACAACAGGACCCTGGCACTGCTCACCCTGGCGTAGTGTGCGATGGTTGTGATAAGCACATCTTTGGGATCCGCTTCAAGTGTGTGGTTTGCCCAAACTTTGACCTGTGTATGACCTGTGAGACCAAAGGAATGCATAGGGAACATGAGATGCTACGTATTGCAACACCGAGAACTTCTGCAGACAACTGGTTTCCTGGCTTCAACCCATTTGGAGTTGGTCATCCACCTCACCACCCCCCACATGGCCATCCACCTCACCACCCCCCACATGCTCATCCACCTCACCACCCCCCTCATGGTCCTCCTCCTCATGGAATTCCTCCCTTTCAGTATGACTTTGGACGAGGATTTGGTCCATGGGGACGTGGATTTGGCCGTAGGGGGGGCCGTGGTCGTTGTGCCAAGGCTAGAGGCCGTTGTAACAATGGAGGAAAGAAGTGTGATCGCCATACAGAGGCCAACCCTAATGAGGTCCCTGTGGGGCCACCCTTTCTTCATGCTGTTGGAGAGACTATTGCCTCATTTCTTGGGCCACTGGGTGTAGAGGTGCACACATATGCTAGTAGTGAGGAAGATTGTTGTCAAGGCAGATGTCAGGAGGGTGACCAACAAGCCACTGCAGATGCTGGTCCTTCAGGAGAGTCCACAGAACCACAAGTGGATGAAAATGCTCCATCACAAACAGATGAAAAAGAAACCTCTGAAATGGATGTTCAAGCACCAGAGGAGTTTGTTTTGGTTGATGAGAATGCAGAGTCACAAGAGGGAGCCTCTGGAACAGTTGATGAGGAAGTTCCAACTGACCCCTTGGAGGTGGCCATAGCAAAGATGCGTGCAATGGGGTTCGAAGACGATAGTGGCTGGCTGCGGCAACTGATACATGCTAAGGATTATGATCTCAACAAAGTCCTTGATGCCATGCAGTTTGAGGGAAAGAACTGATGGGCATCATACAGTGCATCCTGCTTTACATGTAgtcaagttttttgttttgctgtgggcatttttcagttaattttaGTATTTACTCAGTAGCTTATCCTTGAAAACATGAAGAAATGTCAAAACGTGAAATGTCGACTTCATACAGTTGTTTCAAAACAGATATGTAAGATCTAATGTCTGGTGGCCTTCTGGGAATTATGACTTTATAGCCAAGTGTATCacgttttaattttgtattgataATTGTGGCATTCCAGATAAAAAACTTTTCTGGTGTACTGTCAGAAGAGCCCTTTTCCTCTAAGATTTTGTAATATCTTTTTTTGCTGTAACATTGATAGAAACATCAGTAAGAGGTGAAGAGCCATCAGCATGATAAAGTGCAAGACCAGTTAGGTGTATATATGCCACACAACtggctcaatttttttccctttaaattatCTTTCCTTGTTCCCCTCATAAGAATGCCAAATACAGTGTTTGTTACAGTTGATTACAAGGGGAGAATGGAACCATTTGCTGCCCTGTTCAAATCGTAAGTTGACATTTCATGAGTGGCCTTGCATGCTTTCAACAGGAGTTTTGGATCATGACGGGTGTAGTTACATTGTGCAAGGgttcgatttttcttttaaaaggcaaattaattaaaaatcattaaaaaaaacccattGTAGAAGGGTTCAAGCAGTTGGCGAGAAGATTTTGGTTGTGATTATTAATTATTCAATGTGCTTCACGGTCATGTAATGTGAGTGAGCAATGATACATAGCATTGTAATAAGCTGTGATGCCAAAATAAAGTTCTTCAATG

Protein

Gene family

Family type	Membership / link
Ubiquitin family	ULD\|UFD\|PB1 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16577 all species →	UBA_5	UBA domain	Domain	Interproscan
PF00569 all species →	ZZ	Zinc finger, ZZ type	Domain	Interproscan
PF00564 all species →	PB1	PB1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR000270 all species →	Domain	PB1 domain	Interproscan
IPR033741 all species →	Domain	Sequestosome-1, UBA domain	Interproscan
IPR000433 all species →	Domain	Zinc finger, ZZ-type	Interproscan
IPR043145 all species →	Homologous_superfamily	Zinc finger, ZZ-type superfamily	Interproscan
IPR052260 all species →	Family	Autophagy Receptor and Signaling Regulator	Interproscan
IPR034866 all species →	Domain	Sequestosome-1, PB1 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15090 all species →	SEQUESTOSOME 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000423 all species →	Biological Process	mitophagy	Interproscan
GO:0005080 all species →	Molecular Function	protein kinase C binding	Interproscan
GO:0007032 all species →	Biological Process	endosome organization	Interproscan
GO:0016235 all species →	Cellular Component	aggresome	Interproscan
GO:0035973 all species →	Biological Process	aggrephagy	Interproscan
GO:0044753 all species →	Cellular Component	amphisome	Interproscan
GO:0070530 all species →	Molecular Function	K63-linked polyubiquitin modification-dependent protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14381	SQSTM1; sequestosome 1	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.