Gene detail

Detailed information of PFX21686.1 in Stylophora pistillata

Genomic Location: Spis.scaffold267:136627...150259
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Acin1

ATGGCTGAACGGGAGATTACAATCGGAGGAAGGCGACTTTCTCAATTGAAAGTCGATGAACTTAAAGTTGAGCTGGAAAAACGCGGCCTCAAGAAAAGTGGAAACAAAGGGGTTCTTATTGAGAGGCTACAAGAGGCCATTGACAAGGAAATGGAAATGAAAGAAGGGTTTGAGAGCTATCCTGTTCCACAGCAAGCTCCTGCACGGGTGAGAGAGCCTTGGCCTCATTCCATGATGCAGCAACAGCAACAACCTGGTGGTTTCCCTGTCCAGCCTATGGGTATTCCACAAGGAGTGATAAATCAGCAACAGGGATTGTTGAATCAACCTCGTGTTATGATGAACCAGCAGCAGATGATGATGCACCAGCAACAGCAAATAACCTCACCTGTTCAAGTGAAGGAATTCAGAGAACAGTGGCCTCAAGCCCAAATTCCACCACCCCAAATGATATATCAACAACCACGAGAACAACAAGCCTTGAATCAATTATCTCCAATGGCAGACAAGAAACCTTTAGCACATGCTTTGAATCATCAAGTTCCTCAGCCTGTCGTTGAACCAGAGGTTGAGTCATCAAGCTCATCAGATAATGAGCAGGACTCTGCTCAACAGTCTTCAAGTTCATCAAGCCAGGAATCAGATGATCATGAACAGGAACGACCCACATCACTGTTGAACTATAATTATTCCAATGATTCGAGGACTGAGGTAAAGGTTACCCCTGTAGTTGCAGAGGAAAGCAAATCTATCCCAGTTCAGAATGTTGAGGAGCAGTCAAAGGAATCTGTGTCTATGGCTCCAAAAGAAGAAGAGATGATGAAAGAGGAAGATATGGTTGCTAATGAGAGACCAGAGTTAGGACAAGATGAAAAAGCAGATGTTGAAATGGAAGGAGAAAGGAAAGTTGCAGAACAAAAGGAGATTGATGTTAAAGATGATGAAAAGAAAGAGGTTGTTGAGGAACGTGAGGATGGAGGGCAAAATGAAGCTGTTGGTGAGGAAAAGGAAGGGGACGTGTCTAGTGAGTCTCTTAAGAAGAAAGCAGCAGTTTCACCACCATCTCCTGCAGAAGAAAACACTTTTGAAGTTGAGCCAAGTGAAGAGGACAAAGCTGTTGTGGAGGAGCCAAAAATTCCATCACCACAGAAGCCTACCTCTCCAGTTGTAACCAAGAAAAGAAAAATAAACATACCAAGAACGTCTCTGCCTACCACTCCTACATCTGAGGGTCAACCAGGGTCAAGGAAAAGGAGATGGGGATCATCAACATCAAGCAAGAAAACATCTTTGTCCATTAGCACTGATTCACTTAAGGATCTTATTCCAGGAGTGCAAGTGCACACTACCCCTGCTCTGGAAGCAGTCATGGATATAAGAGGTGATGATAATGATGAAGAAGAGGAGGAACCAGAAGAAAAGAGAAAGACTGAACAGAAAACTGAGGAGGAGAAAGAAGAAATATCAGCAGAAACAATACCAGAAGTGAAAGACGAGGGAAGGAGAAGAAAAGACAGAATTGTGAAGGTGGAAGAGAAGAAGACTATCAAGCTTCAAAGGAAGCTTGTTGTCATGGAAACTGAACCGGAAGGATTAAAAATGGAGGTTGAGGAAGAGCCTTCAGAGCACAAACCGGAAGATAATCCATATCCGAGGGGGTTGTCAGCCCCAGTCCAAGAGGAATCCCCACTAGCAGCAGGGAAGCGTTCCCCGTCGCCCGCTAAAAATCCCCGGTGTAAGACACTTCATGTCAAGAACCTCGTGCGACCTTTCACACAGAACCAGCTCAAAGACCTGCTTGGCAAACATGGAACCTTGGTGGAGAATGGATTTTGGATCGATAGGATAAAGTCACATTGCTACGTTGTGTACACTGATGAGGATGATGCAGTGGCCACCAGACAAGCCCTGCATGGTATCAAGTGGCCGGCAACAAGTCCAAAAATCCTTGATGTTGATTACGCTGATGAGGATGAGATGGCGCGAGATACAGAAGGTTTTCTCGGTCGCAAGAAGGAAAAAGAACGAGAAGCGAATGCGGAGAAGGATGAAATAAAAGAACCTTCAGTCGAAGAAGAAAAGCCGATGGAAACAGAAGAAAAAGAAGAAGAAGAAGAAGAAGATCTGAAGAACGCTGGTAACCTGCTAGATAATCTGTTCAAAAAAACGAAGACCATACCCTGCTTGTACTGGCTGCCACTGACAGATGAACAGATCGCGACAAGAGAACGGGAAAGAGAGGAAAGACGGAAAGCTAGACAGGAAGAAAGAGACAAAGAGGAACAAGAACGCAAAGAAAGACAGCAACAACGAGAGAAAGAGCGGGAATTGGAGCGTGAGAAAGACAAACGGGAACGGGACACTGCAGAGAAACAGCGCTCACGATCCCCAAGAAATCGACGGCGAGAACGAAGCAAAAGCCGAAGTAGAAGTCGGGGACCGAGGCGGCGATGA

Transcript

rna-Spis13821_mrna

caacatggctgAACGGGAGATTACAATCGGAGGAAGGCGACTTTCTCAATTGAAAGTCGATGAACTTAAAGTTGAGCTGGAAAAACGCGGCCTCAAGAAAAGTGGAAACAAAGGGGTTCTTATTGAGAGGCTACAAGAGGCCATTGACAAGGAAATGGAAATGAAAGAAGGGTTTGAGAGCTATCCTGTTCCACAGCAAGCTCCTGCACGGGTGAGAGAGCCTTGGCCTCATTCCATGatgcagcaacagcaacaacctGGTGGTTTCCCTGTCCAGCCTATGGGTATTCCACAAGGAGTGATAAATCAGCAACAGGGATTGTTGAATCAACCTCGTGTTATGATGAACCAGCAGCAGATGATGATGCACCAGCAACAGCAAATAACCTCACCTGTTCAAGTGAAGGAATTCAGAGAACAGTGGCCTCAAGCCCAAATTCCACCACCCCAAATGATATATCAACAACCACGAGAACAACAAGCCTTGAATCAATTATCTCCAATGGCAGACAAGAAACCTTTAGCACATGCTTTGAATCATCAAGTTCCTCAGCCTGTCGTTGAACCAGAGGTTGAGTCATCAAGCTCATCAGATAATGAGCAGGACTCTGCTCAACAGTCTTCAAGTTCATCAAGCCAGGAATCAGATGATCATGAACAGGAACGACCCACATCACTGTTGAACTATAATTATTCCAATGATTCGAGGACTGAGGTAAAGGTTACCCCTGTAGTTGCAGAGGAAAGCAAATCTATCCCAGTTCAGAATGTTGAGGAGCAGTCAAAGGAATCTGTGTCTATGGCTCCAAAAGAAGAAGAGATGATGAAAGAGGAAGATATGGTTGCTAATGAGAGACCAGAGTTAGGACAAGATGAAAAAGCAGATGTTGAAATGGAAGGAGAAAGGAAAGTTGCAGAACAAAAGGAGATTGATGTTAAagatgatgaaaagaaagaggTTGTTGAGGAACGTGAGGATGGAGGGCAAAATGAAGCTGTTGGTGAGGAAAAGGAAGGGGACGTGTCTAGTGAGTCTCTTAAGAAGAAAGCAGCAGTTTCACCACCATCTCCTGCAGAAGAAAACACTTTTGAAGTTGAGCCAAGTGAAGAGGACAAAGCTGTTGTGGAGGAGCCAAAAATTCCATCACCACAGAAGCCTACCTCTCCAGTTGtaaccaagaaaagaaaaataaacataccAAGAACGTCTCTGCCTACCACTCCTACATCTGAGGGTCAACCAGGGTCAAGGAAAAGGAGATGGGGATCATCAACATCAAGCAAGAAAACATCTTTGTCCATTAGCACTGATTCACTTAAGGATCTTATTCCAGGAGTGCAAGTGCACACTACCCCTGCTCTGGAAGCAGTCATGGATATAAGaggtgatgataatgatgaagaagaggaggaaccagaagaaaagagaaagactGAACAGAAAACTGAGgaggagaaagaagaaatatcAGCAGAAACAATACCAGAAGTGAAAGACGAGGGAAGGAGAAGAAAAGACAGAATTGTGAAGGTGGAAGAGAAGAAGACTATCAAGCTTCAAAGGAAGCTTGTTGTCATGGAAACTGAACCGGAAGGATTAAAAATGGAGGTTGAGGAAGAGCCTTCAGAGCACAAACCGGAAGATAATCCATATCCGAGGGGGTTGTCAGCCCCAGTCCAAGAGGAATCCCCACTAGCAGCAGGGAAGCGTTCCCCGTCGCCCGCTAAAAATCCCCGGTGTAAGACACTTCATGTCAAGAACCTCGTGCGACCTTTCACACAGAACCAGCTCAAAGACCTGCTTGGCAAACATGGAACCTTGGTGGAGAATGGATTTTGGATCGATAGGATAAAGTCACATTGCTACGTTGTGTACACTGATGAGGATGATGCAGTGGCCACCAGACAAGCCCTGCATGGTATCAAGTGGCCGGCAACAAGTCCAAAAATCCTTGATGTTGATTACGCTGATGAGGATGAGATGGCGCGAGATACAGAAGGTTTTCTCGGTcgcaagaaggaaaaagaacgAGAAGCGAATGCGGAGaaggatgaaataaaagaaCCTTCAGTCGAAGAAGAAAAGCCGAtggaaacagaagaaaaagaagaagaagaagaagaagatctGAAGAACGCTGGTAACCTGCTAGATAATCTGTTCAAAAAAACGAAGACCATACCCTGCTTGTACTGGCTGCCACTGACAGATGAACAGaTCGCGACAAGAGAACGGGAAAGAGAGGAAAGACGGAAAGCTAGACAGGAAGAAAGAGACAAAGAGGAACAAGAACGCAAAGAAAGACAGCAACAACGAGAGAAAGAGCGGGAATTGGAGCGTGAGAAAGACAAACGGGAACGGGACACTGCAGAGAAACAGCGCTCACGATCCCCAAGAAATCGACGGCGAGAACGAAGCAAAAGCCGAAGTAGAAGTCGGGGACCGAGGCGGCGATGAGTTGACAGTCCGACCTATTATACCTACGTTGAATAGATAGTTTTaagttggttttgtttttgatccATCTAAGGGTCGACTTCAGGTCTCTCTTTAAAAATTAACCACTAAGTTAATTTTACTTGGCACATTAGTACTCGAGAAAGGCCTGTTTATGGCAGCTCTTAGTATTTCATCCCGATATCAAGCGACTATGGGGAAGCTTTTCCTTACATCTGTTGCTTCTATTCATTCAACAGTTGACGTTAATAGCTTTTTACGAACCATAGTGATTGGTTGAGTCATGCTGTCATTTTAGTCACGTGACCGTGGTTTCGTCCGTCTTCAAaaatactgtttattttttaacggTTTTTAGGAAGGATTAGTGAGAGtttcttttctcctcttcaGGAATTTGCCACAATATTTCTTGATATCGTAGACAGATTCAACGCTTTCTGTTTTTAAGTACTCATACACTGAATTCTTTCTGTAGATGTTTTCTGCCCACGAGGCATTTAGTTCTTTCTGTTTGGAAGGAACAAGTGAAATGGGAGAAGTGTTTCCTTGCGTAAGTGACTGATCATTCATATTGTCTCAAGGTCACAAATAAATTCGGAGATTTTGTAGtgatttgctttgtttgtttgttttttttttattttgttttcgcAACACATTCTACTTCCGGGAAGTAAGTGATATTACTACCTTGCTCTTAATCTGCAAGATATTATGTGAGATTTATGGAAAACTCGTGAATAAACTAAAC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16294 all species →	RSB_motif	RNSP1-SAP18 binding (RSB) motif	Motif	Interproscan
PF02037 all species →	SAP	SAP domain	Domain	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003034 all species →	Domain	SAP domain	Interproscan
IPR036361 all species →	Homologous_superfamily	SAP domain superfamily	Interproscan
IPR032552 all species →	Conserved_site	Acin1, RNSP1-SAP18 binding (RSB) motif	Interproscan
IPR034257 all species →	Domain	Acinus, RNA recognition motif	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR052793 all species →	Family	Exon junction complex-associated protein	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46589 all species →	APOPTOTIC CHROMATIN CONDENSATION INDUCER IN THE NUCLEUS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008380 all species →	Biological Process	RNA splicing	Interproscan
GO:0061574 all species →	Cellular Component	ASAP complex	Interproscan
GO:0071011 all species →	Cellular Component	precatalytic spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12875	ACIN1, ACINUS; apoptotic chromatin condensation inducer in the nucleus	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.