Gene detail

Detailed information of PFX21835.1 in Stylophora pistillata

Genomic Location: Spis.scaffold261:204703...223235
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

RPUSD2

ATGGCTGACGAGATTCAATTAGAGCCCGGAGTCGCGGCACTTTTCGAAGACTCAGGGGATGAAGGAAGCTTTGATGGATTCGATGAGCTAGATAGGAATAGGTTAAATTTAAGTAATGATTCGGATTTAGATTTAGATGGTTTAGAGGCTGAAGACGATGACACAGATGCTGAAGAAGAAGAAGCTCGCTGGACTGACCAGCTCGACGACATCCAAGTTCCCCAGTTCGTGGNCGCTGCACTAGTATCACAGAGGTTTGCGATGTGTCCATCCTTATTTCTTCACTTTCACTACCTACTGCAAGGGACGCTGGTGAATGGTGAAGTAACATCTCAAATTAGAATTCTTAAAGACAATGATGTGATTAGAAACAAAGTCCACAGACATGAACCTCCTGTAACAGGGAATCCTTTAAAAATCATTGCATTAACAGATGAAATTGTTGTGCTTGATAAACCTTCTTCAATTCCAGTACACCCTTGTGGCAGGTACAGGCACAACACTGTTGTATTCCTTCTTGGAAAGGAGTTTGGATTGACAAATCTTTTTACAATTCACCGTATTGACCGTCTCACTTCAGGAATTTTGATGTTTGCAAGAACACTGTCAAAGGCTCAGGAGCTTGAGAGTCAAGTGAGAAACAGACAAATAGAGAAGGAATACATTTGTAGAGTGCAAGGAGAATTTCCAAGTGAGGAAGTTGTGTGTGAGGAGCCAATAAAAGTTGTTACACACAAGATTGGTGTGTGCCGAGTTTGTACAAGTGAGGGCAAGCCATGTAGAACTGTTTTTAAAAGGCTCAACTATGATGGAAAGACAAGTATTGTGAAAAAGGTTAGTTCGGGAAGAGAATTTTATGGGCATTCACCAACTCAGTTGACTGCACTAGGTGTCCCACATACAGGCAGGATGCATCAAATCCGTGTTCATCTTCAGTGGCTTGGTTATCCAATTGTAAATGATCCAATATATAACCACCAGTCATGGGGACCCCTCAGGGGTAGAGGTGGGGTGTCCGATCGCCTGGTACGTCAGGTGATTGCAGAGCTTGTTAAATCTTCAAACATCATAAACGCTGAGAGCGGAACCTTTCGTGAAGAAGACCTTTCTCGCCAACATCAACAAAACTCAAGCAATATGAAACACGAAGCAGTCACTAACATTGAAAATGAATCACTGAGGCGCCACTGCACTGGAAATAAAGATAGTGTCAGCGCGGAATCTCAGTCTTGTATAGATAACGAAGAGAAAAACACAGAACTGTACTATGACGATGACTGTAGTGAATGCCAGATACAGAGGAGAGATCCAACTTCTGATGAACTCACCATGTGTTTACATGCTCTCTCTTACAAGCTCTTTGGCATACAAAGCTCTGCTTTCATGTCCAAATTGAGCACCGTGGGATGGGTCATCGCCGCTAGCATTGTGCATAGCTCACTAGGCTCTTCTAGTTTGAGCACTCTGACCTTAGACGAACCACAAGTGTGGGATCGTTTGGAGATCCATATCTGTTCTCCCCCATCCTGGCATCAGCACTGCACTGATGAGGCCCAGAAGGCCGAAACAGTGCAAAGTCGACACCGCGGAATGGCGCTCAGCCGACCACGGCCTTTGTTCGCTCACCGGCGTACTGTTCGCCTTGTAATGGAAGATTCTATGGAACTGGACTCATTGAATATTGCCAAGTCCCTGCCAGACTTCGCTAAACACATACGCGGAATTGTGCCACAATTCGGAGGCAAATGCTTCGATATCACCTTAGAATCAGCTGAAAAAGCTGCTGAACTCGCAAACGCCAGTTTTGACTACGGCGACGTGCGAAAACCCCTCCGTTTGCTAGGCAAACGCTCAATTAATGTGTCTGTGTTCGTCTCCGTGGAATTCCCGGACGAGGAACTGGTCAAGCTCCTCTCCACCTATGGGGAATTAAAATCCGCTAACCTACGCCGCCTACACTATCCGGAGGCTGGTTATACGCATATTGAAAATGGCATCAGGGTCGCCGAGTTTACCGCAATCGAGAGAGATATTCCTAAACGCCTCGTGGTCGGTGGCGTTAATATCGGGTTCAAATATACAGGTCAACCCAACACGTGCTATCACTGTCACTCAACCGAGCACGTGGTGAGAAATTGTCCTAAACGCCGCCGGCCACCCCTTGCCCCACAACCGACCCCAGCCCCGGCTGGTGAATTTGACCCAGACCCCGCGGCCGAAGCCGATATGGATAACAACGCTGCTACAAGCGACTGGGCGGCCAACAGCGAAGAGCTTTTCTCCCCATCAACCTACGCCGAAGCCGCTGCCAGTCAAAACTCCTGCATGGATCTCACCCCTTCGCCCCCGGCTTCGGGACGCAAACGAGAAGCTCCCCAGGTCAGCAGCGAGAGGAGAGCGTACCAGCAAAACATTTTGCTTCAACCTCTGACCCAGAATCCCAGTGTGGGGAAAGCGAGCCAGATGCAACGGCCACCAGTACAGAAACCCCCAGTGATTCATCCCCTCCTCAACCGCCCCCGAACAGAGGACTGA

Transcript

rna-Spis13676_mrna

ATGGCTGACGAGATTCAATTAGAGCCCGGAGTCGCGGCACTTTTCGAAGACTCAGGGGATGAAGGAAGCTTTGATGGATTCGATGAGCTAGATAGGAATAGGTTAAATTTAAGTAATGATTCGGATTTAGATTTAGATGGTTTAGAGGCTGAAGACGATGACACAGatgctgaagaagaagaagctcGCTGGACTGACCAGCTCGACGACATCCAAGTTCCCCAGTTCGTGGNcgctgcactagtatcacagagGTTTGCGATGTGTCCATCCTTATTTCTTCACTTTCACTACCTACTGCAAGGGACGCTGGTGAATGGTGAAGTAACATCTCAAATTAGAATTCTTAAAGACAATGATGTGATTAGAAACAAAGTCCACAGACATGAACCTCCTGTAACAGGGAATCCTTTAAAAATCATTGCATTAACAGATGAAATTGTTGTGCTTGATAAACCTTCTTCAATTCCAGTACACCCTTGTGGCAGGTACAGGCACAACACTGTTGTATTCCTTCTTGGAAAGGAGTTTGGATTGACAAATCTTTTTACAATTCACCGTATTGACCGTCTCACTTCAGGAATTTTGATGTTTGCAAGAACACTGTCAAAGGCTCAGGAGCTTGAGAGTCAAGTGAGAAACAGACAAATAGAGAAGGAATACATTTGTAGAGTGCAAGGAGAATTTCCAAGTGAGGAAGTTGTGTGTGAGGAGCCAATAAAAGTTGTTACACACAAGATTGGTGTGTGCCGAGTTTGTACAAGTGAGGGCAAGCCATGTAGAACTGTTTTTAAAAGGCTCAACTATGATGGAAAGACAAGTATTGTGAAAAAGGTTAGTTCGGGAAGAGAATTTTATGGGCATTCACCAACTCAGTTGACTGCACTAGgtGTCCCACATACAGGCAGGATGCATCAAATCCGTGTTCATCTTCAGTGGCTTGGTTATCCAATTGTAAATGATCCAATATATAACCACCAGTCATGGGGACCCCTCAGGGGTAGAGGTGGGGTGTCCGATCGCCTGGTACGTCAGGTGATTGCAGAGCTTGTTAAATCTTCAAACATCATAAACGCTGAGAGCGGAACCTTTCGTGAAGAAGACCTTTCTCGCCAACATCAACAAAACTCAAGCAATATGAAACACGAAGCAGTCACTAACATTGAAAATGAATCACTGAGGCGCCACTGCACTGGAAATAAAGATAGTGTCAGCGCGGAATCTCAGTCTTGTATAGATAACGAAGAGAAAAACACAGAACTGTACTATGACGATGACTGTAGTGAATGCCAGATACAGAGGAGAGATCCAACTTCTGATGAACTCACCATGTGTTTACATGCTCTCTCTTACAAGctctttggcatacaaagctctgctttcatgtccaaattgagcaccGTGGGATGGGTCATCgccgctagcattgtgcatagctcactaggctcttctagtttgagcactctgacCTTAGACGaaccacaagtgtgggatcgtttggagaTCCATATCTGTTCTCCCCCATCCtggcatcagcactgcactgatgaggcccagaaggccgaaacagtgcAAAGTCGACACCGCGGAATGGCGCTCAGCCGACCACGGCCTTTGTTCGCTCACCGGCGTACTGTTCGCCTTGTAATGGAAGATTCTATGGAACTGGACTCATTGAATATTGCCAAGTCCCTGCCAGACTTCGCTAAACACATACGCGGAATTGTGCCACAATTCGGAGGCAAATGCTTCGATATCACCTTAGAATCAGCTGAAAAAGCTGCTGAACTCGCAAACGCCAGTTTTGACTACGGCGACGTGCGAAAACCCCTCCGTTTGCTAGGCAAACGCTCAATTAATGTGTCTGTGTTCGTCTCCGTGGAATTCCCGGACGAGGAACTGGTCAAGCTCCTCTCCACCTATGGGGAATTAAAATCCGCTAACCTACGCCGCCTACACTATCCGGAGGCTGGTTATACGCATATTGAAAATGGCATCAGGGTCGCCGAGTTTACCGCAATCGAGAGAGATATTCCTAAACGCCTCGTGGTCGGTGGCGTTAATATCGGGTTCAAATATACAGGTCAACCCAACACGTGCTATCACTGTCACTCAACCGAGCACGTGGTGAGAAATTGTCCTAAACGCCGCCGGCCACCCCTTGCCCCACAACCGACCCCAGCCCCGGCTGGTGAATTTGACCCAGACCCCGCGGCCGAAGCCGATATGGATAACAACGCTGCTACAAGCGACTGGGCGGCCAACAGCGAAGAGCTTTTCTCCCCATCAACCTACGCCGAAGCCGCTGCCAGTCAAAACTCCTGCATGGATCTCACCCCTTCGCCCCCGGCTTCGGGACGCAAACGAGAAGCTCCCCAGGTCAGCAGCGAGAGGAGAGCGTACcagcaaaacattttgcttCAACCTCTGACCCAGAATCCCAGTGTGGGGAAAGCGAGCCAGATGCAACGGCCACCAGTACAGAAACCCCCAGTGATTCATCCCCTCCTCAACCGCCCCCGAACAGAGGACTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00849 all species →	PseudoU_synth_2	RNA pseudouridylate synthase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006145 all species →	Domain	Pseudouridine synthase, RsuA/RluA-like	Interproscan
IPR050188 all species →	Family	RluA Pseudouridine Synthase	Interproscan
IPR020103 all species →	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR006224 all species →	Conserved_site	Pseudouridine synthase, RluA-like, conserved site	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21600 all species →	MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001522 all species →	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0009451 all species →	Biological Process	RNA modification	Interproscan
GO:0009982 all species →	Molecular Function	pseudouridine synthase activity	Interproscan
GO:0000455 all species →	Biological Process	enzyme-directed rRNA pseudouridine synthesis	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX21835.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.