Gene detail

Detailed information of PFX21960.1 in Stylophora pistillata

Genomic Location: Spis.scaffold257:50936...95856
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Kdm6a

ATGGCCAGGGCAGTTGATCAAAGGAGAAGTCATTCTGCAGTGAATATCATATCAATAGATATTGGAACAACCACAATCGGTTGCCATCATTTTGATAGCTCGGGAATCTCTTTGTACCACACATCAAGAAAGGTTGAACTTCTTTATCCCCAGCTGGGAGGGGTCGAGTTAGACCCAGATGTGTTATGGGAGCAGTTTGTTGATGTTATTACTGAGGTCATGGAAGCATCAAATCTTCAAGCAGAGGATGTCACAGCCCTGGGGATCTCCACTATGAGAGGAACATTTATAACTTGGGACAGAAAGACTGGTAAACCCTACCACAACTTTATCAGTTGGCAAGACATGAGAGCAGGAAATTGTGTCGAGAGTTGGAATAAATCTCTTACTCTAAAGAGTTTGAATGTGGGGTCTAAATTTCTTCACATGATCTCAAGACAAAAGAAATACTTGGCTGGAAGTGTCATTAGCTTTTCAACACAACATACGTCAATTAGGCTTCACTGGTTATTCAAGACCCATCCAGATCTTGCCAAAAAGGCAGATATGGGTGTTCTGGCATTTGGAACCATTGACTCTTGGCTGATCTGGAAACTAACCAAGGGTCAGCTTCATGTGACAGATTACTCCAATGCAAGTGGTACAGGGATGTTTGATCCTTTTATTGTTGCAGACCAACAGGCCGCAGTGTTTGGACAGTGTTGTTTTGACGCAGGGGATGTGAATTGTACAATGGGAACTGGATCTTTTCTAGATATAAATACAGGCTCATATCCACATGCGTCTGTAGCAGGCTTTTACGACGATGTCTCAAAGACAAGCGAAATGGCTTTTTCTGTGGAAACCTCAGGTGGAGTTTACTTTGTTCCCGCTTTCAATGGATTACAAGCTCCCATTAATGACAATAAAGCTTGCGTTTCGCTGATGGGAATAAAATCCACCACTAACAAAGCTCACATAACAAGAGCTATTTTGGAGTCAATAGCTTTCAGGTTTACTCAGCTGTACGAGACTGTGGTTGGAGAGACCCATATCCCATTAATGTCGTCAATCAAAGTTGACGGCGGAATTTCTAACAACGACTTTGTGTTGGAATTAATGAGCAGTTTAACTTGTCAGACGATAGATCGACCCTCTCAGACCGACATGTCCACTTTAGGTGCAGCCTTCTTGGCTGGTCTCTCAGCTGGTGTTTGGAAGTCACGTGACGAGTTGAAAGCAATCCGTTGTTCCCAGGCCCTCTTTCAACCGAAGGCATCCATACGAGACAAATTCCTGAAGAATTATGACGAATGGAAAGAGGCCCTACATAGGAGTAAAAACTGCCGATTGTACGGATTTTTGCGAATTCAGGACCCAGTTGGAGATCCATCTTTGCCTGACCTGAACCACAAATCGTTATTGCTTAAGGGTGTAGCATTTCTCGAGAAAGAATTGCAACGAGAAGGGAAGTCAGTACATCCCTCCACATTCTGTAGACTGGGACACATTCACCTGTTGCTTGACGACTTTCCTAAAGCGCTTTCAGCTTACCAAAGGTTCTTTAACGTTCAACAGGTCGATTATTGGAAGGATGCAACATTTCTTTATGGCCTAGGGATTGTTTATTTTAATTTCTCAGCATATCCCTGGGCAGTAAAGATTTTTCAGCAAGTGTTGTACATAGATCCCAGCTTTAATTGTTCCAATGAAGTTCATCTCAGACTGGGGATCATACTCAAAGAACAAGGAAGCTGTGAAGCTAGTATTAAACATTTTCAGATGGCATTAATGGATTCCAGTCCTTGTTCATTATCTAAAGTTGAAATCCGCTTTCACCTGGGACACCTTTTCGAGATGCAGAACAAGTGTGATTTAGCACAGGAAATGTACGAGACAATCATAGAGAGTCCTAACACACCTAATGCTGTCAGGGCTAATGCTTACAAACAATTAGGATGGATGTATTACAACAAAGAGCACCTGGGGGACAGAACATCCAGAATGGAAAAAGCTGTCCAGTTGTTACTGAAAGCTATTGAGACAGATCCAAACAGTGGTGCTGCATGGTATCTAATTGGCAGGTGTTACGCCATGCAAGGAAAAGTTCATGATGCCTTCACTTCATACCGTCATGCCATTGATAAGTCAGAGGCAAATGCCGATACATGGTGCTCCATAGGTGATGCGATTGCATGTTACAGTGCTGCTAGGAAATATGGTGCAACTGATAATACAATTGAGGCTCGAGTCAAGGCACTGCAAGCCCAGCTGGCTATGATGCCTCAGCAAGGGAAAGCACAAAAGAAGAATATTCCATCTGTCGATGAGGCTTGGCAGTTACCTATTCCAGCAGAGCTTACAACAAGGACAATAAGGAATGCACAAGTAAAGCTATTAACAAGTGCTCAGATGCAAGGTCTACAGCAACAACAACTACAACAAATATACTTACAACAACAACAACAACAACAACAACAGGTTACAGAGCCAAACAATGCACAGGCTCATAGTGCAGTTCCTATGGAGAATGCAGTCATGTATTCTGGTAAAAATATGGCGAACCATGTTTCTTTGCAGGACGGGAAGGGTGAAAATCATGATGGACTTAATCAAGCTTCTGTTCCTGCTTCAAGCTCAGGAGAAAACTGGTCTAATGCAGTACAACCACAAAATGGTCAAATTTTGGTTTCGACATGCTCTGAAAATCAATTTGCCAAATCTACCGACAGTTTGACACAAACTGTTACATCTATCATCGCAACTCAAGGAATTACGCTTTCATTACCTGGGCCGTTCTCGCAGTCAGAGTCAATTTTCACCGAGGCGCACAGTAATTCAACCGTTGCTGCCATGGAAACCTCTCTTGCAGGGGGTGATCCTATGATGGCAGTGACCGAAGAGCACAATTCTATAGCAGGGTCTAATGCGTTAACGATTACTTCTCCTCTTTCAAACTTTGTTTCAACGTCATCTAATGCTACAATGTTTAATTCGAGTGCTCCAAGTAGTGAAGGAACAATTCTTCTTCAAGGTGAATCTGGAACTACAGCAACTTGTGAACAATCTTTATCAAACGAAATGCATTCCGCTCTTTTGAATGAAATAAATTGTACTGCTGATGTGAAGCCAAGCCCGTTAACAGGAACGAGTGACCCCACACTTAGCAATGGACCCATGTCAACGTACACGGGATTTCCAAGTTCAGCTGCCGGAGCAGCAAGTGGATTATCAACAATTTCTCCTTTCTCACCCCCAAGTCATTATGTCATGTCGCCAACACAAAAATCGCCTTTTCACCCGACCGCATCTCAGCTCTCCCCCAGTCTAACTCAACCTTTGTCTATCATCAACCCAAGCTGTTTATCGCCAAGTTCAGGTCTACAGGGAGGGCAGTCTGCTTTCTCTCCAGCTTCTCTTATTCCAACGGATCTCTTATCTCCATCAAAACAACTCGCAGTCATCTCGCCTAGCTCGTCATCCAAGTCACCGTTCAACCTCAGCACGGGGGGTGATAATTTGGCTGTTCCAAAATTGAACTTGCTGTTTGATTCCAATGCGTTACCGCACCCTCCAGACACTCCACTCCCTCCTCTTCCTACCGACAAGTTGTCGCCACAGACGCCAAGTATTTATGTTGAAAACAAGAAAGATGCATTTTCACCAGCACTTCAAAACTTGGTGCTGAGTAATTCAAATCCCATCCTAGTGATCAGAGGGTTAGCAGCGGCACTTAGATTAGATCTTAGTTTGTTTTCAACGAAGACTCTTGTTGAAACAAATGGTGAACACCAAGTAGAAGTCAGGACACAGAGACTTCAAGCGTCAGACGAAAACTGGGATGCTGCTGGTGAAAACAAGGTCTGGCTGTGTGAGAGCAGCAGGTCTTATACAACCATTGCAAAGTATGCCCAGTATCAGGCGAACTCGTTTCAAGAGTCTTTGAAGGAGGAGCAGGACAGACAAGCCGGAATCAAAGAACCATCGCAATCAGACAGTGATTCATCGTCAAGCTCCAAGAAAGATAAAATAAATACCTCACTAACCTCGTTTTTCTCTGTCCGAACTGTGGTGAGTCCTGGGAACATGTTAAGCCATATTGGTCATACAATTCTTGGCATGAACTCAGTGCAGTTGTACATGAAGATACCCGGATGCAGGACACCAGGTCATCAAGAAAACAATAATTTTTACGCCATAAATATCAACATTGGACCGGGAGACTCGGAATGGTTTGCAATTCCAACCGAATATTGGGGCGTTTTGCACAACTTGTGTGAAAAGAATAACGTCAATTTTCTAACAGGCTCATGGTGGCCCATTCTGGAGGAACTCTACGAGGAGCGTGTTCCAGTGTACAGATTCATACAAAGGCCTGGTGACCTGGTCTGGCTTAGTCCTGGGGTGGTGCATTGGGTGCAGTCGTCGGGCTGGTGTAACAATATTGCCTGGAATGTCGGTCCTCTTACAGAGGATATGTACACAGCAGCCATCGAAAGATATGAATGGAACAAACTACAAGGTGAGAAGTCCATTGTGGCTATGCTGCACTTGTCATGGAATCTCGCTAGAAATGTTAAAGTTACAGAAAGAAAGTTGTTTGAACACATCAGAGTTGTGCTGGCCAGGTCACTTAGGTATTGTCAGATTACTGTGGAGAAACTAAAGCATGCTGGTATTGATGTGGTGTGGCATGGCAAAAGACAAAATGAAGGATCTCATTACTGTGCCCAGTGCGAGGTGGAGGTTTTCAATATTCTGTTCGTGACAGGAACCAAGAAACACTCGGTCTATTGTCAAGATTGCGCTAGAAAGACCAGCGGTGATCTTGCTGGATTTACAGTTCTCAATCAGTACATGCTTGAGGAGCTGACTGAAGTGTACAATAGTTTTAAATTACATGCGTTCAATGAAGCGTCATCTGTGCACGATCATTTCAATGTTAATCTTCCCAGGCTGTAG

Transcript

rna-Spis13538_mrna

ATGGCCAGGGCAGTTGATCAAAGGAGAAGTCATTCTGCAGTGAATATCATATCAATAGATATTGGAACAACCACAATCGGTTGCCATCATTTTGATAGCTCGGGAATCTCTTTGTACCACACATCAAGAAAGgTTGAACTTCTTTATCCCCAGCTGGGAGGGGTCGAGTTAGACCCAGATGTGTTATGGGAGCAGTTTGTTGATGTTATTACTGAGGTCAtggaagcaTCAAATCTTCAAGCAGAGGATGTCACAGCCCTGGGGATCTCCACTATGAGAGGAACATTTATAACTTGGGACAGAAAGACTGGTAAACCCTACCACAACTTTATCAGTTGGCAAGACATGAGAGCAGGAAATTGTGTCGAGAGTTGGAATAAATCTCTTACTCTAAAGAGTTTGAATGTGGGGTCTAAATTTCTTCACATGATCTCAAGACAAAAGAAATACTTGGCTGGAAGTGTCATTAGCTTTTCAACACAACATacgTCAATTAGGCTTCACTGGTTATTCAAGACCCATCCAGATCTTGCCAAAAAGGCAGATATGGGTGTTCTGGCATTTGGAACCATTGACTCTTGGCTGATCTGGAAACTAACCAAGGGTCAGCTTCATGTGACAGATTACTCCAATGCAAGTGGTACAGGGATGTTTGATCCTTTTATtGTTGCAGACCAACAGGCCGCAGTGTTTGGACAGTGTTGTTTTGACGCAGGGGATGTGAATTGTACAATGGGAACTGGATCTTTTCTAGATATAAATACAGGCTCATATCCACATGCGTCTGTAGCAGGCTTTTACGACGATGTCTCAAAGACAAGCGAAATGGCTTTTTCTGTGGAAACCTCAGGTGGAGTTTACTTTGTTCCCGCTTTCAATGGATTACAAGCTCCCATTAATGACAATAAAGCTTGCGTTTCGCTGATGGGAATAAAATCCACCACTAACAAAGCTCACATAACAAGAGCTATTTTGGAGTCAATAGCTTTCAGGTTTACTCAGCTGTACGAGACTGTGGTTGGAGAGACCCATATCCCATTAATGTCGTCAATcaaAGTTGACGGCGGAATTTCTAACAACGACTTTGTGTTGGAATTAATGAGCAGTTTAACTTGTCAGACGATAGATCGACCCTCTCAGACCGACATGTCCACTTTAGGTGCAGCCTTCTTGGCTGGTCTCTCAGCTGGTGTTTGGAAGTCACGTGACGAGTTGAAAGCAATCCGTTGTTCCCAGGCCCTCTTTCAACCGAAGGCATCCATACGAGACAAATTCCTGAAGAATTATGACGAATGGAAAGAGGCCCTACATAGGAGTAAAAACTGCCGATTGTACGGATTTTTGCGAATTCAGGACCCAGTTGGAGATCCATCTTTGCCTGACCTGAACCACAAATCGTTATTGCTTAAGGGTGTAGCATTTCTCGAGAAAGAATTGCAACGAGAAGGGAAGTCAGTACATCCCTCCACATTCTGTAGACTGGGACACATTCACCTGTTGCTTGACGACTTTCCTAAAGcGCTTTCAGCTTACCAAAGGTTCTTTAACGTTCAACAGGTCGATTATTGGAAGGATGCAACATTTCTTTATGGCCTAGggattgtttattttaatttctcagcATATCCCTGGGCAGTAAAGATTTTTCAGCAAGTGTTGTACATAGATCCCAGCTTTAATTGTTCCAATGAAGTTCATCTCAGACTGGGGATCATACTCAAAGAACAAGGAAGCTGTGAAGCTAGTATTAAACATTTTCAGATGGCATTAATGGATTCCAGTCCTTGTTCATTATCTAAAGTTGAAATCCGCTTTCACCTGGGACACCTTTTCGAGATGCAGAACAAGTGTGATTTAGCACAGGAAATGTACGAGACAATCATAGAGAGTCCTAACACACCTAATGCTGTCAGGGCTAATGCTTACAAACAATTAGGATGGATGTATTACAACAAAGAGCACCTGGGGGACAGAACATCCAGAATGGAAAAAGCTGTCCAGTTGTTACTGAAAGCTATTGAGACAGATCCAAACAGTGGTGCTGCATGGTATCTAATTGGCAGgTGTTACGCCATGCAAGGAAAAGTTCATGATGCCTTCACTTCATACCGTCATGCCATTGATAAGTCAGAGGCAAATGCCGATACATGGTGCTCCATAGGTGATGCGATTGCATGTTACAGTGCTGCTAGGAAATATGGTGCAACTGATAATACAATTGAGGCTCGAGTCAAGGCACTGCAAGCCCAGCTGGCTATGATGCCTCAGCAAGGGAAAGCACAAAAGAAgAATATTCCATCTGTCGATGAGGCTTGGCAGTTACCTATTCCAGCAGAGCTTACAACAAGGACAATAAGGAATGCACAAGTAAAGCTATTAACAAGTGCTCAGATGCAAGGTCTACAgcaacaacaactacaacaaatatacttacaacaacaacaacaacaacaacaacaggttACAGAGCCAAACAATGCACAGGCTCATAGTGCAGTTCCTATGGAGAATGCAGTCATGTATTCTGGTAAAAATATGGCGAACCATGTTTCTTTGCAGGACGGGAAGGGTGAAAATCATGATGGACTTAATCAAGCTTCTGTTCCTGCTTCAAGCTCAGGAGAAAACTGGTCTAATGCAGTACAACCACAAAATGGTCAAATTTTGGTTTCGACATGCTCTGAAAATCAATTTGCCAAATCTACCGACAGTTTGACACAAACTGTTACATCTATCATCGCAACTCAAGGAATTACGCTTTCATTACCTGGGCCGTTCTCGCAGTCAGAGTCAATTTTCACCGAGGCGCACAGTAATTCAACCGTTGCTGCCATGGAAACCTCTCTTGCAGGGGGTGATCCTATGATGGCAGTGACCGAAGAGCACAATTCTATAGCAGGGTCTAATGCGTTAACGATTACTTCTCCTCTTTCAAACTTTGTTTCAACGTCATCTAATGCTACAATGTTTAATTCGAGTGCTCCAAGTAGTGAAGGAACAATTCTTCTTCAAGGTGAATCTGGAACTACAGCAACTTGTGAACAATCTTTATCAAACGAAATGCATTCCGctcttttgaatgaaataaattgtaCTGCTGATGTGAAGCCAAGCCCGTTAACAGGAACGAGTGACCCCACACTTAGCAATGGACCCATGTCAACGTACACGGGATTTCCAAGTTCAGCTGCCGGAGCAGCAAGTGGATTATCAACAATTTCTCCTTTCTCACCCCCAAGTCATTATGTCATGTCGCCAACACAAAAATCGCCTTTTCACCCGACCGCATCTCAGCTCTCCCCCAGTCTAACTCAACCTTTGTCTATCATCAACCCAAGCTGTTTATCGCCAAGTTCAGGTCTACAGGGAGGGCAGTCTGCTTTCTCTCCAGCTTCTCTTATTCCAACGGATCTCTTATCTCCATCAAAACAACTCGCAGTCATCTCGCCTAGCTCGTCATCCAAGTCACCGTTCAACCTCAGCACGGGGGGTGATAATTTGGCTGTTCCAAAATTGAACTTGCTGTTTGATTCCAATGCGTTACCGCACCCTCCAGACACTCCACTCCCTCCTCTTCCTACCGACAAGTTGTCGCCACAGACGCCAAGTATTTATgttgaaaacaagaaagatgcATTTTCACCAGCACTTCAAAACTTGGTGCTGAGTAATTCAAATCCCATCCTAGTGATCAGAGGGTTAGCAGCGGCACTTAGATTAGATCTTAGTTTGTTTTCAACGAAGACTCTTGTTgaaacaaatggtgaacaccaaGTAGAAGTCAGGACACAGAGACTTCAAGCGTCAGACGAAAACTGGGATGCTGCTGGTGAAAACAAGGTCTGGCTGTGTGAGAGCAGCAGgTCTTATACAACCATTGCAAAGTATGCCCAGTATCAGGCGAACTCGTTTCAAGAGTCTTTGAAGGAGGAGCAGGACAGACAAGCCGGAATCAAAGAACCATCGCAATCAGACAGTGATTCATCGTCAAGCTCCAAGAAagataaaataaataccTCACTAACCTCGTTTTTCTCTGTCCGAACTGTGGTGAGTCCTGGGAACATGTTAAGCCATATTGGTCATACAATTCTTGGCATGAACTCAGTGCAGTTGTACATGAAGATACCCGGATGCAGGACACCAGGTcatcaagaaaacaataatttttacgCCATAAATATCAACATTGGACCGGGAGACTCGGAATGGTTTGCAATTCCAACCGAATATTGGGGCGTTTTGCACAACTTGTGTGAAAAGAATAACGTCAATTTTCTAACAGGCTCATGGTGGCCCATTCTGGAGGAACTCTACGAGGAGCGTGTTCCAGTGTACAGATTCATACAAAGGCCTGGTGACCTGGTCTGGCTTAGTCCTGGGGTGGTGCATTGGGTGCAGTCGTCGGGCTGGTGTAACAATATTGCCTGGAATGTCGGTCCTCTTACAGAGGATATGTACACAGCAGCCATCGAAAGATATGAATGGAACAAACTACAAGGTGAGAAGTCCATTGTGGCTATGCTGCACTTGTCATGGAATCTCGCTAGAAATGTTAAAGTTACAGAAAGAAAGTTGTTTGAACACATCAGAGTTGTGCTGGCCAGGTCACTTAGGTATTGTCAGATTACTGTGGAGAAACTAAAGCATGCTGGTATTGATGTGGTGTGGCATGGCAAAAGACAAAATGAAGGATCTCATTACTGTGCCCAGTGCGAGGTGGAGGTTTTCAATATTCTGTTCGTGACAGGAACCAAGAAACACTCGGTCTATTGTCAAGATTGCGCTAGAAAGACCAGCGGTGATCTTGCTGGATTTACAGTTCTCAATCAgTACATGCTTGAGGAGCTGACTGAAGTGTACAATAGTTTTAAATTACATGCGTTCAATGAAGCGTCATCTGTGCACGATCATTTCAATGTTAATCTTCCCAGGCTGTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00370 all species →	FGGY_N	FGGY family of carbohydrate kinases, N-terminal domain	Domain	Interproscan
PF21322 all species →	KDM6_C-hel	Lysine-specific demethylase 6/UTY, C-terminal helical domain	Domain	Interproscan
PF13431 all species →	TPR_17	Tetratricopeptide repeat	Repeat	Interproscan
PF02373 all species →	JmjC	JmjC domain, hydroxylase	Domain	Interproscan
PF21326 all species →	KDM6_GATAL	KDM6, GATA-like	Domain	Interproscan
PF02782 all species →	FGGY_C	FGGY family of carbohydrate kinases, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018484 all species →	Domain	Carbohydrate kinase FGGY, N-terminal	Interproscan
IPR048562 all species →	Domain	Lysine-specific demethylase 6A/B-like, C-terminal helical domain	Interproscan
IPR003347 all species →	Domain	JmjC domain	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR048560 all species →	Domain	Lysine-specific demethylase 6A/B-like, GATA-like	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR046941 all species →	Homologous_superfamily	Lysine-specific demethylase 6, GATA-like domain superfamily	Interproscan
IPR051630 all species →	Family	Transcriptional Corepressor and Histone Demethylase	Interproscan
IPR018485 all species →	Domain	Carbohydrate kinase FGGY, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14017 all species →	LYSINE-SPECIFIC DEMETHYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan
GO:0031490 all species →	Molecular Function	chromatin DNA binding	Interproscan
GO:0044666 all species →	Cellular Component	MLL3/4 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11447	UTX, KDM6A; lysine-specific demethylase 6A	EC:1.14.11.68	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.