Gene detail

Detailed information of PFX22008.1 in Stylophora pistillata

Genomic Location: Spis.scaffold255:131416...143998
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BTBD8

ATGAACTCTGCGCCGTTTCTTAAGAGCAAGGCTTTTAAGGAAAGAGAAGAAACTGCAAGAGAAAAGCTACGGCAAGCTGCCAAGCGAGATCTACTCGCAGATCTATCCAGGTTGTTTGGAGACACATCCTTTAGTGATGTCACATTTATGATAAATGATGTTGAATTTCAAGCCCATGCAGTTGTTCTCAGAGCAAGAGCTCCAATTTTCTGTCAACATTTTCTTCCAAGATATGCCTCCCCAGTTTCTGTCCAAACATACATCCAAATAAATGGAATAGAGGCCAGTGAGTTTGAGAAATTTTTAAGGTCTGCTTATACACAAGATGATTTTAAAGATTACAATGGATCAAGCCACCCTTGGAGAAAAGAAAACATATCAAGTGTAGTAGATGGAATTGACCATGTTGTTGAAAGTGAACTTAAAGAGGACAGTTACAGTTGTAAAATATTTGAAAATGATACTGGTAGAATTCATGACAAGCTTCAAAAAAATGCCCAGTCAGAGGTCTGCGCAGGGAAGGAAAGTACTGTGCAAGCACCAATGGAGCCAGAGGAATTTTTTGGCAGTGATGCTACTTGCACTCAGTCGTATTGTAACATGAATGGTAATAGGTCAGGAACTGTTGGTGACAGCAATGTAATGGGAAGTTCTGAAAGAGAAGATCCTAGTCAACCTACAGATAATGATTATCAGTCCGACTCCAAACTGCCACAAGCAAGTTGTATGAGTAATGATGGAGGAATTGATTCACATCTTAAGTTATGTGACTATTTTACTGTTGACTGTGGTGACATGCCAGAGACTGATGCATTAGATGTAAATCAGCAGCAACACAATTTGGAAGCAAATCTTCATAGTAGTGATTCAGTTGATGGCCCTGGTAATGTGGTTGAAGAGGAAAATGTAGAATCAAACTGCCTTGCAAATGGATTGGGATGTGACTCGCATGTTACACACTCAAGCTGTCTCTTTAAGAACCAGGTTGCTGAAGTCAAGACAACAATTGAAACAAATTATGGAGTGACTTCAGCTGGTGGCAGGATTTTGGAGAATAGTTTCAAAACAAAGCGAGATCTTGCTCCACCAGTGAATGAACCATCAGTAGATGAATTAAAGAGCTGCAGTTGTACTCTTGGCCAAGATTTACTTCAGTTGTTGATGAGTGAAGTTGGATCTGATGTTGTCTTTGTAGTCAATGGAAGCAAAGTTAAAGCTCACAAAGCTATTCTATGTGCACGATCTAATTACTTCTCAGCCATGCTGTATGGTGACTGGATTGAAGGGAAAACTAATGAGATTCCTCTGATTGGTGTGAATTACAATGGTTTCATGGCTGTCCTGAAGTATATTTATGGAGGAACAGCTCACTTGACGGGTGATTTTGCACTCATATGTGATGCACTTCCTCTTGTGGACATGTATGGGCTGGAAGGACTTAGAGAAATCATTAATTGTACTTTAAAAATAGACAAGTGTCATATGTTTCACAAGCCTTGTGCAGAATGTCTGACTGGTGTTCCTGAGTGCTTGGAAGTATCAGAGTTGTTTAGTCTTACTGAACTCAAGAAATCTTGCATCAAGTGGATGGCAAAACACTTTGATCGTACTATGGGTACTAAGGGATTCGCTGCACTTCCCAAGCCACTCCAGGAAGAAATTTTGGCTGAAATCCAGAGAAGCTTTGTCGTAGCATCAGGCATAGAAGTCTTGAATCAGTGTGACAAACTGTCTTCATGTACACCACTGGTCAAGTGGACTGAGCCTGTTCACATGGCTGTTTCTGCTGTCCAAGAATCTTGTCTGTTGTTTTTGACTCGGAACTTTTTCTCTTTAATTGATGAAAGGAGCTTTCATGAAATTTTAAAGGGAGTAGGTTGGTCAGTGCCTGTTTTGGAAAAAATTCTTTTTGCAATCAAGAGGAACCTAACTATTGAAAATTGCTGCGACCAACTGAGGGCCATTCTCAAGCTACAAAGGGTTCTCAAAGTGAAGGCACTGGAGGAGGATGAGGAATGCTATCCAGAGGAAGTAGCTGATCTTGTGATAAATTTACACAATGACTGCGTCAAGTTTATCAAATCCAACCTTTTTAAAGTCACCCGATCAGAAGGATGGAAGAAATTAAAGCTTACTACCAAACGGGAGGTAAAGGAAGGTGCGGTTTTTAGTGGTCTGTTTGATTCAGGTGAAAATCTTAGTGGAACAAGGAGAAGCGCACTGAGTTCTTTACAAACGTCCGCTAGGCCATCAACTATGAGAGCTTTTCAACGAGTTGCAACTGAATCTTTGGCGAGAGGACAAGGGAGAGGGAACTCTGTTTCGGACAGGAGCTCTCAGCGTAGTCACCGTAGTAGGCCCACGTCAGGTAGGAGCTCCCAAAACAGTATTGGACTTGCGCCTACGAATATGCGGCCTTCCTCAGGACGGTCCACGACTGTTAAGAATAGTGTCAAATCAGTCCGTGGAAAAATATCTTCCGCGACGAGCAGTGATTCTGGAAAGAGACCTTCGTCATCTCGGGCTTCAATGCCCGTGGAGAGCTCAGGAATTTCTTCTTCGTTGACAAGAAACTATGATGGAAACTTGCTAACTAACTCACGATCTACTCAAAATTCTTCAGCATCAGGCCATAGGGGAACACCATCAAAGACCTCTTCTGCTCAAAGCTCTCATCAACACACTGCAACATCTGGTAACAGTACGAGGTCTTTACGGAATCAAAATAGTTCCAACGCGAGGCTCTCGTCTGCTAAAAAAAAATCTGGCGCTATAAGAAAGGTCCCATTAGTTTCCAGGCCGCCTGTATTGAAAGGCACTAACCGAGATATTAACAGTACCTCATCAAAGCGAATCGTAAGAGACAAGCCCCTTTCTGCACAGGGCTGTGTGGCACAAACTAAAAAGGTAAAAAAAAACTCAAAGAAGGTTTCGGAAAACGCTAAGGCGAATAAACTGTCTAAAAAAAAAAAAGGGATGAGTTCAAGAAAGAGTCAAGACCTAACAAATGGATCAGAGGCTAGCAATGAACCGAGACTAAGAGAAAGTGTCCAAGCGACAGAGGATGGAATTAGTAGAACGAGAAAAATAGAGGAATTCTCAGACAACAATAAAGACAATGGTGTTTCACATAAGGGATCACAAGGTGGTGCCCAGTCAAAGAGTTCAGAGGAGCAGAAGCAGTGTGCTACGTCAACAGGGGAGTGGACTCCAGAAAACAGGGAGGAAGGTTCATCACTCTTCAATGAAGCAGCTTGTGAGAACGTTTCCCAGTAA

Transcript

rna-Spis13487_mrna

ATGAACTCTGCGCCGTTTCTTAAGAGCAAGGCTTTtaaggaaagagaagaaactgCAAGAGAAAAGCTACGGCAAGCTGCCAAGCGAGATCTACTCGCAGATCTATCCAGGTTGTTTGGAGACACATCCTTTAGTGATGTCACATTTATGATAAATGATGTTGAATTTCAAGCCCATGCAGTTGTTCTCAGAGCAAGAGCTCCAATTTTCTGTCAACATTTTCTTCCAAGATATGCCTCCCCAGTTTCTGTCCAAACATACATCCAAATAAATGGAATAGAGGCCAGTGAGTTTGAGAAATTTTTAAGgtCTGCTTATACACAAGATGATTTTAAAGATTACAATGGATCAAGCCACCcttggagaaaagaaaacatatcaaGTGTAGTAGATGGAATTGACCATGTTGTTGAAAGTGAACTTAAAGAGGACAGTTAcagttgtaaaatatttgaaaatgatacTGGTAGAATTCATGACAAGCTTCAAAAAAATGCCCAGTCAGAGGTCTGCGCAGGGAAGGAAAGTACTGTGCAAGCACCAATGGAGCCAGAGGAATTTTTTGGCAGTGATGCTACTTGCACTCAGTCGTATTGTAACATGAATGGTAATAGGTCAGGAACTGTTGGTGACAGCAATGTAATGGGAAGTTCTGAAAGAGAAGATCCTAGTCAACCTACAGATAATGATTATCAGTCCGACTCCAAACTGCCACAAGCAAGTTGTATGAGTAATGATGGAGGAATTGATTCACATCTTAAGTTATGTGACTATTTTACTGTTGACTGTGGTGACATGCCAGAGACTGATGCATTAGATGTAAATCAGCAGCAACACAATTTGGAAGCAAATCTTCATAGTAGTGATTCAGTTGATGGCCCTGGTAATGTGGTTGAAGAGGAAAATGTAGAATCAAACTGCCTTGCAAATGGATTGGGATGTGACTCGCATGTTACACACTCAAGCTGTCTCTTTAAGAACCAGGTTGCTGAAGTCAAGAcaacaattgaaacaaattatGGAGTGACTTCAGCTGGTGGCAGGATTTTGGAGAATAGTTTCAAAACAAAGCGAGatCTTGCTCCACCAGTGAATGAACCATCAGTAGATGAATTAAAGAGCTGCAGTTGTACTCTTGGCCAAGATTTACTTCAGTTGTTGATGAGTGAAGTTGGATCTGATGTTGTCTTTGTAGTCAATGGAAGCAAAGTTAAAGCTCACAAAGCTATTCTATGTGCACGATCTAATTACTTCTCAGCCATGCTGTATGGTGACTGGATTGAAGGGAAAACTAATGAGATTCCTCTGATTGGtgTGAATTACAATGGTTTCATGGCTGTCCTGAAGTATATTTATGGAGGAACAGCTCACTTGACGGGTGATTTTGCACTCATATGTGATGCACTTCCTCTTGTGGACATGTATGGGCTGGAAGGACTTAGAGAAATCATTAATTGTACTTTAAAAATAGACAAGTGTCATATGTTTCACAAGCCTTGTGCAGAATGTCTGACTGGTGTTCCTGAGTGCTTGGAAGTATCAGAGTTGTTTAGTCTTACTGAACTCAAGAAATCTTGCATCAAGTGGATGGCAAAACACTTTGATCGTACTATGGGTACTAAGGGATTCGCTGCACTTCCCAAGCCACTCCAGGAAGAAATTTTGGCTGAAATCCAGAGAAGCTTTGTCGTAGCATCAGGCATAGAAGTCTTGAATCAGTGTGACAAACTGTCTTCATGTACACCACTGGTCAAGTGGACTGAGCCTGTTCACATGGCTGTTTCTGCTGTCCAAGAATCTTGTCTGTTGTTTTTGACTCGgaactttttctctttaattgatGAAAGGAGctttcatgaaattttaaagGGAGTAGGTTGGTCAGTGcctgttttggaaaaaattctttttgcaaTCAAGAGGAACCTAACTATTGAAAATTGCTGCGACCAACTGAGGGCCATTCTCAAGCTACAAAGGGTTCTCAAAGTGAAGGCACTGGAGGAGGATGAGGAATGCTATCCAGAGgaAGTAGCTGATCTTGTGATAAATTTACACAATGACTGCGTCAAGTTTATCAAATCCAACCTTTTTAAAGTCACCCGATCAGAAGGATGGAAGAAATTAAAGCTTACTACCAAACGGGAGGTAAAGGAAGGTGCGGTTTTTAGTGGTCTGTTTGATTCAGGTGAAAATCTTAGTGGAACAAGGAGAAGCGCACTGAGTTCTTTACAAACGTCCGCTAGGCCATCAACTATGAGAGCTTTTCAACGAGTTGCAACTGAATCTTTGGCGAGAGGACAAGGGAGAGGGAACTCTGTTTCGGACAGGAGCTCTCAGCGTAGTCACCGTAGTAGGCCCACGTCAGGTAGGAGCTCCCAAAACAGTATTGGACTTGCGCCTACGAATATGCGGCCTTCCTCAGGACGGTCCACGACTGTTAAGAATAGTGTCAAATCAGTCCGTGGAAAAATATCTTCCGCGACGAGCAGTGATTCTGGAAAGAGACCTTCGTCATCTCGGGCTTCAATGCCCGTGGAGAGCTCAGGAATTTCTTCTTCGTTGACAAGAAACTATGATGGAAACTTGCTAACTAACTCACGATCTACTCAAAATTCTTCAGCATCAGGCCATAGGGGAACACCATCAAAGACCTCTTCTGCTCAAAGCTCTCATCAACACACTGCAACATCTGGTAACAGTACGAGGTCTTTACGGAATCAAAATAGTTCCAACGCGAGGCTCTCgtctgctaaaaaaaaatctggcgCTATAAGAAAGGTCCCATTAGTTTCCAGGCCGCCTGTATTGAAAGGCACTAACCGAGATATTAACAGTACCTCATCAAAGCGAATCGTAAGAGACAAGCCCCTTTCTGCACAGGGCTGTGTGGCACAAactaaaaaggtaaaaaaaaactcaaagaagGTTTCGGAAAACGCTAAGGCGAATAAactgtctaaaaaaaaaaaagggatgagTTCAAGAAAGAGTCAAGACCTAACAAATGGATCAGAGGCTAGCAATGAACCGAGACTAAGAGAAAGTGTCCAAGCGACAGAGGATGGAATTAGTAGAACGAGAAAAATAGAGGAATTCTCAGACAACAATAAAGACAATGGTGTTTCACATAAGGGATCACAAGGTGGTGCCCAGTCAAAGAGTTCAGAGGAGCAGAAGCAGTGTGCTACGTCAACAGGGGAGTGGACTCCAGAAAACAGGGAGGAAGGTTCATCACTCTTCAATGAAGCAGCTTGTGAGAACGTTTCCCAGTAAAAAAAAGATGACCCTTTGAAGAACCCTAAAGTCAATGATTCACTGGAACTCGactaaattgaattttttttaagtttgctaTAAATATTGGTGAGTCTCCTGGTGTGTCCTCCCTTAAAGGAACCTAAATCGTGCACGGAAAAGCGATACTAGTAAAAAAAAGGTGCTCCTTGGATGTAGTAGTAGCATCATTAGTGTATTTTTGGGAATGAGGCAAGCTGTACATTAACCGAAAGTTGCCTCTATCGCCCTtggtataaaaaaaatgaattgacaACCTTCCAGTGTGAAAACATTAAAGAATTTGTAATAATTAAAATCGAAAAGCCAG

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 adaptor Cullin RING\|BTB · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00651 all species →	BTB	BTB/POZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR043225 all species →	Domain	BTBD8, BACK domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22427 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10480	BTBD8; BTB/POZ domain-containing protein 8	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.