Gene detail

Detailed information of PFX22206.1 in Stylophora pistillata

Genomic Location: Spis.scaffold247:333169...339950
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis13285_mrna

GGCGAATTAAGGATTCGGAtgtgaaaacaaatgaacaatCATTGTGCACCACAGAAAGAAAGTTTGGGCTCTGTTTAAAAAGCGTTGTCGATGGACAGCACGTCCATTATAACGCAAGTTAATAAGGACGATGAGTCGGCAGAAGTGAGCCCCTACACACAAAACAAACTCCCTTCATCAGTCTCCAAAAAGCCAAGGAATCGGAacatattttcctcttttttctgctgttttggcgcCCAGTctgctgctgctactgctgctgGAGGCCCATACAGAACTGCAGTCACCCACACAAATCACAACCATAACCACAACCACAATGAAAATTCGCTTAGTATCTCTACTGAAGAAAAAGAGCCCAAGccTTGTAAATATCTACTACCTGCTGTCAGACATCAGGATATGCACAAAAAATGCATTGTTATAGACCTTGATGAAACATTGGTCCACAGTTCATTTAAGCCTGTCCATAATGCAGATTTCATAGTTCCTGTGGAGATTGATGGGACAGTTCATCAGGTCTATGTGTTAAAGAGGCCTCACGTTGATGAGTTTCTTCGCAGAGTTGGGGAGTTGTTTGAATGCGTTCTATTCACTGCTAGCTTATCAAAGTATGCTGACCCAGTTGCTGACTTGCTGGACAAGCATAAATCTTTTCGAGCCAGGCTCTTTAGAGAGTCTTGTGTGTTTCATAGAGGAAATTATGTGAAGGATCTTAGTAAACTAGGAAGGGATTTAAAAAAGGTCCTTATTGTGGACAACTCACCAGCATCATACAGTTTCCATCCAGAGAATGCAATTCCAGTTGCGTCATGGTTTGACGACTTTTCAGACATGGAGCTTTTAGAATTAATTCCCTTCCTTGAATCAATAAGTGAAGCTGATGATGTCTGTGCATATTTGAGAAATGCAAACATGAACATCCTAAAAGGAAGATGTAATTCCTTGGAACTCAACACCAGTAGCTGAATTTCAAGTACACCTGAGATTTGTAATTAAagcattttacaatttttttctgtaacatATCCACATATGAAAGTTCtgaaattcaatattttatcaaaaaattaagTGACACAGATCAATGTTATTCTCCTTACCTCTCCTGATTTGGGCAGAAGTCATTTAGTTTACCTTGTTCACAAAATTTTAGGTACCCTTGTTTGTCTCATAAAAATTTGGATCATTTTTATCATTCCATTTGCAAAGGTatttggtcttttaatttaaaagtgaCCAGTCTGAAAGGCTTAACCATACCAACttctaaccctttaactccggagatctgattgtgaattctcctttcttttctcttcaagTTTCCTTATACAATTGTTGGGgtaatttggtgtttgatcaagatatcaacttctgtataaatttgagtattctcatcacctgattgcaggataatgtatgggtattttagggagaaataacttgttaatcacttctgggagttaaagagttaactacagtatatatatatatatatatagatcacAATACTCTAAGAACCTATGACacatttttgtttgaattttggttattttgtatTCAATTTTGAACCAAGAcatgaattttgtttgttaaatgaAGTGTACATAGAACATACAGCTTTTTCGCTTTTAAAAATTGAACAGATTGTTATTCAAATCTTCAAACGTATTTTAAACACTACAATATTTTTGCTTGCTTGATAATATATATAAGCATATTGTTGGTAATGGTAAAGTGCTAGTTTTCAAAGTTAGGGGTTCTAGTCTATTCTCCAAATATAGAAAATGTCTGTCTGCACATGAAGATATAATGTATGATATGATTGCTAGTTTGATGTGAAACAAGTTTGTATGTTTTAGCACtaatttttatatgtaggtttATATAAAAACTTCTTTTACATCTAATTTTGTACCAATTGAAATTCATGCTAAatacagtaatttttttttatcatggtaTACCTTTCTCAGGGATCATTAGTACTTATAACATTTCTAGTTGAAGAAACTCTCAAAGGGGTGTGGGAAGTGTGAAATTTTGTATTGTAGGGCAAAATTTAAGCAAAGAAAATCTTTACATATATTAtcctctagttttttttttt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03031 all species →	NIF	NLI interacting factor-like phosphatase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004274 all species →	Domain	FCP1 homology domain	Interproscan
IPR011948 all species →	Domain	Dullard phosphatase domain, eukaryotic	Interproscan
IPR050365 all species →	Family	Mitochondrial import inner membrane translocase subunit TIM50	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR040078 all species →	Family	CTD small RNA polymerase II polypeptide A phosphatase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12210 all species →	DULLARD PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan
GO:0004721 all species →	Molecular Function	phosphoprotein phosphatase activity	Interproscan
GO:0008420 all species →	Molecular Function	RNA polymerase II CTD heptapeptide repeat phosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15731	CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase	EC:3.1.3.16	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.