Gene detail

Detailed information of PFX22313.1 in Stylophora pistillata

Genomic Location: Spis.scaffold243:64302...70816
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis13145_mrna

GAGCGACTGGGTGGCGTTTCCTTTCACACGTTATATAcctgaaaaacaaatcaaattcagAAATACTCCTCGTGGCCCATCATTCAAGAGACTCTAAGCTTCTGCTCTGATTATCCATCGCCATGTTTTCGTGGATGAAAAAGAACGACGGTCACAGGAACCCTCAAGTTTTCGGCTCAGTCGTGGAAGGCTTGAAGAAACTCTACTTTAAGAATTTGAAACCACTGGAAGAGTCTTAccttttcaatgattttcacTCGCCCGTTATGACTGAGCCTGACTTCGTGGCGAAACCCATGGTATTGTTAGTTGGTCAGTATTCTACTGGTAAAACAACGTTCATTCGTTATCTTCTTGAACGAGATTTTCCTGGAATACGCGTAGGCCCTGAACCTACTACTGATAGTTTCATCGCGGTAATGCACGGAGAGAAAGAGCAAGTAATTCCCGGAAATGCTTTGATGGTGGATCCCCAGAAACCTTTCCGCACTCTCGATTCCTTTGGTAATGCCTTTCTGAATAGGTTTTGTTGCTCCGAGCTTCCAAGTCCTGTCCTTGAGAGCATTTCAATCGTAGATACACCTGGTATTTTGTCAGGCGAAAAGCAGAGTGTGTCTCGCGGATACGATTTCACTGGAATTCTAAAGTGGTTTGCCGAACGATGCGATCGGATAATTCTTCTTTTCGATGCGCACAAACTTGACATTTCAGACGAATTTCAACGTGGGATTGAAGTTCTTCGCGACTACGATGACAAGATTCGAATTGTCCTCAACAAGGCTGATATGGTCACCACTCAACAGCTGATGCGAGTCTATGGAGCTCTTATGTGGTCTTTGGGGAAAGTGATTAACACTCCTGAAGTTGCTCGGGTTTATATCGGGTCTTTCTGGGACCAGCCTTTGCAAATTGATGAAAATCGAAAACTGTTCGAATGTGAAGCCAGTGATCTATTCAGCGATATTCAAACGCTTCCAAGAAATGCCGCACTGAGGAAGTTGAATGACTTCATCAAGAGAGCCCGTTTAGCCAAGGTTCATGCATATGTTATAGCAGAGCTGAAAAACCAAATGCCAGCAGTGTTTGGTAAGGATAAGAAGAAGGAGCAACTTTTGAACAAGCTTTCTGATGTCTACATGAAGATTCAGAAGGAACAAAATATATCCCCTGGAGATTTCCCACCTGtactgaaaatgaaagagcagTTGCGTAAGTATGACTTCTCAAAGTTTGCCCCCTTGAAAACCAAGCTGATAGAATCCCTTGACCGCATGTTGGCAAATGAAATTCCACGCCTGATGGCCATGATACCCTTGGAGAATGAAAGTGAATCTGATCATTCTGTGCAAGGAGGGGCATTTACTGTCAGTCATGCTTCCAACAATCCCTTTGCATCAGGAGCCTGTCAGGGTGCTGCTTTCGGGGCTGGATCAGATGACTGGGTGGTTCAAGAATTTAAACATGAATATGACAAGATCTTCAAAAGTTTGAATCCTCAAGGCGGAAAGATAAGTGGAGCTGTTGCAAAGAAGGAAATGACAAAATCCAAGCTACAAAACAACGTATTGGGTAAAATTTGGACTCTTGCTGACATAGATCGTGATGGGAAACTTGATGAAGATGAGTTTGCTTTGGCAATGTATTTGATAAAGATCAAGTTAGAGGATGATGATCTACCAGAAGAACTTTCTAATCACCTTATTCCTCCATCAAAGCGTCTCCAGTCGTCCATTGGTATGGACTACGACTAATAAGACTCTAATATCAGGGAGGCAGTGTACTGATATTCAAGAAGTGTGTGATAATTTGGACAAAACACGAACATTTACTGATTGggtcaaaataattttaaaaggtGATATAAAAGTTTATGGTCAAAGTCTCCCTGGCTCTCATAACTGTGAGTCTTATGCAGGGTTTGTTCTATGCTGTTAATTATATTCCTCAAGATGAACCTAACATTTAACTCACAGTGGTATTTTAGATTTGGATGGCTTTCTTGCACGTTCTGCTGGAGGTAGTTTGTACAATTATCCTAATAAGGTGGATGATTTTGGTCgagtttttcttcaaagaaaaatagtGTCTGGAGCAGCAGCATTTTAATAGGTGATAAGGTACTGTATGTATTGGGAAAGATAATATGTAGcagaaaaacattcaaaacaGTAGAGTCAACAAACCAAGAAATTGACTGCCTCTGTTGTCACTCAGCTCTTGATGTAATTGGGAATATCACAGAATGAGGTTTATCAGACCAGAGAGGAAATGTGGAAAGGTTTTGGTACTTTCTGTCTAGGAGGTAGATTGATAGATAGAAAGGAAGTACTATAAGTTGTTACTGACAGATAAAGGTTTGATGAAATTTTCACTAACTTACAATAGTTCTGttcagaaaaatttaatttgtagtAATcgatttattcatttgatttgcATGATATTACTGTCCAATTCACTATTGTTTGTCTTATAATTGTTGAAAAACTTGGATATCAAGACACACCAGATTTTGAATGGTGCACCCAGTACCAAAAGTTAACTCAATTAAGTTTGGCTTGCAACTTCTACCTCCAAATGATACAGATCACACCTTCTATCAGCAGCAGCGATTTTAGACTCATTTTTTTGTGAGTAAGGTAGGAAGGTCATACAAATGGACTCAAAATGGTGGCAGAAATCGTATGAGAAAAGCCAAAAAGCAACTCATACAAAATAAACATTACAAGTCAGTGCACCTTGTTATTGGTGAAATGAGTGCCAAAGATTTAGTTTTGTACATGTTAACCCAACCATACTGTCTGTAGTTATCTTCAAATTTACAATTACAATGTCGCTGTcattttttcatcagtttttgttttttcagctcTTAGATATGTCAAGTTAGGCAATTGCTGTGGTGACTACAGAGATCTTCAATTCTTCTGATTGTTAAAGGATTGTTTTATTTCCTACCTTAACTTGTGCGAAGTGACCATAAGGACCAAATAACTAATCTTCAAAATTAGCTgctatgcaaattttcaaatgtgttttttatATTCACGCAAGCAATAATTATTGTACTAGAACATGGATTAATTAGTGTATGGTTGATTTGACAATGTTTAAATCCTACTATGTGCAAAAGTGTTATGTTTAGTACTTCATAATTTTTTGGGATAGAGGGCTTGACCATTCGAGAAAATTAAAGTGTCATAGTTGTATGTTTACCCTTTGAACCAAAGTAGGTGCAATGCTAATATGAACCAGGTTCATTGTATTAACATTATTGTTAGTTTAAGTTCCCTCAGTACCATTACgtaattattttttccagaTAGAGGTACATTACTTATTTTCACCATAGGTTATTTTTGTACATAGTCGAGGTGTAACAACATTGAAATGATACTATTGAAAGGCAATCTGTATTAAGTTAAATATCATTAAAGTATCTTTAATGTTAATATGGTTTTTCG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18150 all species →	DUF5600	Domain of unknown function (DUF5600)	Domain	Interproscan
PF16880 all species →	EHD_N	N-terminal EH-domain containing protein	Family	Interproscan
PF00350 all species →	Dynamin_N	Dynamin family	Domain	Interproscan
PF12763 all species →	EF-hand_4	Cytoskeletal-regulatory complex EF hand	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR040990 all species →	Domain	Domain of unknown function DUF5600	Interproscan
IPR031692 all species →	Domain	EH domain-containing protein, N-terminal	Interproscan
IPR030381 all species →	Domain	Dynamin-type guanine nucleotide-binding (G) domain	Interproscan
IPR000261 all species →	Domain	EH domain	Interproscan
IPR045063 all species →	Domain	Dynamin, N-terminal	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11216 all species →	EH DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0016197 all species →	Biological Process	endosomal transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX22313.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.