Gene detail

Detailed information of PFX22554.1 in Stylophora pistillata

Genomic Location: Spis.scaffold235:300513...322110
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

UBA6

ATGGAGGATAAAACTGAGGTTGAAATTGATGACTCTCTTTACAGTCGTCAGCGATACATGCTTGGTGATGGAGCAATGATCAAAATGGCCCAGTCAAATGTGCTTTTGAGTGGTCTTGGAGGATTAGGGATAGAAATAGCTAAAAGTGTTGTCCTTGCTGGAATTAAGTCTATCACCTTACATGACACCAAGCTAGCCACTTATCATGATCTGGCAAGCCAATTTTTTTTGAGAGAAGAGGATATCAAGGAGAAGAAAAACAGAGCAGAGGCCAGTGCCCCGAGGTTAGCTGAGCTGAACCCCTATGTGAATATTCAGACGTCTACTTCAGCAATTAGTGATGGCGACTTTGCATTCTTAGCTCACTTTCAGTGCGTGATTCTCACAGAGGCTCCACTTAGTCTTCAACTCGGAATAGACAAATTCTGCCGCTCACAGAAGCCACCCATTAAGTTTATTGGTGCTGGTGTGCAGGGGGTGTTTAGCTGGGCATTCTGTGACTTTGGACCTGACTTTGAGGTTGTGGATTCCACAGGAGAAGAACCAAAAGAATTTTTCATTTGGAAAATTACTAAGGCAAATCCTGGTGTGGTGACAACATTAGATAATCGTATGCATGGATTACAAACTGGTGACAAAGTCTCATTCAAGGAAATAGTTGGAATGGCAGTTCTCAACGGCTCAGAACATACAGTCAAAGTGCTGTCTCCATATGCATTCAGCATCTGTGACACTACTGGACCTGAATACGAAGATTATCAGTATGGTGGAATTGGAAGACAAGTCAAAACCTCCTCTACTTTCATGAAATTTGAGTCCCTTGAAACACAGCTTAGTAAGCCAGATATTCTTACTGCAGATCTCAGCAAGATGGAGATTCCGTTACATCTACATCATGGGATACATGCCTTACATTTGTTTCAAGAACAAGAAGGAAGATTTCCCGAAGTTAGGAGTAGCAGGGATGCAGAGAAATTATATGAGATAGCAAAAGTTTTGAACGAGAAAGCAGCTACCAAGGTGGACAATCTTGATGAAAAGCTACTCACACAGTTGGCATACACGTGTCGAGGCTGTTTTTCCCCTTTAACGGCTTCTCTGGGTGGAATTGTAGGCCAAGAAGTGTTGAAAGCTTTGACTGGAAAGTACACTCCTTTAAAGCAGTGGATATATCTTCAAGAAAACGAAATACGTTCCACAGAATGCGAGTGCCCTCGTGGCGGTTCAAAGTGTAGTCACGCTGTAGCTCTGTTCCTTCATGGCTACCACAACTTAAGTAGAACTGACATCGAATGTCAGTGGAAGAAACAAAAGGCATCCGAGGTGGTTAAAACGGTAGAAGATCTGCAAGATCGTTATGATTCTCTTCGAATTTGTACTGGAGAGGAACTGCTGAATAAACTGTCTAATTTGAGACTCTTTATGGTTGGATGTGGTGCTATAGGATGTGAACTGTTGAAGAACTTCGCTCTTTTAGTTTGTCCGGAAACGGAAGAAACGTTGTACACTGATCAGTTCTTTGAATCTCAGGACCTCGTTGTTAATGCATTGGACAATGTGGAGGCCAGGCGGTACATGGATTGTCGATGTGTCAGTACCCAACGAGCTCTTCTTGAGTCGGGAACAATGGGACCCAAAGGTCATGTACAGCGAGATCCTCCAGAGGAGGAAGTTCCCCATTGTACACTCAAGTCATTCCCAGCAGTCATTGAACACACCATACAATGGGCCAGAGATAAGGCCAAACAGTTACTCCATGCATTTCCACTAGACACGAGAGTCAAGGATGGTTCCCTTTTCTGGCAGAGCCCGAAGAGACCGCCAATGCCGCAACAATTCGACACCAGGAATGAATTGCACATGCTTTTTGTAAGAAGCAGCAGTAAACTACACGCAGACACATGCGGAATCAAGTACACCCCAGAGGATTTAAGTGACACTCGTATTGTTGAAGTACTCTGCGATGTCAAAGTTCCAGAATTTAGGCCAAGCTCAAAGGAAATTGAAACAGACGAAACAGCATCGAAGCCAGGCGAGTCTTCTAATGCGTCTTCTAGTGACACGGATAAATTAATAGCAGATATCAGAGAGATAATGGCAAAGGGAATTCAGTCAAGCAACGAATTTGAAAAAGACGATGATTCGAACGGTCACATTGACTTTATCACGTCAGCTTCGAACCTTCGCGCTACCATGTATAGCATAGAAACTGCTGACAGGTTGAAAACCAAGAAGATTGCTGGCAAAATAGTTCCTGCTATAGCTACCACTACTGCTGCCGTAGCTGGCTTGGTCACTATCGAGCTCGTCAAGGTTGTTATGAAGAGTCCCGCCGAAGAATTCAAAAACTGCTTCATGAACCTTGCACTTCCTTATGTCATTTTCTCGCAACCAGGCCCCCCAGAGGTCACGGTCATCAGGGAAGGTTTGTCGTTTTCAAACTGGGACAAGTGGGTGGTCCAAGGGACACAAGAGTTCAAACTTAAAGACTTCGTGAAATATTTCAAGGATAAGTACGGATTCGTTGTGTCCATTGTTGTACACGGCGTAAAGATTGTTTATGTGCCGTTGTTACCGGGACACTCTAAACGACTAGAACAAAAAATGACCAAATTGATAAAGGCACCCAACAAAGCATACGTGGACCTCACGGTTTCGTTTGAGGGTGACGGCGATGATGATCTACCCGGGCCCCCTGTGAGGTACTATTTTGGTCCCTAA

Transcript

rna-Spis12908_mrna

ATGGAGGATAAAACTGAGGTTGAAATTGATGACTCTCTTTACAGtcgTCAGCGATACATGCTTGGTGATGGAGCAATGATCAAAATGGCCCAGTCAAATGTGCTTTTGAGTGGTCTTGGAGGATTAGGGATAGAAATAGctaaaagTGTTGTCCTTGCTGGAATTAAGTCTATCACCTTACATGACACCAAGCTAGCCACTTATCATGATCTGgcaagccaattttttttgagaGAAGAGGATATCAAGGAGAAGAAAAACAGagCAGAGGCCAGTGCCCCGAGGTTAGCTGAGCTGAACCCCTATGTGAATATTCAGACGTCTACTTCAGCAATTAGTGATGGCGACTTTGCATTCTTAGCTCACTTTCAGtGCGTGATTCTCACAGAGGCTCCACTTAGTCTTCAACTCGGAATAGACAAATTCTGCCGCTCACAGAAGCCACCCATTAAGtttattGGTGCTGGTGTGCAGGGGGTGTTTAGCTGGGCATTCTGTGACTTTGGACCTGACTTTGAGGTTGTGGATTCCACAGGAGAAGAaccaaaagaatttttcatttggaaaattacTAAGGCAAATCCTGGTGTGGTGACAACATTAGATAATCGTATGCATGGATTACAAACTGGTGACAAAGTCTCATTCAAGGAAATAGTTGGAATGGCAGTTCTCAACGGCTCAGAACATACAGTCAAAGtgctgTCTCCATATGCATTCAGCATCTGTGACACTACTGGACCTGAATACGAAGATTATCAGTATGGTGGAATTGGAAGACAAGTCAAAACCTCCTCTACTTTCatgaaatttgAGTCCCTTGAAACACAGCTTAGTAAGCCAGATATTCTTACTGCAGATCTCAGCAAGATGGAGaTTCCGTTACATCTACATCATGGGATACATGCCTTACATTTGTTTCAAGAACAAGAAGGAAGATTTCCCGAAGTTAGGAGTAGCAGGGATGCAGAGAAATTATATGAGATAGCAAAAGTTTTGAACGAGAAAGCAGCTACCAAGGTGGACAATCTTGATGAAAAGCTACTCACACAGTTGGCATACACGTGTCGAGGCTGTTTTTCCCCTTTAACGGCTTCTCTGGGTGGAATTGTAGGCCAAGAAGTGTTGAAAGCTTTGACTGGAAAGTACACTCCTTTAAAGCAGTGGATATATCTTCAAGAAAACGAAATACGTTCCACAGAATGCGAGTGCCCTCGTGGCGGTTCAAAGTGTAGTCACGCTGTAGCTCTGTTCCTTCATGGCTACCACAACTTAAGTAGAACTGACATCGAATGTCAGTGGAAGAAACAAAAGGCATCCGAGGTGGTTAAAACGGTAGAAGATCTGCAAGATCGTTATGATTCTCTTCGAATTTGTACTGGAGAGGAACTGCTGAATAAACTGTCTAATTTGAGACTCTTTATGgTTGGATGTGGTGCTATAGGATGTGAACTGTTGAAGAACTTCGCTCTTTTAGTTTGTCCGGAAACGGAAGAAACGTTGTACACTGATCAGTTCTTTGAATCTCAGGACCTCGTTGTTAATGCATTGGACAATGTGGAGGCCAGGCGGTACATGGATTGTCGATGTGTCAGTACCCAACGAGCTCTTCTTGAGTCGGGAACAATGGGACCCAAAGGTCATGTACAGCGAGATCCTCCAGAGGAGGAAGTTCCCCATTGTACACTCAAGTCATTCCCAGCAGTCATTGAACACACCATACAATGGGCCAGAGATAAGGCCAAACAGTTACTCCATGCATTTCCACTAGACACGAGAGTCAAGGATGGTTCCCTTTTCTGGCAGAGCCCGAAGAGACCGCCAATGCCGCAACAATTCGACACCAGGAATGAATTGCACATGCTTTTTGTAAGAAGCAGCAGTAAACTACACGCAGACACATGCGGAATCAAGTACACCCCAGAGGATTTAAGTGACACTCGTATTGTTGAAGTACTCTGCGATGTCAAAGTTCCAGAATTTAGGCCAAGCTCAAAGGAAATTGAAACAGACGAAACAGCATCGAAGCCAGGCGAGTCTTCTAATGCGTCTTCTAGTGACACGGATAAATTAATAGCAGATATCAGAGAGATAATGGCAAAGGGAATTCAGTCAAGCAACGaatttgaaaaagacGATGATTCGAACGGTCACATTGACTTTATCACGTCAGCTTCGAACCTTCGCGCTACCATGTATAGCATAGAAACTGCTGACAGGTTGAAAACCAAGAAGATTGCTGGCAAAATAGTTCCTGCTATAGCTACCACTACTGCTGCCGTAGCTGGCTTGGTCACTATCGAGCTCGTCAAGGTTGTTATGAAGAGTCCCGCCGAAGAATTCAAAAACTGCTTCATGAACCTTGCACTTCCTTATGTCATTTTCTCGCAACCAGGCCCCCCAGAGGTCACGGTCATCAGggaaggTTTGTCGTTTTCAAACTGGGACAAGTGGGTGGTCCAAGGGACACAAGAGTTCAAACTTAAAGACTTCGTGAAATATTTCAAGgaTAAGTACGGATTCGTTGTGTCCATTGTTGTACACGGCGTAAAGATTGTTTATGTGCCGTTGTTACCGGGACACTCTAAACGACTAGAACAAAAAATGACCAAATTGATAAAGGCACCCAACAAAGCATACGTGGACCTCACGGTTTCGTTTGAGGGTGACGGCGATGATGATCTACCCGGGCCCCCTGTGAGGTACTATTTTGGTCCCTAA

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E1\|ThiF\|ThiF · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16191 all species →	E1_4HB	Ubiquitin-activating enzyme E1 four-helix bundle	Domain	Interproscan
PF10585 all species →	UBA_E1_SCCH	Ubiquitin-activating enzyme, SCCH domain	Domain	Interproscan
PF16190 all species →	E1_FCCH	Ubiquitin-activating enzyme E1 FCCH domain	Domain	Interproscan
PF00899 all species →	ThiF	ThiF family	Domain	Interproscan
PF09358 all species →	E1_UFD	Ubiquitin fold domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032420 all species →	Domain	Ubiquitin-activating enzyme E1, four-helix bundle	Interproscan
IPR007527 all species →	Domain	Zinc finger, SWIM-type	Interproscan
IPR019572 all species →	Domain	Ubiquitin-activating enzyme, SCCH domain	Interproscan
IPR000011 all species →	Family	Ubiquitin/SUMO-activating enzyme E1-like	Interproscan
IPR042302 all species →	Homologous_superfamily	Ubiquitin-activating enzyme E1, FCCH domain superfamily	Interproscan
IPR032418 all species →	Domain	Ubiquitin-activating enzyme E1, FCCH domain	Interproscan
IPR035985 all species →	Homologous_superfamily	Ubiquitin-activating enzyme	Interproscan
IPR038252 all species →	Homologous_superfamily	Ubiquitin-activating enzyme E1, C-terminal domain superfamily	Interproscan
IPR018965 all species →	Domain	Ubiquitin-activating enzyme E1, C-terminal	Interproscan
IPR000594 all species →	Domain	THIF-type NAD/FAD binding fold	Interproscan
IPR042063 all species →	Homologous_superfamily	Ubiquitin-activating enzyme E1, SCCH domain	Interproscan
IPR045886 all species →	Family	ThiF/MoeB/HesA family	Interproscan
IPR042449 all species →	Homologous_superfamily	Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10953 all species →	UBIQUITIN-ACTIVATING ENZYME E1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0008641 all species →	Molecular Function	ubiquitin-like modifier activating enzyme activity	Interproscan
GO:0036211 all species →	Biological Process	protein modification process	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016925 all species →	Biological Process	protein sumoylation	Interproscan
GO:0019948 all species →	Molecular Function	SUMO activating enzyme activity	Interproscan
GO:0031510 all species →	Cellular Component	SUMO activating enzyme complex	Interproscan
GO:0032446 all species →	Biological Process	protein modification by small protein conjugation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10699	UBE1L2, UBA6; ubiquitin-activating enzyme E1-like protein 2	EC:6.2.1.45	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.