Gene detail

Detailed information of PFX22605.1 in Stylophora pistillata

Genomic Location: Spis.scaffold234:111370...123396
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

nol11

ATGGCGGATCTTCGAGAACCTTTCGAGTTGTGTAAAGTCCTTCAAAACGGCCCGCTTGTTGGAATATCAAGACTAACTGGTAGTGAAAATGTTCTCCTTACGTTTAATGATAGAAGAGTTCTTGTTTACAACCTGGAACATCAGAAACTTATCAACAGCTGGTCCGTGGAACAACAGGATGAAGTGACTAGTGCTGCTGTCTATAATCCCGTCGATAAAACCTTCTTGATGGCCTTAAACAAGACGGAGATTTTCATGTGGAAAGAAACTGATTCAGATTTTAGTTCATGTCAAAGAATCCAATCTGAGAAGAATGTGTGTTGTCTCCATGTGTGGAACTATCTTGAAGTTGATACACTTGTCATGTTTGAGGATGGGTCCTCAATGTTTTTGGCTTATCTTCTTCATAATAGTGAAGAGAGAAAAGCAAAAAGGAGGAAAGCCTCGAAGTGTACCAATGATCTTCTTTGGACTTGTGTTTTCCATCACCAGGAGCAACTATCTTCTGTGTCTCTAAGAAAAGATGAAAAGAATGAGTACATTTTGAATGTTACAAATCATACAATACCAGCTCATCTGAATCCAAAGAACGAGACAATGGAGTTCAAAGTAGCACCTCCTGAAAAGGATGCCGAGCCATTGTGTTGGTGTTTATATGAGGGAGGATACCATTTAGTATCTTACTGGTCCACTGGGGCTCTTTGTCTCACAGAGCTAGAAACAGTACTTGAGCAGAAACAAGGTGATGAAATGCTGACTCTCTCCTGCAAAACAATTCAGAGATTACAACCCCTGCACAGTGAAAGTAATAAGAAGTGCGTGGCTATGTCAGCCATAGACCTGGATCGTGTATGTCTCTGTGGAAGCAGCATGATTGATGGAAAATTGAAAGACGTGGTTATGATATGGAACATAAAGTATGGTACTTTGCAGTCGTGGCAGACTTTGGACAAAATCGTCGAAAAACAGAGTTCATTGCTCAGTTACTCGCGGAGTAGAGGAGCTTGTAGTGTATGTTGTATTCCAGGCTTCATTTGTATTGGCTTTCATCATCTTGTAGCTGTATGTCAGGTCTCAATTGAAGCAAGCTCGTTAGCATCTGCTCTGGGACAACTAGATTCGACAGCAAAGTTCCTGAGGACCGACAAAGTTAAACCAGAGCTGCTTGTGACGCCTAAGTTAGCGAGACCAGGCGAGGCTCTCAAGCACTGGCAAGAGACAATTGCGAGAGATGATGAAGTGGAAAAAGAAGCTCTACAAAACTTAACAGATCCATCAAAGACTCCCACGCTTGAGGCGTTCTCTACGGAACTTCGGAAATACATGGAATTAAAGCTTTCTGGAAAAGATGAAGAACCTGAAAATTCTAATCAATCACTGGATTCTAGCAAAGCCGTGCCTGTGTTTGGAGGAAAGTTTGGTAAAAGGACAGAAGTATTATCACAACATTTTATATCCAGCGTGTTGTCAAGGTGCGCTGAAGAGAAAAGCTTTTGGGCGAGGGACTCTATATCTGAACTCCTCAAAACAAAGTGTGTTCCATCCAGTTGCATTAAAGATCTGGTGAATGCTATTCTGGAGAAGAATGACTTGGAGTTACTGGAGGAATCGTTTGAGAACATAAGTGGAATTTCTGAAGACACCGTCGTTCTCTGTGCACGCCATATTTTAAGACTGGATCATGGAAAACTTGACAAAACATCACAAGAAAATCTGACAGAGGAATCAGAGGGAGAAGTCGTTGATCGGATGCCATTAGACAAAACACAGGCCAAATACTTAGACCAGTATCTACTTAGCATGATAACAAAGAAATTTGCACATATGGTCCTTGACTGGGCAGGATTGCTGTTAAATGCCCATTACACTCAAATGGTGCTCATGCCTGAAGCCCAGGAGGTACTGGTCAGCTGTCATCAACTTGTAGCGCAACAGGTGCGTACTTACGATAAGCTCCGTACTGTGGAATGTTTCTTGGATCATTTTCGAAAGAGACGAAAGGCTCTACCCAAAGCAGAGAAAGTGACACCCTACAGCATCGAAACGCTGGAATTATGA

Transcript

rna-Spis12853_mrna

ATGGCGGATCTTCGAGAACCTTTCGAGTTGTGTAAAGTCCTTCAAAACGGCCCGCTTGTTGGAATATCAAGACTAACTGGTAGTGAAAATGTTCTCCTTACGTTTAATGATAGAAGAGTTCTTGTTTACAACCTGGAACATCAGAAACTTATCAACAGCTGGTCCGTGGAACAACAGGATGAAGTGACTAGTGCTGCTGTCTATAATCCCGTCGATAAAACCTTCTTGATGGCCTTAAACAAGACGGAGATTTTCATGTGGAAAGAAACTGATTCAGATTTTAGTTCATGTCAAAGAATCCAAtctGAGAAGAATGTGTGTTGTCTCCATGTGTGGAACTATCTTGAAGTTGATACACTTGTCATGTTTGAGGATGGGTCCTCAATGTTTTTGGCTTATCTTCTTCATAATAGTGAAGagagaaaagcaaaaaggagGAAAGCCTCGAAGTGTACCAATGATCTTCTTTGGACTTGTGTTTTCCATCACCAGGAGCAACTATCTTCTGTGTCTCTAAGAAAAgatGAAAAGAATGAGTACATTTTGAATGTTACAAATCATACAATACCAGCTCATCTGAATCCAAAGAACGAGACAATGGAGTTCAAAGTAGCACCTCCTGAAAAGGATGCCGAGCCATTGTGTTGGTGTTTATATGAGGGAGGATACCATTTAGTATCTTACTgGTCCACTGGGGCTCTTTGTCTCACAGAGCTAGAAACAGTACTTGAGCAGAAACAAGGTGATGAAATGCTGACTCTCTCCTGCAAAACAATTCAGAGATTACAACCCCTGCACAGTGAAAGTAATAAGAAGTGCGTGGCTATGTCAGCCATAGACCTGGATCGTGTATGTCTCTGTGGAAGCAGCATGATTGATGGAAAATTGAAAGACGTGGTTATGATATGGAACATAAAGTATGGTACTTTGCAGTCGTGGCAGACTTTGGACAAAATCGTCGAAAAACAGAGTTCATTGCTCAGTTACTCGCGGAGTAGAGGAGCTTGTAGTGTATGTTGTATTCCAGGCTTCATTTGTATTGGCTTTCATCATCTTGTAGCTGTATGTCAGGTCTCAATTGAAGCAAGCTCGTTAGCATCTGCTCTGGGACAACTAGATTCGACAGCAAAGTTCCTGAGGACCGACAAAGTTAAACCAGAGCTGCTTGTGACGCCTAAGTTAGCGAGACCAGGCGAGGCTCTCAAGCACTGGCAAGAGACAATTGCGAGAGATGATGAAGTGGAAAAAGAAGCTCTACAAAACTTAACAGATCCATCAAAGACTCCCACGCTTGAGGCGTTCTCTACGGAACTTCGGAAATACATGGAATTAAAGCTTTCTGGAAAAGATGAAGAACCTGAAAATTCTAATCAATCACTGGATTCTAGCAAAGCCGTGCCTGTGTTTGGAGGAAAGTTTGGTAAAAGGACAGAAGTATTATCACAACATTTTATATCCAGCGTGTTGTCAAGGTGCGCTGAAGAGAAAAGCTTTTGGGCGAGGGACTCTATATCTGAACTCCTCAAAACAAAGTGTGTTCCATCCAGTTGCATTAAAGATCTGGTGAATGCTATTCTGGAGAAGAATGACTTGGAGTTACTGGAGGAATCGTTTGAGAACATAAGTGGAATTTCTGAAGACACCGTCGTTCTCTGTGCACGCCATATTTTAAGACTGGATCATggaaaacttgacaaaacatCACAAGAAAATCTGACAGAGGAATCAGAGGGAGAAGTCGTTGATCGGATGCCATTAGACAAAACACAGGCCAAATACTTagaccagtatctacttagcatgataacaaagaaatttgcacatatgGTCCTTGACTGGGCAGGATTGCTGTTAAATGCCCATTACACTCAAATGGTGCTCATGCCTGAAGCCCAGGAGGTACTGGTCAGCTGTCATCAACTTGTAGCGCAACAGgtgCGTACTTACGATAAGCTCCGTACTGTGGAATGTTTCTTGGATCATTTTCGAAAGAGACGAAAGGCTCTACCCAAAGCAGAGAAAGTGACACCCTACAGCATCGAAACGCTGGAATTATGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08168 all species →	NUC205	Nucleolar protein 11 N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012584 all species →	Domain	Nucleolar protein 11, N-terminal domain	Interproscan
IPR042859 all species →	Family	Nucleolar protein 11	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15633 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0030490 all species →	Biological Process	maturation of SSU-rRNA	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX22605.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.