Gene detail

Detailed information of PFX22613.1 in Stylophora pistillata

Genomic Location: Spis.scaffold234:378201...384019
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03876 all species →	SHS2_Rpb7-N	SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397	Domain	Interproscan
PF08292 all species →	RNA_pol_Rbc25	RNA polymerase III subunit Rpc25	Domain	Interproscan
PF00410 all species →	Ribosomal_S8	Ribosomal protein S8	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR036898 all species →	Homologous_superfamily	RNA polymerase Rpb7-like, N-terminal domain superfamily	Interproscan
IPR035987 all species →	Homologous_superfamily	Small ribosomal subunit protein uS8 superfamily	Interproscan
IPR000630 all species →	Family	Small ribosomal subunit protein uS8	Interproscan
IPR004519 all species →	Family	DNA-directed RNA polymerase, subunit E/RPC8	Interproscan
IPR005576 all species →	Domain	RNA polymerase Rpb7-like , N-terminal	Interproscan
IPR013238 all species →	Domain	RNA polymerase III, subunit Rpc25	Interproscan
IPR047863 all species →	Conserved_site	Small ribosomal subunit protein uS8, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11758 all species →	40S RIBOSOMAL PROTEIN S15A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX22613.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.