Gene detail

Detailed information of PFX22713.1 in Stylophora pistillata

Genomic Location: Spis.scaffold231:282042...294299
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis12746_mrna

atggcgaacAAAGTGGAGGGAAAAACAAATGTACAATTTGTATGTctttttgcccaagaacacgtGGATTTTAGAATATCGGAGTTGTTATCAGTCTCTGGTATGTTTGGTTTTGAAGTAGTTGTGGACAGAAAGGACTACAGAAAAGAAAATCCTTACCTTGAGATTTGTCTGCCAAACAAAGACTGTGCAAAGAACCTGCTATCAAGAACAGTTTCCATTAAGTCTGTTTATGAATTGTGGGGACAAGGAGAAAATTTAACAGCATTAAAAGATAACATTCTCCAATATCCACCTGATAAAATGAACACTTTCACATCCAGTGACAAATCCTTTAAAATTAGCATTGAGTCCTTtaataaaaagttgtctatAAGTCAACAGAGGGAGTTTATTGATTATTTAAGCCAATTGAGCAAAAGCACACCTTGTTATCCACAGCAATTCCAATTCCTTCCTTTTCAAGGCTGTGTCAATCTGACAGCACCTGATAATCTGTTTGCACTGCTGTTGGACTATGGAGATGACCCCAATGAAGCCCCTCCAATTCCTCAGAGGTTGTTCTTTGGTCGCTTGGTTGGGCATGGTCAGCGTCACCTTTTCAAACAGTATTCACTCAAGACGAGGCGTTTTATTGGTAACACTTCCATGGATCCACAGCTGTCATTCCTGATGGCCAATCAGGGACAGGTCCGTTCAGGCAGCCTCGTCTTTGATCCCTTCGTTGGAACAGGTAGTGTTCTTGTGGCCTGCgcccattttggtgcccatgtGATAGGAAGTGACATAGATTATACACTGCTTCACGGGAGAGGTAGAAGTTCACGAGCCAACAGGAAAGGCCAGTGGAGAGGTCGTGATGAGAATTTTCGGGCAAACTTCGCGCAGTATGGACTCGACAGTTATTTCGTTGACATACTCATAGCTGATGCTGGGAGACTGGGACTGCGAGAAATTCCTTTGTTTGATGCAATCATAACAGACCCACCTTATGGAATCCGAGAAGGCGCTCGTAAGTTAGACACAAATATGGAAAGTCAGGAGGAAAATGATAGTGCTGATCAGACGTCACCGTGTTCAGCGGTGCGTGGCTGTCGCCTGTCAGAAATTCTCACGGCATTACTGGATCTGGGAGCTCGATATCTTGTTCTTCACGGCCGGCTCGTCTATTGGCTTCCAATTTATCGGCCAAGTTACTCAGACGAGTTTCTGCCCAGTCACCCTTGCCTCAGACTTGTAGCGAACAGTGAGCAGTGTTTATCAAGACACGTGTCTCGGCGACTGATCACCATGGAAAAGATCAAAGAGCACACGGTGGGAGGTCAAAACATGTCCGTGGTACATCAAAAGTTCTTGGAATCGTGTGATAACTTTAGGGATAACTACTTTAGCCAGCAAAGCACGTAACCATTGAAATGGTGTATCATGACATCGAGGCACACCATGTGCTCTTAACGCGATGCACCGTAACGTAATCGTGTGTGGCTGAATAATGGCGGTATTAGCGATGGTGTTTGAAAGTGATGAACGGAAGCGGCTAGATGCATTTTTGTCTTCAAGGGACTCTACAATGCTCATGGTTTCGAAAGTATCGAAAGTCGACTTCAAGAGGTTCGATTCTTACATGTTGCAATATTCTTTGCAATCTGTTATCTGTTGAAAATCTCAGAGGTTAGAAAAAATAACTTTAGATCTGTTACATCAAGTTTCATTTTACATCAGGAGCTGTTTATGGTCACGTGTTCTAGCGAAATGAAGCACATACATGCTGTGCTACTGACATCGTCTCAGttgacagaaagaaaaacaaacaaacagaagaaaaaaacacgcTATAAAAAGTGCGAAATATCCCATTAGTAACATTagagcaaaaaacaaacaaacaatcaaaaacaCTCTTTTGAGAAGGTCGCGTCCTTGTATCTGTCAATCTTTTAAAATACGTGTTTTGGATCACGTCATGAAAAAGCTCTTGCTTTCTATCTTACAACCCTCTTGTTTATGATTTGTAGAATCATAAGAGCCCGCGGTACAGGCTCTGTGAACTGCATGTTTAACAACAAACACGCCAAGATTCTGCGACTGATTTGCACGCTATTCGGAC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01170 all species →	UPF0020	Putative RNA methylase family UPF0020	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016691 all species →	Family	tRNA guanosine-2'-O-methyltransferase, TRM11	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR000241 all species →	Domain	Ribosomal RNA large subunit methyltransferase K/L-like, methyltransferase domain	Interproscan
IPR002052 all species →	Conserved_site	DNA methylase, N-6 adenine-specific, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13370 all species →	RNA METHYLASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0160102 all species →	Molecular Function	tRNA (guanine(10)-N2)-methyltransferase activity	Interproscan
GO:0004809 all species →	Molecular Function	obsolete tRNA (guanine-N2-)-methyltransferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0032259 all species →	Biological Process	methylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15430	TRM11, TRMT11; tRNA (guanine10-N2)-methyltransferase	EC:2.1.1.214	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.