Gene detail

Detailed information of PFX22756.1 in Stylophora pistillata

Genomic Location: Spis.scaffold230:347381...359235
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis12725_mrna

caagatggcggaagagGTGCAGAGGGAACGTATCACTTGTGCCTTctttttgaaacgaaaaaatCGTTTTTGCCGAATGACAGTTTCAGGTGGAAGCAAATATTGCGGAGAGCATAGGATTTTTGATGAAGAATCTAAAGGTGTTGGACGAAAAAGGATCACTTGTCCTCTGGATGGGAAACATACCGTGTTTGAAGACCAGCTTAAGAATCACCTCAAGAAATgcaatcaaacaaagaaaactcaagTGGTCTACTACAGTTCTAATATCAACTCTGGTATACCAGACTATGAATTCTCTGCAGCAGAAAAGGTTTCATTAAGTTCTGTTTGTCAAGAGAAAGTTTCAAGGTTAATCAGCAAAGTTAAAGAATGTTATAAAGCTCATGTTCCTCAAATCCCTGAGGAAGTCCTATTTCATAATGTATTTCAAGAAGAAGTTACAGAAATGGTGGACAATCCGGCtgttttgaaacatttgaaaCAACAGGCATCTCTTATTGGTCATATGGACAAGCTACATCTCTTAGAACCCAGGACAATATTCTTGGAATTTGGAGCTGGTAGAGGAAAGTTGTCTCATTGGCTTCAGCTGGCTGTGGGGAGTGCTGCAAAGGATGTGGACTATCTCCTTATTGACAGAGCAAGTAATAGATATAAGtATGACCGTTATCATCGAGGAGAGGACCAGGGACCGTCTTTCCAGCGATTAAACCTGGACATTAGACACCTTGATTTAAGCAAGGTGCCATGTATTCAATATAGTAAGCGGAGAGTTGTTGCTGTCAGCAAACACCTTTGTGGGGCTGCTACTGACTTGACCATCCGTTGCTTGGTAGAAACGTTAGATAACACTCAGAAGCAATCAGTTGATGACATCTGTTTAGAAAATGGTGCGGATAAGACACGTAGTAGGGAAGACAAGAGGATAAAGCTAGACCCCAATGAACGGCCAGTGAAGGGAGTGATATTGGCCCTGTGTTGTCACCATTGCTGTTCCTGGCCTCAGTATGTTGGTAGACCGTTTCTTCAGAATCTTGGCTTTACTGCAGAAGATTTTCATCTGCTGTGTTGCCTTAGTAGCTGGGCAACCTGTGGCATGAGGCTTAGGGAACGCCGAAGGGGAATTGCTGGGCGGACTGATGAAAGAACAGAGAATGACGACCGAGGGGGAGATGACTGCCATGAAATTTCAACAGAAAACATTGCTTCACaagaatttctttcaaaaaacgATGAAGACAGCAAGGAAATTAAAGAGGCCTGTGAGGAAGACAGatGGTCAAATTACACGATACCTGAGAGAGAAGAAATAGGTCTGCAGTGTAAACGACTCCTAGATACTGGGCGTCTGTGGTATCTGGAGTCGCGTGAATTCAATGCTAGACTGGCGTTCTACGTCGATTCCAGCGTCTCGTTGGAAAATGCGGTTCTTGTAGCGACACCAAACACATAGGATTCGCCGTTAAGacaaataatataataatgaaaTACTTTCCAAATCGTGACGTAGAAGGACTACACTTCCTTTGAAGAATTGCCTTTATGAAGAGAATCACCTGAGCATGGTGGTCGTttgggttgtttttttttttcctgtctgcTCAACTGTTCGTCTGACCGACATGCTGTgcgtccgtccgtccgtccgttTTTACCCATCTGCGTTCATCTTTTGTCTGCAGTCTCACTTTTTGTGCCTACTGAGCCTTCATCCTTACTCGAATCTGATCGGGTTTCTTTAaattcatatttgtttttcttgactTCGTTAGGGCCTCAACTCTGCATTTTGTCATCGATTTCAATGTAAGAGCTACTTCGGGAAACGTTCGCACATGTGCGTTAACTCTGAACTCTAACATATCTCTAAAAAAGAAAGGGCTCCAACCTTAAACTCAGCTTTCGCACTAGAGTAGGTCTATCAAGAGCGCCAGGTACGCAGAGCGTACGAAGTGGCGGAGTTTTGTATTGAAACGAATTTTATGCACATTGCTGAATCAAAGACCTCTTCTATAAATTTCCTGCCCTGTCCTCGGCCTGTCAGTTGACCAGTATATAAACTCTGCTCTAACCAAGTCCTCCTTTTGTCACAAGTTTGGCATCGACAACTGCTGTTTATTAAACTAACTACAGTAGGCACATGCAGTCATAGACTGccttttatttgtaatctacTGTCTGATCGaaatttggccttttttttcGGGTATTTCGCCTCTCCATCCTTTATCAGTGCGTCCCCCACGTTCTTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11722 all species →	zf-TRM13_CCCH	CCCH zinc finger in TRM13 protein	Domain	Interproscan
PF05253 all species →	zf-U11-48K	U11-48K-like CHHC zinc finger	Domain	Interproscan
PF05206 all species →	TRM13	Methyltransferase TRM13	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021721 all species →	Domain	Zinc finger, CCCH-type, TRM13	Interproscan
IPR022776 all species →	Domain	TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domain	Interproscan
IPR039044 all species →	Family	tRNA:m(4)X modification enzyme Trm13	Interproscan
IPR007871 all species →	Domain	Methyltransferase TRM13	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12998 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0008175 all species →	Molecular Function	tRNA methyltransferase activity	Interproscan
GO:0030488 all species →	Biological Process	tRNA methylation	Interproscan
GO:0106050 all species →	Molecular Function	tRNA 2'-O-methyltransferase activity	Interproscan
GO:0008033 all species →	Biological Process	tRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15446	TRM13, CCDC76; tRNA:m4X modification enzyme	EC:2.1.1.225	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.