Gene detail

Detailed information of PFX23134.1 in Stylophora pistillata

Genomic Location: Spis.scaffold217:257388...267473
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis12339_mrna

CATGGCGACCTTCACGGATTTATTATAGTTTCAAATTGGGCCTAATCTCACGTTCTTATatctatttaatttaaaaaaaaaacgcacagTTGGATAgtatatttcttaaaaatggTTCTCGCGGATTTAGGACGGAAAATCACCACAGCACTCCGCTCCTTGAGTAATGCAACCATCATCAATGAAGAGGTCCTTGGTGCTATGCTTAAAGAGATCTGCGCTGCTTTACTTGAAGCAGATGTCAATATCAAACTTGTAAAGAAACTCAGAGAAAATGTCAGATCTGCCATTGATTTTGACGACATGGCTGGTGGTTTAAATAAAAGAAGGATGATTCAACATGCTGTGTTCCAGGAACTGTGCAAGCTTGTTGACCCTGGTGTTAAACAGTGGAATCCAAGCAAGGGAAAGCAAAATGTAATCATGTTTGTTGGTCTGCAAGGGAGTGGAAAGACCACAACATGCAGCAAGCTAGCATACTATTATCAGCGCAAGGGATGGAAGACTTGCTTAATCTGTGCAGACACATTTCGTGCAGGTGCTTTTGACCAACTCAAACAGAATGCTACTAAAGCAAGAATACCATTTTATGGGAGttacacCGAAATGGACCCTGTTGTAATAGCTCAAGAAGGTGTCGACAAATTCAAACAAGAAAACTTTGAGATAATCATTGTAGACACAAGtgGAAGACACAAACAAGAAGAATCACTTTTTGAGGAAATGCTTCAAGTTTCTAATGCTGTTGACCCAGACAATGTAATATTTGTAATGGACGCCACAATTGGACAGGCTTGCGAGGCACAGGCAAAGGCATTCAAAGAGAAAGTTGATGTTGCTTCAGTTATTGTAACCAAATTAGACGGTCACGCTAAAGGTGGTGGGGCATTGAGTGCAGTGGCTGCCACCAAGAGTCCTATAATCTTCATTGGTACAGGAGAACACATTGATGATTTTGAACCTTTCAAGACCAGACCATTTATTAGTAAACTGTTGGGAATGGGAGACATCGAAGGACTGATTGATAAAGTCAATGAACTGAAACTAGAGGACAATGAAGAACTTATTGACAAACTCAAACATGgCGTTTTTAGTTTGCGAGATATGTATGAACAGTTCCAGAACATCATGAAGATGGGGCCATTTGGCCAAATCATGggTATGATACCCGGGTTCAGTACTGACTTCTTATCTAAAGGAAATGAACAGGAGTCAATGGCGAGATTAAAGAAGCTAATGACAATTATGGACAGCATGAATGATGAAGAACTAGATAGTCCCAATGGTGCAAAGCTGTTTTCCCGCCAACCGGGACGTTCCACGCGGGTAGCACGTGGAAGCGGCGTGTCTGTCCGAGAGGTGCAAGAGCTTTTGTCACAATACACCAAATTTGCTGCAATGGTGAAGAAAATGGGAGGAATAAAGGGCTTATTTAAAGGAGGTGACATGAGCAAGAATGTGAATCCGTCGCAGATGGCCAAACTCAATCAACAGATGGCTAAGATGATGGATCCCAGGGTACTTCAACAAATGGGGGGAACTCAAGGCCTCCAGTCCATGATGCGTCAGTTTCAACAAGGCGCGGCCTCCCATGCAAGTGGATCAAGAAAATAGCCAATAGTCAACCAGCCCAAATGAgacaacaattatttttaaaagttatgttGCGTTTCAAATAACATATTATACGTCACACTAGCTAGTCGTTTTAACCAACCACAGCAACCTAGAGCTTTGTATTAATGaatttaaccttttcactcccgAGATCGAAAATCAAATTCTCAGCACTGTTTGCGATACAGTTCACACAATTTTCGCTAAGAGAATTCGGTGTCAAATCAAGCAACAACCCTAGActgatatttgttttttcttctcatcatCCTTCTGATGAAAATGTATCGatacttgaaaagaaatttctctttggtGACTAAAGTAGTGAAAGGATTAAACTGTTATCGCTCTGATCAGCCGTTGtaataactttgtttttgttttgcgacACTCAATTGAATTGCCCTCTATATGAACAAGGAAATACGAATTTGTCACTTATTTCTGTGAAAAACTACATTCTACTTCATTCAAGTTTTAACACTGGGACACTTGAAGTCTCTGTAGTTGAATAAGTTCTCTCCTCCAGAATTGTCCATGTTCTCAGGCATAAGGTGCCGATTAGATTGAGTTACATTTATTTACAATGTACAGATGGATTATGAGAATTAAAATAAAGTACTGGGAGACAGTTATGTTAACCTTCG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00448 all species →	SRP54	SRP54-type protein, GTPase domain	Domain	Interproscan
PF02881 all species →	SRP54_N	SRP54-type protein, helical bundle domain	Domain	Interproscan
PF02978 all species →	SRP_SPB	Signal peptide binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000897 all species →	Domain	Signal recognition particle, SRP54 subunit, GTPase domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR022941 all species →	Family	Signal recognition particle, SRP54 subunit	Interproscan
IPR013822 all species →	Domain	Signal recognition particle SRP54, helical bundle	Interproscan
IPR042101 all species →	Homologous_superfamily	Signal recognition particle SRP54, N-terminal domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036891 all species →	Homologous_superfamily	Signal recognition particle, SRP54 subunit, M-domain superfamily	Interproscan
IPR006325 all species →	Family	Signal recognition particle, SRP54 subunit, eukaryotic	Interproscan
IPR004125 all species →	Domain	Signal recognition particle, SRP54 subunit, M-domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11564 all species →	SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0006614 all species →	Biological Process	SRP-dependent cotranslational protein targeting to membrane	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005786 all species →	Cellular Component	signal recognition particle, endoplasmic reticulum targeting	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006616 all species →	Biological Process	SRP-dependent cotranslational protein targeting to membrane, translocation	Interproscan
GO:0008312 all species →	Molecular Function	7S RNA binding	Interproscan
GO:0030942 all species →	Molecular Function	endoplasmic reticulum signal peptide binding	Interproscan
GO:0048500 all species →	Cellular Component	signal recognition particle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03106	SRP54, ffh; signal recognition particle subunit SRP54	EC:3.6.5.4	Secretion system	ko02044	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.