Gene detail

Detailed information of PFX23139.1 in Stylophora pistillata

Genomic Location: Spis.scaffold217:213152...223344
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

AWC38_SpisGene12336

ATGAGTGTTTTCTTCTCTGACTACAGAATTACGAAAGATCGCCTCGGAGTATCAAACCCGACATCACGTGATAAGCTCTTAACAGCCGTCCACGAACTCAAGCTTTTCGGGGGCTCCATTCCAGATGAGAGAATGTTTCGCAGTCCACGGCCTAAAAGGAGGTCCCTTCCAGCCCGGCCCGCGGGCATGCATGAAATTTTACTGAAAGAAGCGTTGTCCGATTCGGTAGAGAAAGGGGTTTCTCAGCGGAGGGAACTGGTGGAGAGGAAAACACCGCAGAGAGTTCTTCAAGAACAGACAGAGGAGATGTTGTCTGAGCCAGAAAAGGGAACCGTGCAAGTGCGCACACCTGGACTTAACCCTGACACAGAAATTACAAGCATCGAAATCACCAATCAGACCACAAGTAAGGAGCTTGTCCGTTTGCTGCTTGAGAAGTATAACGAGCTTTCAAAGGATCATAACCTGTTTTATATAGCAGTGGAGATTGAGATTCAGAAGAAAGATTCCAGTCTCCCGATGTCCCAGATGATGGTATTGGCCGACGATGCCCGTCCTTTGCAAATTCAGTCCCGTCAACCAACAGGGGAGGCCAAATTTCATTTGAAGATGAAAAGCGGCGGACTTCTAAGAGTTCAAGCTGGAATTCTGAGCCCAGGGGCAACCTACAAATGCGTGCAGATATCTCGAAAAACTAGAGCCGACGAGGTCGTAAAGATGATTTTGTCCAGTTATGGTAGCGATGCACCGCCTGAGAAGTTTGTCCTGGTGGAAAGATTGTCAGATTCAGAAGCTGGTCGTATCCTAGAGGCAGACGAGTATCCGTTAGAAGTACAGTCTCGATGGGAGACTGGTGACCAAGGAACGTTCACTTTAACTCAAGCCGAGTTTGAGGGTATCCTTCTTAGTGACGAAAAGAACCCACCAAATCAACAAGGTTCTTGTAGTGACAACGAAATGAACACCACAAGTGCTAGCGACCAAAAAACGACCTCGTCCTCTTCAGAAACAGAAGACAAGGAAAATAAGGAGGAAGTAAGCAAGCGCCGAACTTCGATCGATGCGCTAGATTTGCAAACTGTCAATCAAATCAAGCGTAAAGTTTCTCAGATAGACAATTTGAGACATAAATTCCAGGAATACCATGAATTCCACGGAAGCCACAGAAGGACCAGTCAGTCGAGTTCGAATGAAGTATTAGTTCAAGAGCCCAAGAAACGCAAAGTTTCGCAGATCGATCTCTTCAGGAGCAAATTTTTGGCGTATTATGGCGGTAAAATGGAAGGACCTGGCGCTTTGGATCCGTTGAGTGAGATCGTGAAGGCCAGCGAAACCGCTGGTAAAAATGGACAGAACAAGAAGTCGCCTCCATCACGATCACCTTCGGCTGAACATTCTGATGGTGAAGAACTACCGCGTTTCTCATCTTCGCCTCCTCCTTACCTCCGTGATAACAACAACAATAATAGACACAAAAGCAACAGCAGTAAAAACAACTATGTCTCACGTAAAGACTTAAATATTGTAAACATTAGGAAGGATTCTCCTACCGAGACATCACATCTACCACGTCTCAGTTTAGCAAGTGTTCTTCAGCGTTGTAAACTCATTACTGTGATTCTTAACAGAGAAGCGGAGGAGTCCTGGGGCATAGAGCTCGTTCACGTTACAAAAACAGGCTCTTCGGTGAGCCCGAATGACATCAATGAGAAAGATTGTGACGAGGAGAAAGTAGTTTATGTTCAACATAATGGACCCGGACAGAATTCCATTATAAACACGTCTTGCGCAGGCAATGTTAGTAATCAGTTGTCTGAGCCGACCTCGCCCCTCTCCGAGAGCTCCTCAGGCTCGAGTGAGCAGGAAATAACAACCATTCTAGGAACAAATGATCGATCAAGAACTGTGACGGAGAAGTTGAATGGAGACATGCGCCATATTGTTCACAAACAGAACCTTCACAGAAGAATAGGAACCATAATTAAACCCAATATTTTCCAAAGTCCTAACTTAAGTCCCACCTCATCGAGGCCTGATTCAGCATCTACATTGCGACCTACCAATCCCCTTCCACCAAGACCTTCTTCTGCACTTGCGCAATGGAAGAAAGAGGGCAGTCCTCAACCTCGTCCCGGTGTACGCATTGTGGCACTGACGGAGGGAGGGGTAGCGGAGAGAAGCAAAGAATTGGCTGTGGATGACTTAATTGTTGAGATAAATGGCCATTTTGTGCTCAATTCTCCACTAGAACCTGTCATCGCTGCGATGAAAGAAGCTGATTCAGTGTCTCTTGTTGTGGCAAGATCCAAGCTCTCTGAAGTAAAACCAGAAGAAGAAGACAACAAAACTGATTACAAAGACGACATCAAAGCCTTGACGCTACAAATAAAGAATCTTGTTACTAAAGTCGGCGAAATGCAGAGCGATTTGAAAAAGAAAGACGACAAAATAAAAACCCTGAAGAAAATGGTCAAGAAAAATAGCGGGGATGGAAAAGGGAAAATTTACGAGTCTGTTCAAGTACTTGTTTAA

Transcript

rna-Spis12336_mrna

AAAAGATCTGCGGGCCAAGGTCGCTTGTTTCTAATTATCTTCTCACGGATAAAACATGAGTGTTTTCTTCTCTGACTACAGAATTACGAAAGATCGCCTCGGAGTATCAAACCCGACATCACGTGATAAGCTCTTAACAGCCGTCCACGAACTCAAGCTTTTCGGGGGCTCCATTCCAGATGAGAGAATGTTTCGCAGTCCACGGCCTAAAAGGAGGTCCCTTCCAGCCCGGCCCGCGGGCATGCATGAAATTTTACTGAAAGAAGCGTTGTCCGATTCGGTAGAGAAAGGGGTTTCTCAGCGGAGGGAACTGGTGGAGAGGAAAACACCGCAGAGAGTTCTTCAAGAACAGACAGAGGAGATGTTGTCTGAGCCAGAAAAGGGAACCGTGCAAGTGCGCACACCTGGACTTAACCCTGACACAGAAATTACAAGCATCGAAATCACCAATCAGACCACAAGTAAGGAGCTTGTCCGTTTGCTGCTTGAGAAGTATAACGAGCTTTCAAAGGATCATAACCTGTTTTATATAGCAGTGGAGATTGAGATTCAGAAGAAAGATTCCAGTCTCCCGATGTCCCAGATGATGGTATTGGCCGACGATGCCCGTCCTTTGCAAATTCAGTCCCGTCAACCAACAGGGGAGGCCAAatTTCATTTGAAGATGAAAAGCGGCGGACTTCTAAGAGTTCAAGCTGGAATTCTGAGCCCagggGCAACCTACAAATGCGTGCAGATATCTCGAAAAACTAGAGCCGACGAGGTCGTAAAGATGATTTTGTCCAGTTATGGTAGCGATGCACCGCCTGAGAAGTTTGTCCTGGTGGAAAGATTGTCAGATTCAGAAGCTGGTCGTATCCTAGAGGCAGACGAGTATCCGTTAGAAGTACAGTCTCGATGGGAGACTGGTGACCAAGGAACGTTCACTTTAACTCAAGCCGAGTTTGAGGGTATCCTTCTTAGTGACGAAAAGAACCCACCAAATCAACAAGGTTCTTGTAGTGACAACGAAATGAACACCACAAGTGCTAGCGACCAAAAAACGACCTCGTCCTCTTCAGAAACAGAAGACAAGGAAAATAAGGAGGAAGTAAGCAAGCGCCGAACTTCGATCGATGCGCTAGATTTgcaaactgtcaatcaaatcaAGCGTAAAGTTTCTCAGATAGACAATTTGAGACATAAATTCCAGGAATACCATGAATTCCACGGAAGCCACAGAAGGACCAGTCAGTCGAGTTCGAATGAAGTATTAGTTCAAGAGCCCAAGAAACGCAAAGTTTCGCAGATCGATCTCTTCAGGAGCAAATTTTTGGCGTATTATGGCGGTAAAATGGAAGGACCTGGCGCTTTGGATCCGTTGAGTGAGATCGTGAAGGCCAGCGAAACCGCTGGTAAAAATGGACAGAACAAGAAGTCGCCTCCATCACGATCACCTTCGGCTGAACATTCTGATGGTGAAGAACTACCGCGTTTCTCATCTTCGCCTCCTCCTTACCTCCgtgataacaacaacaataatagaCACAAAAGCAACAGCAGTAAAAACAACTATGTCTCACGTAAAGACTTAAATATTGTAAACATTAGGAAGGATTCTCCTACCGAGACATCACATCTACCACGTCTCAGTTTAGCAAGTGTTCTTCAGCGTTGTAAACTCATTACTGTGATTCTTAACAGAGAAGCGGAGGAGTCCTGGGGCATAGAGCTCGTTCACGTTACAAAAACAGGCTCTTCGGTGAGCCCGAATGACATCAATGAGAAAGATTGTGACGAGGAGAAAGTAGTTTATGTTCAACATAATGGACCCGGACAGAATTCCATTATAAACACGTCTTGCGCAGGCAATGTTAGTAATCAGTTGTCTGAGCCGACCTCGCCCCTCTCCGAGAGCTCCTCAGGCTCGAGTGAGCAGGAAATAACAACCATTCTAGGAACAAATGATCGATCAAGAACTGTGACGGAGAAGTTGAATGGAGACATGCGCCATATTGTTCACAAACAGAACCTTCACAGAAGAATAGGAACCATAATTAAACCCAATATTTTCCAAAGTCCTAACTTAAGTCCCACCTCATCGAGGCCTGATTCAGCATCTACATTGCGACCTACCAATCCCCTTCCACCAAGACCTTCTTCTGCACTTGCGCAATGGAAGAAAGAGGGCAGTCCTCAACCTCGTCCCGGTGTACGCATTGTGGCACTGACGGAGGGAGGGGTAGCGGAGAGAAGCAAAGAATTGGCTGTGGATGACTTAATTGTTGAGATAAATGGCCATTTTGTGCTCAATTCTCCACTAGAACCTGTCATCGCTGCGATGAAAGAAGCTGATTCAGTGTCTCTTGTTGTGGCAAGATCCAAGCTCTCTGAAGTAAAACCAGAAGAAGAAGACAACAAAACTGATTACAAAGACGACATCAAAGCCTTGACGCTACAAATAAAGAATCTTGTTACTAAAGTCGGCGAAATGCAGAGcgatttgaaaaagaaagacgaCAAAATAAAAACCCTGAAGAAAATGGTCAAGAAAAATAGCGGGGatggaaaagggaaaatttacGAGTCTGTTCAAGTACTTGTTTAACAATCTGTGAAAAGCATCCTAAAGCGCGTGTAAAGGATGCTTTGGATGGGCGCGGTAGGCGAGGGGTACACCAACGCCTCACAAGCATTATTTGGCAAACCAGTCTGTTTTACAGGACTGACAAGTTGTCATTCTTGTCACCCCTGCAAGAGAAAGAGAGGGTCATAGGCGCCACTCcactcccctcccctctcttgCCCGGGTGTGTGTCGACCAGGTTTTAACTGATATAATTCACATTCAACATGAGGAAAGAATTGGCAGATAGCTTGGCATCTTcccaaacaaacagaaatatttAATACTTTGACATACTCTAATTAGGTATCATCGATACATCAGAAAACACTAAGAGCATGACCTTGACCTTTGAATAAAGGCTCACTTCATTCAACGcagtaaaaaatatatcaaatatttATGTCCACATCACACAAAAATTCAACCTCgcgaaaaattaattttaaggaCAGTAAACTAGATATTACTTACTGTCGCAAAGAGAGCAAAAATTTATTCCTTAGAGAACGTAATGAAATAAAAGCGAcgtaaaattacattttaaacttactCAGacgaaaataataaattacattggCAATAAAGAGTATACGTTCAAGCAACATCAAAGtaagaataaatttgaaaaccgtGACAGTTGGTC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF00788 all species →	RA	Ras association (RalGDS/AF-6) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR000159 all species →	Domain	Ras-associating domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21298 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0045742 all species →	Biological Process	positive regulation of epidermal growth factor receptor signaling pathway	Interproscan
GO:0045743 all species →	Biological Process	positive regulation of fibroblast growth factor receptor signaling pathway	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02374	PTPN13, FAP-1; tyrosine-protein phosphatase non-receptor type 13	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.