Gene detail

Detailed information of PFX23237.1 in Stylophora pistillata

Genomic Location: Spis.scaffold214:270355...298021
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

DNMT3A

ATGGCGTCCACCCCCAGCAACTCAGACTTAGTCAAACCAGCTGCAACAACTAAAAAGATACGAGCCAAGAGAAAGCTGAACTTTTCAGCCTCAGATTACAGAAGCAAGAAAAAGTTCCGCCTGAAAAGTGACATCATAATACCTGCCAACCCTCCTCAACTTAAAAAAGATTGTACTTCAACTTCAAGCGATAAGGAGACACCTAATCTTAAGGAGGTAGAACCAATCAAATATCTCATTGGCCAGTTGACCTGGGGCAGATTGAAAGGATTTGACTGGTGGCCTGGGCGTGTCATTTCTCATATTGAAGCACAAAAGTCTCCGGCTGTGGAGGGTTCTTATTGGATCAAGTGGTTTGGAGATAGCAAACTATCAATGCTTCCTGTTGTATGTTTACGGCCACTTTCCGAGTTCAAAGAAAGTTTTCACCTTTCAAGGATGAGAGGTCTCTATAAGAAAGCCATCATTGACAGCTTAGAGGTAGCAGCAAAAAGATGTGGTAAAGTGTTTTCTAAGAGCAACAAACAACAGTCAAAGAAAGGGAAGAGAGGAGGAAAGAAAACTGAACCAAATGCTGTGATGGAGAAAGAGGATGAACAACTTAGTGATAAAGAGAAAATAGAAATAATGGTGCAGTGGGCAATAAATGGATTTGAACCAAGTGGTCCAGATGGATTTGCACCAAGTGAAGAGGATATGGTGGATATTCCAGCACCAGTTCCTCAAATGGATCTAACATCAGAGGAAATGACTGCTGATCAAAAGGCACGCTTTGGTAAACCAATCAATGAACCAAACCTGGCAGAAGATATCAAAGTTCTGTTTGATGCAGTAGTTGATGGAAAAAAGAAAATTACAGGTATCTGTCTGGCATGTGGTGATGATAAAGTTGGCACTGAACATCCATTATTTGAGGGAGGTCTGTGTAAAGAATGTAAGACCTCTTTCCTGGAAAATTTATACCTCTATGATGAAGATGGTTCTCAGATGTATTGCACGATCTGTGGAGATGGAAAGGAAGTATTTATGTGTGATAGCACTGGCTGCTTCAGGTCATACTGCAGTCTCTGCATAGGCATGTTATGTGGAAGAAATGCAGTCAGAGAGATTGCCGCAGCTGACAATTGGGTCTGTTACATGTGTTCAGGAAACTCTCAAGGACTCATCAGACCGCGACACAATTGGTCTGCTAAACTGCAAGAGTTCTTTATGAACGACAAAGAACAAGATTTTAAACAACCATACATTTTCCCTGCAGTTCCCCCTGACGAGCGCAGACCAATTCGAGTCCTGTCGCTGTTTGATGGAATAGCCTCTGGTTTCCAAGCCTTGAAGGAACTCGGTGTTGAAATCGAAGTGTACTACGCATCTGAAATCGACGAACATGCCATGCAGGTGGCCAAGGTACAACATGGAGCAAAGATTATCCATGTTGGTGACATTACGCAAATCTCTAGAGATAAGGTTGAAGAACTTGGACCATTTGACTTTGTGTTTGGAGGAAGTCCGTGTAATGATCTATCCATTGCAAACCCAGTGAGACGAGGAATTTGTGAGGGAACTGGCCGTCTTTTCTTCGACTTTTTTCGCCTCCTTCAGTTCGTGCGGCCTAATTCAGATATGGAGCGACCTTTCTTTTGGCTTTTTGAAAATGTCGTTGGCATGAGAGCGGATGACAAGAAGATTATTTCAAGATTTCTAGAGTGTAATCCCGTAGTAGTGGACGCCAAAGAGATCTCTCCTGCTCACAGAGCTCGTTATTTCTGGGGAAATCTGCCCGGAATGAACAGGCCAACAGTTCCTTTACCCGGTGACAAGCTTTGCTTGCAAGATTGTCTTGAAGCAAACTGTGGAAGGCAAGCCAAGTTCACTAAAGTACAAACTCTGACTACCAACGCTAACTCTATGCTTCAAACCAAGAAAGGTCTGTTTCCGGTTCAGTATACGGGATCGGATGGACAGCTGAAGGAAGATGTGCTTTGGATCACGGAGATGGAGAGGTTGTTTGGTTTACCATCGCATTACACAGACGTCAGTAACATGGGGCGCTCACAGAGACAGCGGCTGCTAGGGAAGTCTTGGAGTGTTCCTGTAATAAGGCATCTTCTATCCCCTCTAAAGGATTACTTTAAATGTGAAGCATAA

Transcript

rna-Spis12233_mrna

ATGGCGTCCACCCCCAGCAACTCAGACTTAGTCAAACCAGCTGCAACAACTAAAAAGATACGAGCCAAGAGAAAGCTGAACTTTTCAGCCTCAGATTACAGAAGCAAGAAAAAGTTCCGCCTGAAAAGTGACATCATAATACCTGCCAACCCTCCTCAACTTAAAAAAGATTGTACTTCAACTTCAAGCGATAAGGAGACACCTAATCTTAAGGAGGTAGAACCAATCAAATATCTCATTGGCCAGTTGACCTGGGGCAGATTGAAAGGATTTGACTGGTGGCCTGGGCGTGTCATTTCTCATATTGAAGCACAAAAGTCTCCGGCTGTGGAGGGTTCTTATTGGATCAAGTGGTTTGGAGATAGCAAACTATCAATGCTTCCTGTTGTATGTTTACGGCCACTTTCCGAGTTCAAAGAAAGTTTTCACCTTTCAAGGATGAGAGGTCTCTATAAGAAAGCCATCATTGACAGCTTAGAGGTAGCAGCAAAAAGATGTGGTAAAGTGTTTTCTAAGAGCAACAAACAACAGTCAAAGAAAGGGAAGAGAGGAGGAAAGAAAACTGAACCAAATGCTGTGATGGAGAAAGAGGATGAACAACTTAGTGataaagagaaaatagaaataatggTGCAGTGGGCAATAAATGGATTTGAACCAAGTGGTCCAGATGGATTTGCACCAAGTGAAGAGGATATGGTGGATATTCCAGCACCAGTTCCTCAAATGGATCTAACATCAGAGGAAATGACTGCTGATCAAAAGGCACGCTTTGGTAAACCAATCAATGAACCAAACCTGGCAGAAGATATCAAAGttctGTTTGATGCAGTAGttgatggaaaaaagaaaattacagGTATCTGTCTGGCATGTGGTGATGATAAAGTTGGCACTGAACATCCATTATTTGAGGGAGGTCTGTGTAAAGAATGTAAGACCTCTTTCCTGGAAAATTTATACCTCTATGATGAAGATGGTTCTCAGATGTATTGCACGATCTGTGGAGATGGAAAGGAAGTATTTATGTGTGATAGCACTGGCTGCTTCAGGTCATACTGCAGTCTCTGCATAGGCATGTTATGTGGAAGAAATGCAGTCAGAGAGATTGCCGCAGCTGACAATTGGGTCTGTTACATGTGTTCAGGAAACTCTCAAGGACTCATCAGACCGCGACACAATTGGTCTGCTAAACTGCAAGAGTTCTTTATGAACGACAAAGAACAAGATTTTAAACAACCATACATTTTCCCTGCAGTTCCCCCTGACGAGCGCAGACCAATTCGAGTCCTGTCGCTGTTTGATGGAATAGCCTCTGGTTTCCAAGCCTTGAAGGAACTCGGTGTTGAAATCGAAGTGTACTACGCATCTGAAATCGACGAACATGCCATGCAGGTGGCCAAGGTACAACATGGAGCAAAGATTATCCATGTTGGTGACATTACGCAAATCTCTAGAGATAAGGTTGAAGAACTTGGACCATTTGACTTTGTGTTTGGAGGAAGTCCGTGTAATGATCTATCCATTGCAAACCCAGTGAGACGAGGAATTTGTGAGGGAACTGGCCGTCTTTTCTTCGACTTTTTTCGCCTCCTTCAGTTCGTGCGGCCTAATTCAGATATGGAGCGACCTTTCTTTTGGCTTTTTGAAAATGTCGTTGGCATGAGAGCGGATGACAAGAAGATTATTTCAAGATTTCTAGAGTGTAATCCCGTAGTAGTGGACGCCAAAGAGATCTCTCCTGCTCACAGAGCTCGTTATTTCTGGGGAAATCTGCCCGGAATGAACAGGCCAACAGTTCCTTTACCCGGTGACAAGCTTTGCTTGCAAGATTGTCTTGAAGCAAACTGTGGAAGGCAAGCCAAGTTCACTAAAGTACAAACTCTGACTACCAACGCTAACTCTATGCTTCAAACCAAGAAAGGTCTGTTTCCGGTTCAGTATACGGGATCGGATGGACAGCTGAAGGAAGATGTGCTTTGGATCACGGAGATGGAGAGGTTGTTTGGTTTACCATCGCATTACACAGACGTCAGTAACATGGGGCGCTCACAGAGACAGCGGCTGCTAGGGAAGTCTTGGAGTGTTCCTGTAATAAGGCATCTTCTATCCCCTCTAAAGGATTACTTTAAATGTGAAGCATAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21255 all species →	ADDz_Dnmt3b	DNMT3, ADD PHD zinc finger	Domain	Interproscan
PF17980 all species →	ADD_DNMT3	Cysteine rich ADD domain in DNMT3	Domain	Interproscan
PF00855 all species →	PWWP	PWWP domain	Domain	Interproscan
PF00145 all species →	DNA_methylase	C-5 cytosine-specific DNA methylase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000313 all species →	Domain	PWWP domain	Interproscan
IPR018117 all species →	Active_site	DNA methylase, C-5 cytosine-specific, active site	Interproscan
IPR001525 all species →	Family	C-5 cytosine methyltransferase	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR049554 all species →	Domain	DNMT3, ADD domain, PHD zinc finger	Interproscan
IPR040552 all species →	Domain	DNMT3, cysteine rich ADD domain, GATA1-like zinc finger	Interproscan
IPR025766 all species →	Domain	ADD domain	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23068 all species →	DNA CYTOSINE-5- -METHYLTRANSFERASE 3-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17398	DNMT3A; DNA (cytosine-5)-methyltransferase 3A	EC:2.1.1.37	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.