Gene detail

Detailed information of PFX23243.1 in Stylophora pistillata

Genomic Location: Spis.scaffold214:323126...337345
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis12235_mrna

ATGGCGGCCTGCCAAAGTTTCAAGACTCAGTCTCTTGAAGATATTTTTGAACAAGGGTTTGTTTTACATTGTAAAATAGTAGATGACGATGAACCAAGCTCCTCGGAGATATTTCAGAAGAAGGTCAGTACTGCTGTGGATCACTTTGTTCGTGCCACAGAAATAGTCAACAGTTTGGCTTTGTTCAGCTCAAATGAAGAGTTGTCTGAGGTTCCAACTTCTGAGTTGAGATATCTATTATTGCCAGCTTTTCTTGGAGACCTGTTCCTTAGAAAGAGTGAAACTGATAGAATGACATTACTCAACATTGCAAAGGTTTACTTTATTGATTATCTGAAAAGATGTAAAAATTATGGAGTGACAGACATGGACCTCTCCAGATATTTTGAAGAATCAGATGAACCACAAGTGGGACAAAAAAGTATTCATCAAATGGCAAACAGTCGTCAAGAAAAAATAGCAAGATATAAAGAACAAAAGGAGCAAGAAAAAAGGATAAAGGAACTGAGGAATATCCTTGGTGAGTCATCTCCACCTATAGCTGATGAAGATACTCAGagAAGTTATTATGTTCTGCTCTTAAAGTTTTGGATTAACAAAGTTGTGGACCATTTAGCAAGTCTTCAAAGTGAAATGGAGATCTTGAAACACATGCAGACACTAAAAGGCAGAGAAGATGATAGACCTGCAACCACGAAGcctCAACAGAGCTTTAAACCAATTCTGATAACAAGGGAAATGATTAAGAACAAAGTATTTGGGGCAGGATACCCAAGTGTTCCCACCATGACACAGGAGGAATTTctagaaaaagaaattcttgaaGGAAAAGTTGTTCTAAATTACAAAGAGGACCAAATGAAGGATAAGGGCAAAACAAGTGATGAGGATTCTGACAGTGAAAATGACCCTGTTAAACTTCAGAAGAAAAGAGACTGGGATGAGTGGAAAGATGACCACCGCCGTGGATGGGGTAACAGGGAGAATATGGGATGAGGTGATGGTGATGGAGGAAAGCAGAGGATTTGCTTTAACTGACCATACTGATGCCTACTCCTCAGTATGGTTTCCTTGAGCAAGTAGTGAGGTGTAGCACCTGCTTAAAAGTAAGATCTATTGGACAAAGCAAATGAAACCTTCTCAACAGGAAGGTGGACTGCATTTAACTGAATCAGCCCAAGATAGAGAAGTAAGCACCAAGTTGTGTGATTATCCACAAGGAAAGCCATGCACACTTTAATTCAAAAGATGAACAGCAACAACCAAGGACTCAAGGAAAATTGTTGCTATGTTGTTGAAACTAAAAGATGCAGCCTTTAATTTATTATCAGTagccaaatttttcaaataaggAAATCCACTCAAGCTACTGATGTGATCTTGACCAAATGAACAACATAATCTACAGACACATCAGCCTCTTTTGAAATGGATTTTAGAAGTTCCAGCAACATAAAATGATTCATTCTCAAAATGAACATTCCTTTGCAAAGCTATTTTACTCTTCATAAATACTACTTCTCTTCAAATACAACCAATCTACctcagtttaatttttcaattgtcaTACGGCAAAACCAATCTACTGCATGTTTGTTctgttacaaattaaaagtgATGTGAAATGTGGCAACACCAAAACCCTAGCACACAAGCCTTAGGTGAGTGGGTCAGGCATGTTCACTTCCTATGATGTATAAGGTGGGCCCACCTAGAGGTACATGCTGCAGAGACATAGTGCTGCTACATGTTATTGGGACCTTCTTGTAATTATGCTGCCTGAGTGTTACTAAGACAAGAATCAggaacagaacagaaaaaattGTAGTAGGGACATGTCTGTGTTAAATGTATTAGGGGAATTAGTCCAGCTTTGTCGCTGCTGTGTGTGGCTCTAAACTAACCTTGCAACATGTTCCCTACAGAAAAATAACTTGGAAAGTATCACAATTGTGGTATAGGCAGTGCTCAGATGATCAAGAtttgtaacaaaatattttttgatttgctgagctcagtttttgtctttgttaattCACTCAGACAATCAGAGTGACATTTTTGGAGTTACCTCCAGAGGTATGCAGACAATGTAGCTTGAATGGGTGTTGGTTATGCATCCCTTCCCAAGCCTTAAAAGTATGTGTTCCCCTAAAGGTTAGGGTATTACAGCTGTAGACAACTCAGGAGAGAAAATGTGTATAGAGTTTGACCATTATGTTGTTTTGAAAATCCCACATGGTTTTCTATAGTATTATTGAAATATTGTATTACTCCCTTTAACTCAAACAAGAGGCAAAGAAGTTGCAAAATATCTGTTGTAGTGTAAAAGGAATTTCAAATAAAC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04177 all species →	TAP42	TAP42-like family	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007304 all species →	Family	TAP46-like protein	Interproscan
IPR038511 all species →	Homologous_superfamily	TAP42/TAP46-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10933 all species →	IMMUNOGLOBULIN-BINDING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009966 all species →	Biological Process	regulation of signal transduction	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0035303 all species →	Biological Process	regulation of dephosphorylation	Interproscan
GO:0051721 all species →	Molecular Function	protein phosphatase 2A binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17606	IGBP1, TAP42; immunoglobulin-binding protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.