Genomic Location: Spis.scaffold210:180476...277600
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families
| CDS |
| Vps13c |
| Transcript |
| rna-Spis12103_mrna |
| Protein |
| PFX23346.1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12624 all species → | Chorein_N | VPS13-like, N-terminal | Domain | Interproscan |
| PF16908 all species → | VPS13_ext_chorein | Vacuolar sorting-associated protein 13, extended-chorein | Repeat | Interproscan |
| PF06650 all species → | VPS13_VAB | Vacuolar-sorting associated protein 13, adaptor binding domain | Domain | Interproscan |
| PF09333 all species → | ATG2-VPS13_C | ATG2/VPS13, C terminal domain | Domain | Interproscan |
| PF13499 all species → | EF-hand_7 | EF-hand domain pair | Domain | Interproscan |
| PF16909 all species → | VPS13_DH-like | Vacuolar-sorting-associated 13 protein, DH-like domain | Family | Interproscan |
| PF16910 all species → | VPS13_mid_rpt | VPS13, central RBG modules | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002999 all species → | Domain | Tudor domain | Interproscan |
| IPR018247 all species → | Binding_site | EF-Hand 1, calcium-binding site | Interproscan |
| IPR026854 all species → | Domain | Vacuolar protein sorting-associated protein 13-like, N-terminal domain | Interproscan |
| IPR002048 all species → | Domain | EF-hand domain | Interproscan |
| IPR031646 all species → | Domain | Vacuolar protein sorting-associated protein 13, extended chorein | Interproscan |
| IPR009543 all species → | Domain | Vacuolar protein sorting-associated protein 13, VPS13 adaptor binding domain | Interproscan |
| IPR015412 all species → | Domain | Atg2/VPS13, C-terminal | Interproscan |
| IPR031645 all species → | Domain | Vacuolar protein sorting-associated protein 13, DH-like domain | Interproscan |
| IPR026847 all species → | Family | Vacuolar protein sorting-associated protein 13 | Interproscan |
| IPR011992 all species → | Homologous_superfamily | EF-hand domain pair | Interproscan |
| IPR031642 all species → | Domain | VPS13, middle RBG modules | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR16166 all species → | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
| GO:0006623 all species → | Biological Process | protein targeting to vacuole | Interproscan |
| GO:0019898 all species → | Cellular Component | extrinsic component of membrane | Interproscan |
| GO:0045053 all species → | Biological Process | protein retention in Golgi apparatus | Interproscan |
PFX23346.1.
