Gene detail

Detailed information of PFX23672.1 in Stylophora pistillata

Genomic Location: Spis.scaffold200:382302...391146
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06068 all species →	TIP49	TIP49 P-loop domain	Domain	Interproscan
PF17856 all species →	TIP49_C	TIP49 AAA-lid domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042487 all species →	Homologous_superfamily	RuvBL1/2, DNA/RNA binding domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR027238 all species →	Family	RuvB-like	Interproscan
IPR010339 all species →	Domain	TIP49, P-loop domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041048 all species →	Domain	RuvB-like, AAA-lid domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11093 all species →	RUVB-RELATED REPTIN AND PONTIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0000492 all species →	Biological Process	box C/D snoRNP assembly	Interproscan
GO:0000812 all species →	Cellular Component	Swr1 complex	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008094 all species →	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0016573 all species →	Biological Process	obsolete histone acetylation	Interproscan
GO:0031011 all species →	Cellular Component	Ino80 complex	Interproscan
GO:0035267 all species →	Cellular Component	NuA4 histone acetyltransferase complex	Interproscan
GO:0097255 all species →	Cellular Component	R2TP complex	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11338	RUVBL2, RVB2, INO80J; RuvB-like protein 2	EC:5.6.2.3	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.