Gene detail

Detailed information of PFX23711.1 in Stylophora pistillata

Genomic Location: Spis.scaffold199:395364...407372
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis11740_mrna

ATGGCGGCCAACATAGGGGATTCAACAGGACCAGCTGCCCCTCCAGAGCCCGATTCCAGTGAAAATGCTCCTCTGTTGCAAGGACAAGAcgatcaaaatgaaaatatgggACCTCCACCTCCATTTGTTGCTAATGCTCCCCCCATCATTCCTGGAATGCCTCCGCCGGCTTATTCAGAAATGCCACCACCATATACCCCACCAATGTCAATGAACACTGAGCCATCTGTGATCTGCAGAGTTTGTCAACAGCTCATATACATAAAAGGACGGGAACACCAGCGGGTTGTGAAGTGTGCCCACTGTCAAGAGGCTACGcCCATTAAAGCACCTCCAGCTGGCAAGAAATACATTCGTTGTCCATGTAATGCTCTGCTGACATGCAAGGTCTCCTCTGTTAGGATATCTTGTCCAAGAGTCAACTGCAAGCGCATAATCAACCTTGCGGCACCTCCAATGCTGCCGCCAGCAGCGACACTACCAGCCATTACTAGAAGTCAGTTTAGAGTGACTTGTGGACATTGCAATGAGATCTTTGTGTTCCACACAACAAGCCACCTGGCTAGATGTCCTCATTGCAGAAGAATATCTTCAGTGGGACCACATTTTGCCAGAACTCGGGCCACCATATTTGCAGTCATTGGATTCATCTTCTTAGCAGCAGGTATTGGAGTTACCGTGGGAACCCTGGACCTTGCAAGAGATTCTGGAGGTATCTATGTGGTTTGGATTGGTGCATTTGTTGCTGGTATCCTTAACTTGATCAGAAGTTGCTATTACTGCACCATGACTGTCAGTTCAATTGAAGGAGAATCATAAATGGGTAGTCTTCAATAAGACATCCATAGAAAGAACAGCGAGGAATGTCCTTGCATgcaactttttcctttgttaaaaaccaACTTGGATGCTATACACAAATTCAGCAATAACATGCTATAGTGCTCAAAATGGTCCCTTGGTGGTGAACAAGATCTTAATGTTAGATTGTCTTTTTGTCTAATTGTCTTAAACACGTACCAGCATGTTGAGGTCTTTTGCCTTCCTTACATACCTACTTTCTCACCTACTTAATGTTCAAGTGAATCAGTGACTGCTATTTTGAGCACTGCACGGTGTCAGAgcagagattttttttctagatgGAACTTCAggtttcataattttttcatgatcatttaTTTCCATTCTATCACGTTTTGAATGTGTTAGATAGGGCAGAAGGTGTGAGCCACGTTGGCTGAAGGCTTGTCATATTCAGCAAAGAACTTGACGTTGTTAACTGCAACTAGAGGTCTCTGGTTGAcaataattatcaataaaatgtGTGTGCTTGGCATACTAGTTATTAATAACCATTATAATTACTTTACATTATATATTAGAAACAGAGATATGTTAGAAAAAGGATAGCTAGCCCAAAACTAACCTTGTGAACTGCAAATAGCCATTGAACAAGTTATGCAGTTGACCCTAATAATCCAATATGCACCAAATTAAATTGCCAGTAGCATGAATGAATAGCAGTTTGTAGGTGTGTCTCAGAAACTTTTTTATCCCGGTTATTTCATTAATCAAGTGGTTTTGATCTTTAGCGGGACCTTTGGTACACCTTTAGTTGCTCGAaagattttgcaaatttttaagAATAGAGAAGTCTAATGAGAAAACCAAATTTGTAAGCatagtttgaagaaaaatattgcagatTAGTATTTTTAGTAGTCATGATCATAACTTTAGCACCCATCTAGAAGGAATCTAAGTATGTTACTTGACTATTTTGTGGAGTTTGTCACAGAGTTGAGTGGACTTTTCAGCGAAGTTCTTTGGCGATGGAAGGTGTGCTTCTGTTAAACAGCATTAGTCTTTGAAATGTTTAGGACTTCTTGGAGCTTTTCTCTTTTGCTTGTAACAAATTAACAGTCGATGGTTGACAACTGAGTCGCTTGTGTTGCGTTATGCTTTTTGAGAAATTTAGAGCTACACTATTTTAAGTGAATAACGTGATTGTAATTTTCATCAACTATGTGTATaaaatgtaacaataaaatCAACTTGATTCGTCA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09788 all species →	Tmemb_55A	Transmembrane protein 55A	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019178 all species →	Family	Phosphatidylinositol 4,5-bisphosphate 4-phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21014 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0034597 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity	Interproscan
GO:0046856 all species →	Biological Process	phosphatidylinositol dephosphorylation	Interproscan
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0030670 all species →	Cellular Component	phagocytic vesicle membrane	Interproscan
GO:0031902 all species →	Cellular Component	late endosome membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13084	TMEM55; phosphatidylinositol-4,5-bisphosphate 4-phosphatase	EC:3.1.3.78	Phosphatidylinositol signaling system	ko04070	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.