Gene detail

Detailed information of PFX23853.1 in Stylophora pistillata

Genomic Location: Spis.scaffold194:132925...157432
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Usp48

ATGGCGCGTCGAACAACAAATCGGAAACAACAAGGAAATGTTCTAAAGCAAGCATGGGGCTGGGCTGATTACACTGAACCAGAAAATGTCATCAAAGATAACGTTGAGAGTGCCTATAGAATAAATACTGCTGCTTGCTCTCAGGGAAATTGCAGGAGGAACTGCAAAGCAAATCCAAACTGTTTCAATTGCCTTGGGGAAAGATTTTGGCTCAGCGAAATTAAAGATAGTTACTGGTTAAATTGTGAAGACCCTGAAAATGAAAGACGACCAGAGAATGCTTTTGTTGGGCTCAAGAACCTTGGAGCTACATGTTATGTCAATACATTTTTACAGGCAGGTAAATTTATAGTAGGACAAGGTTGTCCCCCACTAGCTGTAAATGGTTTGTCAACATCAGAAGCTATACAAAGCAGCCCAGAACACCCTGAGGTGACTAATCATAGCAGTCATAATGGTGAAACCTCAAATAAACCTTCCAAAGATTCTTCTGAATTTAGTCATGGCAGCAGTGAGAATAGGGAATCCCTGGATAAATCTCTTGGTGTGCGAACAACTCCCAGTAAGGTGTCCACTGTCCAGCAGGCTCCGTTACTTCCCTCTACAACCATACTGGACTCCGATGAAGCACCAACAACTGTTTGTGGACATCTTCAGCTGTTGTTTGCTCAGTTGCAGTACAGTTTTCGAAGATACATTGATCCAAGTCCATTTGTTGACAGTTTAGGACTTGACACAGCACAACAGCAGGATGCTCAAGAATTTAGCAAGCTATTTACTTCATTACTTGAAGAAACTTTCTCAAATCAGGCTGAGCCTGAGGTGCAGAATATTGTTCAGTCTCAGTTCAGAGGGGACTACTTCTATGTCACAGAATGTTTGAAGTGTGGAAACAAATCCAAGAGGCTCTCTCGCTTTTATGAACTGGACCTTAACATCCAAGGCCACTCCTCATTGAACCAGTGTATCAAGGAGTTTTTAAAGGAAGAAAAGTTGGATGGTGACAATCAGTACTATTGCACTCAGTGTAATAGCAAACAGAATGCAGCTCGTTACATTGAACTAGACTCCCTTCCTCCTGTGCTCAATTTGCAGCTGTTGAGATTTGTCTTTGACAGGAAAACAGGATACAAAAAGAAACTGAACTCATTCATTCAGTTTCCAGATAATCTTGATATGACAGAACATGTCAAGAATGGAGGCTTTGGGTCCAACCTTGAGTATGAGCTGAGTGCAGTTTTGATGCATTTTGGAGTCAGTGCATATTCAGGGCAATATGTAGCTCACATCAGAGACAAGAAGTCTGGGTCATGGTACAAGTTTAATGATGAAGACATTGTCAAGATGCAAGGAAAGTTGAAGCTTTCTCAGGATGAGGACTCAACAGGCGACACAGACACCAGTCCCAAGCCTGCCAAAAGGCCAAAATGTGCTCAAGGATTTCATGTGTCAAAAAATGCGTACACTCTGGTGTACACTTTGAAAGGGCATAAAGGTGCAGATGAAGATTATGAATGGATTTCTACCAAATGGCTGAAGGACTGGATGAATGAAAAAACTGAGACACCGCCAGTGGACAACTCCTCTTTGCTCTGTTCTCATGGAAAACTTCATCCAAATCAAGTGCTTAATGCCAAGAGGATCAACGTCAAAGCTGCTGATGAAATATTCAGAAATTACGGTGGTCTGCCCAGACTTCAAAGTGATTCTCTGTGTATCAAATGTGTAAAAGAGCAGTGTAGAAGAATACGATTCGAAACTCGGCTGACTGATGACTACAAGTTTGTGTCAGATGCTTTGAAGTCTCAGCAATCCAACAGTGCAAATTTTTTTTGGGTTGGTCGGCGCTCGCTTCTTCGATGGAAAGCTTTGGCAAATTGCGAAGAAGAGACACGACAAAGTTTGATGGACAGCTGTCGAGTTACAGCCAATCACGAAACAGAAGACGATGACTACGATAAGGCCAAAGAGAATGAAACTAGTGATGCAAGCATGACAGAAGACGGGGGAAAACAACAGAAGTTGGACAGGGATCTACAGCACACCGCTGAGGAGGAGGAGGAGGAGGAGGACGAAACAAATTCTAAATTTAATGAAGATTTGCTTTGTGAACACGGTGGTCTCTCCTCTGACGAATCGTGTCGACGCCTTGTACCAGATGTGGTGTGGCAGAGGTTGAAATATTACTTTCCTTCCTCGTCTGAATTCCCAGCTGCTCATTCAGCGTGCAGAGCTTGCCAGGCAGATGATGAAGAAGAGCGTCAGAAGAATGAGCTTCACAAACTACTTGCTTCAGAGCAGAGAACTGCTATGAGTCAATTGTATCTCGACAGGAACCGGCCGTCGTTTGATAACTGCGATTCGTTCGTTGCCTGTGCGGTATCAAAAGATTTTATCGATCGATGGAGGCAGTTCTTAAGGTACCCCATAAGGAATATTCCGCCTGGAAGAATTATTAATGCACCTTTGCTTTGCCCCCATGAGAAGTTCCTCTTCAATCCTGGCTGCGAAGATGACGTGGATGGTGCGAGCGAAATGCATCGTAAACAACGTGGAGAAGTCTCGCTCACTGTTGGATCATCTGAGACCTTACGGGATGTCAAAGTACAGTTGATGAAGAGTTTCTCGGTGATGCCGATAGACCAGCACCTCACCTTAAATGGCATCCCTCTCACTGACAATGCAGCTACGCTCCGTTCATTAGGAATCAGACCTGGATCTTTATTACTACTGAAGGTCCGTAACATGAGGATACCCTATGATAGTTACATGGCATATCATCCTTAA

Transcript

rna-Spis11568_mrna

ATGGCGCGTCGAACAACAAATCGGAAACAACAAGGAAATGTTCTAAAGCAAGCATGGGGCTGGGCTGATTACACTGAACCAGAAAATGTCATCAAAGATAACGTTGAGAGTGCCTATAGAATAAATACTGCTGCTTGCTCTCAGGGAAATTGCAGGAGGAACTGCAAAGCAAATCCAAACTGTTTCAATTGCCTTGGGGAAAGATTTTGGCTCAGCGAAATTAAAGATAGTTACTGGTTAAATTGTGAAGACCCTGAAAATGAAAGACGACCAGAGAATGCTTTTGTTGGGCTCAAGAACCTTGGAGCTACATGTTATGTCAATACATTTTTACAGgcaggtaaatttatAGTAGGACAAGGTTGTCCCCCACTAGCTGTAAATGGTTTGTCAACATCAGAAGCTATACAAAGCAGCCCAGAACACCCTGAGGTGACTAATCATAGCAGTCATAATGGTGAAACCTCAAATAAACCTTCCAAAGATTCTTCTGAATTTAGTCATGGCAGCAGTGAGAATAGGGAATCCCTGGATAAATCTCTTGGTGTGCGAACAACTCCCAGTAAGGTGTCCACTGTCCAGCAGGCTCCGTTACTTCCCTCTACAACCATACTGGACTCCGATGAAGCACCAACAACTGTTTGTGGACATCTTCAGCTGTTGTTTGCTCAGTTGCAGTACAGTTTTCGAAGATACATTGATCCAAGTCCATTTGTTGACAGTTTAGGACTTGACACAGCACAACAGcagGATGCTCAAGAATTTAGCAAGCTATTTACTTCATTACTTGAAGAAACTTTCTCAAATCAGGCTGAGCCTGAGGTGCAGAATATTGTTCAGTCTCAGTTCAGAGGGGACTACTTCTATGTCACAGAATGTTTGAAGTGTGGAAACAAATCCAAGAGGCTCTCTCGCTTTTATGAACTGGACCTTAACATCCAAGGCCACTCCTCATTGAACCAGTGTATCAAGGAGTTTTTAAAGGAAGAAAAGTTGGATGGTGACAATCAGTACTATTGCACTCAGTGTAATAGCAAACAGAATGCAGCTCGTTACATTGAACTAGACTCCCTTCCTCCTGTGCTCAATTTGCAGCTGTTGAGATTTGTCTTTGACAGGAAAACAGGATACAAAAAGAAACTGAACTCATTCATTCAGTTTCCAGATAATCTTGATATGACAGAACATGTCAAGAATGGAGGCTTTGGGTCCAACCTTGAGTATGAGCTGAGTGCAGTTTTGATGCATTTTGGAGTCAGTGCATATTCAGGGCAATATGTAGCTCACATCAGAGACAAGAAGTCTGGGTCATGGTACAAGTTTAATGATGAAGACATTGTCAAGATGCAAGGAAAGTTGAAGCTTTCTCAGGATGAGGACTCAACAGGCGAcACAGACACCAGTCCCAAGCCTGCCAAAAGGCCAAAATGTGCTCAAGGATTTCATGTGTCAAAAAATGCGTACACTCTGGTGTACACTTTGAAAGGGCATAAAGGTGCAGATGAAGATTATGAATGGATTTCTACCAAATGGCTGAAGGACTGGATGAATGAAAAAACTGAGACACCGCCAGTGGACAACTCCTCTTTGCTCTGTTCTCATGGAAAACTTCATCCAAATCAAGTGCTTAATGCCAAGAGGATCAACGTCAAAGCTGCTGATGAAATATTCAGAAATTACGGTGGTCTGCCCAGACTTCAAAGTGATTCTCTGTGTATCAAATGTGTAAAAGAGCAGTGTAGAAGAATACGATTCGAAACTCGGCTGACTGATGACTACAAGTTTGTGTCAGATGCTTTGAAGTCTCAGCAATCCAACAGtgcaaattttttttgggtTGGTCGGCGCTCGCTTCTTCGATGGAAAGCTTTGGCAAATTGCGAAGAAGAGACACGACAAAGTTTGATGGACAGCTGTCGAGTTACAGCCAATCACGAAACAGAAGACGATGACTACGATAAGGCCAAAGAGAATGAAACTAGTGATGCAAGCATGACAGAAGACGGGGGAAAACAACAGAAGTTGGACAGGGATCTACAGCACACCgctgaggaggaggaggaggaggaggacgAAACAAATTCTAAATTTAATGAAGATTTGCTTTGTGAACACGGTGGTCTCTCCTCTGACGAATCGTGTCGACGCCTTGTACCAGATGTGGTGTGGCAGAGGTTGAAATATTACTTTCCTTCCTCGTCTGAATTCCCAGCTGCTCATTCAGCGTGCAGAGCTTGCCAGGCAGATGATGAAGAAGAGCGTCAGAAGAATGAGCTTCACAAACTACTTGCTTCAGAGCAGAGAACTGCTATGAGTCAATTGTATCTCGACAGGAACCGGCCGTCGTTTGATAACTGCGATTCGTTCGTTGCCTGTGCGGTATCAAAAGATTTTATCGATCGATGGAGGCAGTTCTTAAGGTACCCCATAAGGAATATTCCGCCTGGAAGAATTATTAATGCACCTTTGCTTTGCCCCCATGAGAAGTTCCTCTTCAATCCTGGCTGCGAAGATGACGTGGATGGTGCGAGCGAAATGCATCGTAAACAACGTGGAGAAGTCTCGCTCACTGTTGGATCATCTGAGACCTTACGGGATGTCAAAGTACAGttgaTGAAGAGTTTCTCGGTGATGCCGATAGACCAGCACCTCACCTTAAATGGCATCCCTCTCACTGACAATGCAGCTACGCTCCGTTCATTAGGAATCAGACCTGGATCTTTATTACTACTGAAGGTCCGTAACATGAGGATACCCTATGATAGTTACATGGCATATCATCCTTAA

Protein

Gene family

Family type	Membership / link
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species
Ubiquitin family	DUB\|USP\|USP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF06337 all species →	DUSP	DUSP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR033841 all species →	Domain	Ubiquitin-specific peptidase 48	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR044743 all species →	Domain	Ubiquitin-specific-processing protease 48, Ubl domain	Interproscan
IPR050164 all species →	Family	Ubiquitin carboxyl-terminal hydrolases	Interproscan
IPR035927 all species →	Homologous_superfamily	DUSP-like superfamily	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR006615 all species →	Domain	Peptidase C19, ubiquitin-specific peptidase, DUSP domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24006 all species →	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan
GO:0004197 all species →	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX23853.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.