Gene detail

Detailed information of PFX23987.1 in Stylophora pistillata

Genomic Location: Spis.scaffold190:307508...313884
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-Spis11442_mrna

TGAAACTTTCCGAAAAGGAGTGAATTTCAtattagctttgaaactctttccTTCGGAATTATGGGGACTCAGTCCTTGGAGAGACTGGTATTGGAGGCTGTGGAAGAGCGAGGGAGTATCGAGACTTTCGAATTTTCCAAAGAACTTGGGAAAGATCATCAATCTATTGTTGGAAGTATAAAGAGCATCCATGCTCTTGGGGATGTGGTAAATGTTGAACAACGACAAGCAGAAGGCTGGGTGCTGACAGACGAAGGAAGTGAAGTTGTAGAGAAAGGAAGCCATGAGTTTCTTGTGTTCAAAGCTGTTCCACCCGAGGGATTACCTCAAGCGGAAATAAAGAAGCTTGGTCCACATGCTAATGTTGGTTTTAGTAAAGCTATGTCAGCTGGATGGCTTCAGCTGAACAAGAATGCTGAGGGAGGACCCAGGGTTATGAGGAAGGCCGAGGATGTAAAAGATGATGTCCAACTGGCACTCATAAAAATCAGGGATCAGCAGCTTTCAGACATCCCCGATGTAAAGATGAAGGAATTCAAGAAAAGGAAGCTAATCAAGACACAGGTCATCAAGAGCTTTTATGTGACCAAAGGCACTGAATTTACCACATCACCAACAAAACTAGAAGCTGATTTGACAGCAGACATGCTTGCAAGTGGTTCTTGGAAAGAGAAGCAATTCAAGCCATACAATTTTGATGCACAAGGAATCTTACCAACATCAGGACATCTTCATCCTTTGATGAAAGTTAGAGCCCATTTCAGACAAATCTTCTTAGAAATGGGGTTTACAGAAATGCCTACAAACAACTTTGTGGAGAGCTCCTTCTGGAATTTTGATTCATTGTTTCAGCCTCAACAGCACCCAGCCAGGGATGCACATGACACCTTTTTTATGGCAGAACCAAAATATGCCAAGCTAAAGGAAATGCCTGAGTCTTAtattgaaaaagtgaaaaacatgcATGAATCTGGAGGACATGGATCACAGGGATATAAATATGAGTGGAAACTTGAAGAAGCCAAAAAGAACATTCTCAGAACTCATACAACTGCTGTTAGTGCAAGGATGCTGTACAAACTGGCTCAACAGGAGAAATTCACACCAGCTAAGTATTTTTCAATTGATCGAGTGTTTCGTAATGAGACCTTAGATGCCACTCACTTAGCAGAGTTTCATCAGATTGAAGGTGTTGTGGCAGATTATAATCTGACACTTGGGGATTTGATTGGAGTGCTCTATGAGTTTTTCAAGAAGCTAGGTATTACACAGTTAAGATTCAAGCCAGCATACAATCCTTATACAGAGCCAAGCATGGAAGTTTTCAGTTACCACGAAGGCCTCAAGAAGTGGGTTGAAGTTGGCAATTCAGGAGTGTTCAGACCTGAAATGTTACTCCCAATGGGCTTACCAAAAGATGTGTCTGTTATTGCTTGGGGACTCTCTTTGGAAAGGCCAACCATGATCAAGTACAAGATTTCAAACATCAGGGATTTAATAGGACACAAAGTGGACCTTGAAATGGTTCATAAGAATCCAATCTGTCTTCTTGAGAAATCTAATTGAACACAAAAATGTATTCCACTTCATTCTTTGCTGAAGTGGTGTTGAATATTTTTACAGAATTCTCAACCTCACAATTTTACCACCAGTTGTCAAGTTTCAAAGTATGTCctatattagaaaaaaaattcctataagtaatttttttaagcactTTTAGTATTTAAAATGGTGTGTGCAACGACTGTGTAACACTTATTCTTTTCTTAGCTGTCATTCAGTTGGTGTGGGTGTGCACATTGCAGTTGCTCCCTAATAAAATTGAAGCCAAAGGGCTAACATTGCAAtgtcagttttagaaactcttGACGGTTGTCAGTGTACATTGTTGACTTGgttgacaaaaccaaagtaaGTGATTGGAATGTTAAGAAACTCGCATGCAAAAGTTTATCAGTCTGTAGTATTTTAGTTGCTTTAATTTAAGTGTTTAGTGATTAATATAACTATTAGGCCAGTCTTTGTCACCTCTGATCTGAGTACCCCAATCCCCAACTGTTCCCTTCCTTAGCACACtatttccattcctttctcCACTTTTAAAAAAGTGTGGAGACTGGGGCTTGTGGCTGAGTGATGAGGACTTCCACAAGTCCATCCCAGGAGAGCCATGAACTAACTaaaggtaatttgggttttcATAACTCATTGTAGCACCAAATTTACAACAAAGCAAAGTTTTTGTGcagttgttttattttcagatcTTCAGTATTAATTTTTGCTTCTTGCTGAAAGCTGTCCGGTGCTTTAAGAAGGCAATTTTCAGTGTCACAAAAATACAATAATGCTGTTACAGTAGCTGTAATAGCACCTTATAGTTGCTACACTGATGAAACACATTCTACGAGGACTGCTAAAAATAACACTGTTACATAAATACTTAAATCCTCTGCCAGTGATAACCTGATGTCATGtataatggaaaaaaatctgCAAATAAAATCTGCA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01409 all species →	tRNA-synt_2d	tRNA synthetases class II core domain (F)	Domain	Interproscan
PF18553 all species →	PheRS_DBD3	PheRS DNA binding domain 3	Domain	Interproscan
PF18552 all species →	PheRS_DBD1	PheRS DNA binding domain 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004529 all species →	Family	Phenylalanyl-tRNA synthetase, class IIc, alpha subunit	Interproscan
IPR002319 all species →	Domain	Phenylalanyl-tRNA synthetase	Interproscan
IPR045864 all species →	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR040725 all species →	Domain	PheRS, DNA binding domain 3	Interproscan
IPR040724 all species →	Domain	PheRS, DNA binding domain 1	Interproscan
IPR006195 all species →	Domain	Aminoacyl-tRNA synthetase, class II	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11538 all species →	PHENYLALANYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004826 all species →	Molecular Function	phenylalanine-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006432 all species →	Biological Process	phenylalanyl-tRNA aminoacylation	Interproscan
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0043039 all species →	Biological Process	tRNA aminoacylation	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0009328 all species →	Cellular Component	phenylalanine-tRNA ligase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01889	FARSA, pheS; phenylalanyl-tRNA synthetase alpha chain	EC:6.1.1.20	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.