Gene detail

Detailed information of PFX23997.1 in Stylophora pistillata

Genomic Location: Spis.scaffold190:296559...306543
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

HIS4

ATGATAATTCCAAGTGTATATCTGAAAGCAGGGACTCTAGTGGATCCAAAGGATGGAAAAAATGTTGAAGATGTGGCAGGCTGCCTCGATACAATTTCTTTGTGCCCAGAGTTTACCATAGTGTACCTTGATAAACTCCAGGAAACAAAAGAATTTGGGAAGAAAGCTATGCTTATAACCTCCTGCTGCGTGGAAATTGAAGTGAACTCTGAGGATGAGGTGTTAGATTTACTAGATACTGGTGCAAACCGTGTCATCCTTAACAGAGATCGCCTACTGCATGACTGGGGAGAATTTTTACCCAGAGAAAGAATTGTCTGCAAGTTACCTTATGAAAATTGCTTTATCGCAGAATTGGCCAAAGAAATCAATGACCTAAAACACAGATCTTGCACCTTTCTTTTGTGTCCACAAAAAGCCTCCCTTGCTGATGAAACATGCCTTGTTGAGTCCATAAAAGAACTTAAGACCCACTTGCGTGACGATGTGAAACTCATAATATCAATCAGTGGGGTGATTTTGTGCTCAACCATCTCTCAGCTTCACTTCCTCGGGGTTCAGCTTCAACTAAGTACAACTTGGTTACTAAACGAACTCAGTCTTGGAGAGATTATTGCATCCTGTCTGAAAAGTGACCGATCTGATGGACTTTACCCAACTCTTGTGACAGATGAGCATAACATTGCATTAGGATTGTGTTACTCAAGTTCTGAGAGTATCCAAGAAGCAGTGAAAACTAAGAAAGGGGTTTATTTTTCAAGAAAAAGGGGACTATGGAGGAAAGGAGAAACATCAGGAAATCAACAGGATTTGTTGCGAATTTATTTAGACTGCGATTGTGATACCCTAAAGTTTGTTGTGCGTCAACTTGGTCAAGGATTCTGCCACCTTAACACATGGACTTGCTTTGGAGCTAACAATGGTTTACCATCACTTATGAATATATTAAGATCTCGCAAAGAGTCAGCACCTCCAGGATCATACACAAGTCGCTTGTACAATGATAATAAACTGCTGCATGCTAAGATTCGTGAAGAGGCAGAGGAATTGTGTGAATCAGAAACAAAAGAAGAGATTACTTGGGAAGCAGCTGATGTTTTGTATTTTACACTAGTAAAATGTGCCAAGGCAGGAGTTTCTCTGAGTGATATTGAAAAGGTTCTTGATCAAAGGTCACTGAAGGTTAGACGACGTCCTGGTAATGCCAAACCTGGCAAAATCTCTTCCTGTAATGGCCGCCCTGTAACTGTGGAAAGGGAACATGCTCCTGCCCAGGCTGACTCAGCCATGGTCAGTGTTCAAAACTCTGTTTTAAGAAGCTTTGATTTTGAGCTTCTTAGTGATAAGGAATTACACGATCTTTGTAAACGTCCTGCAGTGGTTGATAACGAGAAACTAGAGGCTGTTGTAAAACCAATCTTGACCAATGTGCGAAACAATGGAGACAAGGCTTTACTGGAATTAACAGAAAGGTTTGATAAAGCTAAGTTGAGCAGTCCTGTGATCAACATGTCTGCCACAGATGAACCAGTCCTTGATAAAGAGGTAAAGGATGCAATTGATTTGGCTTACAACAACATCTTCAAGTTCCACAAGGCACAACTTGACCTGGAGCCTCTTGTGATAGAAACTTGCAAGGGTGTGGTTTGCTCTCGGCATGTTAGACCCATTGAAAGAGTTGGCCTGTATGTCCCAGGTGGTAGTGCTGTTTTGCCATCAACAGCACTTATGCTGGGTATTCCAGCCCAGGTGGCAGGATGCAAAGAGGTTATTTTGGCCACCCCACCCAAACAGGATGGTTCAGTTTCTCTTGAAATCCTTTACATTGCAAGAAAAGTTGGTGTTTCCAAAATATTATTAGCAGGTGGGGCTCAAGCAGTGGCAGCAATGGCTTATGGAACAGAAAGTGTTCCAAAGGTGGACAAACTGTGTGGTCCAGGAAACTCATTTGTTACTATGGCTAAAATGTTGGTGCAGAATGACAGTTCAGCTTGTGTCAGCATTGATATGCCTGCAGGACCATCAGAAGTTATGGTCATTGCTGACGAAAGTGGAGATCCATCATTTGTGGCAGCTGATCTGTTATCCCAGGCAGAGCATGGAACAGACAGTCAAGTGGTACTGGTGGCTGTTAATTTGAATGACAACCAGCTTGATGCAATTCAGAGTCAAGTGGATGCTCAAGCAAAGAAACTTCCTCGTGAAAAAATTGTCAGAGAATCTCTATCAAAGAGCTTTGTAATAAAAGTGTCAAATATTAGTCAGGCTCTGTGCTTCAGTAACAAATATGCTCCAGAACATCTCATCATCAACACAAAGAATGCTGAAGATTGTTTAAAAGATGTACAGAATGCAGGGTCTGTATTTCTTGGGCCATATTCCTCAGAGAGTTGTGGAGACTATGCAAGTGGTACAAACCACACCCTTCCAACATATGGCTATGCTCGCATGTACAGTGGTGTATCAACAGCATCATTCCAGAAACATATCACAGCCCAGCAGGTAACAAAGGAGGGTTTGGCTAACATTGGGCAAGCAGTAGCTACACTTGCTGCAGTGGAGAAACTTGATGCTCACCGTAATGCAATTTTGATCAGGCAGAAACAGATAAATGGCTCATTGTAG

Transcript

rna-Spis11439_mrna

CTCGGCTACCTCTCCACGTGAGGAACACTTTTTAAATAATcgataatttaattatttttattttcaatcttttaCCACGTTGAAAATGATAATTCCAAGTGTATATCTGAAAGCAGGGACTCTAGTGGATCCAAAGGATGGAAAAAATGTTGAAGATGTGGCAGGCTGCCTCGATACAATTTCTTTGTGCCCAGAGTTTACCATAGTGTACCTTGATAAACTCcaggaaacaaaagaatttggGAAGAAAGCTATGCTTATAACCTCCTGCTGCGTGGAAATTGAAGTGAACTCTGAGGATGAGGTGTTAGATTTACTAGATACTGGTGCAAACCGTGTCATCCTTAACAGAGATCGCCTACTGCATGACTGGGGAGAATTTTTACCCAGAGAAAGAATTGTCTGCAAGTTACCTTATGAAAATTGCTTTATCGCAGAATTGGCCAAAGAAATCAATGACCTAAAACACAGATCTTGCACCTTTCTTTTGTGTCCACAAAAAGCCTCCCTTGCTGATGAAACATGCCTTGTTGAGTCCATAAAAGAACTTAAGACCCACTTGCGTGACGATGTGAAACTCATAATATCAATCAGTGGGGTGATTTTGTGCTCAACCATCTCTCAGCTTCACTTCCTCGGGGTTCAGCTTCAACTAAGTACAACTTGGTTACTAAACGAACTCAGTCTTGGAGAGATTATTGCATCCTGTCTGAAAAGTGACCGATCTGATGGACTTTACCCAACTCTTGTGACAGATGAGCATAACATTGCATTAGGATTGTGTTACTCAAGTTCTGAGAGTATCCAAGAAGCAGTGAAAACTAAGAAAGGGgtttatttttcaagaaaaagggGACTATGGAGGAAAGGAGAAACATCAGGAAATCAACAGGATTTGTTGCGAATTTATTTAGACTGCGATTGTGATACCCTAAAGTTTGTTGTGCGTCAACTTGGTCAAGGATTCTGCCACCTTAACACATGGACTTGCTTTGGAGCTAACAATGGTTTACCATCACTTATGAATATATTAAGATCTCGCAAAGAGTCAGCACCTCCAGGATCATACACAAGTCGCTTGTACAATGATAATAAACTGCTGCATGCTAAGATTCGTGAAGAGGCAGAGGAATTGTGTGaatcagaaacaaaagaagagatTACTTGGGAAGCAGCTGATGTTTTGTATTTTACACTAGTAAAATGTGCCAAGGCAGGAGTTTCTCTGAGTGATATTGAAAAGGTTCTTGATCAAAGGTCACTGAAGGTTAGACGACGTCCTGGTAATGCCAAACCTGGCAAAATCTCTTCCTGTAATGGCCGCCCTGTAACTGTGGAAAGGGAACATGCTCCTGCCCAGGCTGACTCAGCCATGGTCAGTGTTCAAAACTCTGTTttaagaagctttgattttgAGCTTCTTAGTGATAAGGAATTACACGATCTTTGTAAACGTCCTGCAGTGGTTGATAACGAGAAACTAGAGGCTGTTGTAAAACCAATCTTGACCAATGTGCGAAACAATGGAGACAAGGCTTTACTGGAATTAACAGAAAGGTTTGATAAAGCTAAGTTGAGCAGTCCTGTGATCAACATGTCTGCCACAGATGAACCAGTCCTTGATAAAGAGGTAAAGGATGCAATTGATTTGGCTTACAACAACATCTTCAAGTTCCACAAGGCACAACTTGACCTGGAGCCTCTTGTGATAGAAACTTGCAAGGGTGTGGTTTGCTCTCGGCATGTTAGACCCATTGAAAGAGTTGGCCTGTATGTCCCAGGTGGTAGTGCTGTTTTGCCATCAACAGCACTTATGCTGGGTATTCCAGCCCAGGTGGCAGGATGCAAAGAGGTTATTTTGGCCACCCCACCCAAACAGGATGGTTCAGTTTCTCTTGAAATCCTTTACATTGCAAGAAAAGTTGGTGTTTCCAAAATATTATTAGCAGgtGGGGCTCAAGCAGTGGCAGCAATGGCTTATGGAACAGAAAGTGTTCCAAAGGTGGACAAACTGTGTGGTCCAGGAAACTCATTTGTTACTATGGCTAAAATGTTGGTGCAGAATGACAGTTCAGCTTGTGTCAGCATTGATATGCCTGCAGGACCATCAGAAGTTATGGTCATTGCTGACGAAAGTGGAGATCCATCATTTGTGGCAGCTGATCTGTTATCCCAGGCAGAGCATGGAACAGACAGTCAAGTGGTACTGGTGGCTGTTAATTTGAATGACAACCAGCTTGATGCAATTCAGaGTCAAGTGGATGCTCAAGCAAAGAAACTTCCTCGTGAAAAAATTGTCAGAGAATCTCTATCAAAGAGCTTTGTAATAAAAGTGTCAAATATTAGTCAGGCTCTGTGCTTCAGTAACAAATATGCTCCAGAACATCTCATCATCAACACAAAGAATGCTGAAGATTGTTTAAAAGATGTACAGAATGCAGGGTCTGTATTTCTTGGGCCATATTCCTCAGAGAGTTGTGGAGACTATGCAAGTGGTACAAACCACACCCTTCCAACATATGGCTATGCTCGCATGTACAGTGGTGTATCAACAGCATCATTCCAGAAACATATCACAGCCCAGCAGGTAACAAAGGAGGGTTTGGCTAACATTGGGCAAGCAGTAGCTACACTTGCTGCAGTGGAGAAACTTGATGCTCACCGTAATGCAATTTTGATCAGGCAGAAACAGATAAATGGCTCATTGTAGAAAATTCTAGTGTCATAAGAGAGTGACAGTatgcagtggcggatccagggtagggtccggggggtccggacccccctaCCAGACCTGATGCTTgcaactttgagactgaaacaCTTACATACAAGTGAGGattgtatatcacttttaactggctgatcttttttaattaatttaagtaAGTGGTAAGCAGCCAAGGAACTTATAACATGCAACTGTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01502 all species →	PRA-CH	Phosphoribosyl-AMP cyclohydrolase	Family	Interproscan
PF00815 all species →	Histidinol_dh	Histidinol dehydrogenase	Family	Interproscan
PF01503 all species →	PRA-PH	Phosphoribosyl-ATP pyrophosphohydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012131 all species →	Family	Histidinol dehydrogenase	Interproscan
IPR038019 all species →	Homologous_superfamily	Phosphoribosyl-AMP cyclohydrolase domain superfamily	Interproscan
IPR002496 all species →	Domain	Phosphoribosyl-AMP cyclohydrolase domain	Interproscan
IPR001692 all species →	Conserved_site	Histidinol dehydrogenase, conserved site	Interproscan
IPR016161 all species →	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan
IPR016298 all species →	Family	Histidine biosynthesis trifunctional-protein	Interproscan
IPR008179 all species →	Family	Phosphoribosyl-ATP pyrophosphohydrolase	Interproscan
IPR021130 all species →	Family	Phosphoribosyl-ATP pyrophosphohydrolase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21256 all species →	HISTIDINOL DEHYDROGENASE HDH	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000105 all species →	Biological Process	L-histidine biosynthetic process	Interproscan
GO:0004399 all species →	Molecular Function	histidinol dehydrogenase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0051287 all species →	Molecular Function	NAD binding	Interproscan
GO:0004635 all species →	Molecular Function	phosphoribosyl-AMP cyclohydrolase activity	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0004636 all species →	Molecular Function	phosphoribosyl-ATP diphosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14152	HIS4; phosphoribosyl-ATP pyrophosphohydrolase / phosphoribosyl-AMP cyclohydrolase / histidinol dehydrogenase	EC:3.6.1.31 EC:3.5.4.19 EC:1.1.1.23	Histidine metabolism	ko00340	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.