Gene detail

Detailed information of PFX24053.1 in Stylophora pistillata

Genomic Location: Spis.scaffold187:234186...256057
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ndufs2

ATGGCGGCGAGTGTTGTTCGTCAGTGTGGTCGCCATTTTCTTGGCAAATCATTAATCCGTCGTGTGCCTGTGGTTTCTTCTGTCCGACATCTACGACGGCTCCCTGTGAGTGAAGTAGAAGAGGAAATGAAACCACTGAAGTTGCAGGGTGAATTAGCCTCCATGGCAGGAACTATCATGTACCCGAATGAAGAGTCTGCCAAGTGGGACGTAGATGTTCCTATTCAGGAAAAACTGGTTACAAACATGACAGTCAACTTTGGTCCCCAACATCCAGCTGCCCAGGGAGTGTTAAGGCTTGTTCTGGAACTTGATGGAGAGGTTATTATACGTGCAGATCCACACATTGGCCTTTTGCATCGTGCAACTGAGAAGTTGATAGAGTACAAAACATATCTGCAGGCTCTGCCTTACTTTGATCGCTTGGATTATGTTTCCATGATGACAAATGAGCAGTGCTACTCTTTGGCAGTGGAGAGACTTCTAAACATCGATATTCCAGAAAGGGCTAAATGGATCAGAGTGTTGTTTGCAGAGATCACCAGAGTACTGAACCATATCATGGGTGTAGGTACTCATGCTCTTGATGTAGGTGCCATGACACCATTCTTTTGGCTGTTTGAGGAGAGAGAAAAGTTGATGGAATTTTATGAACGTGTATCTGGTGCACGCATGCATGCTGCTTATGTAAGACCAGGAGGAGTTTCCCTGGACATGCCAATTGGTTTAATGGATGACATCTATGACTTCATTTCAAAGTTTGCTGAGAGACTAGATGACCTTGAAGAGATGTTGACAAACAACAGAATCTGGAAACAGCGCACTGTTGATATTGGAGTGGTAACGGTGGAGGACGCCCTTAATTGGGGTTTCAGTGGAGTCATGTTACGTGGATCTGGAGTTAAGTGGGATCTGCGAAAATCCCAGCCATATGATGCGTACGATCAAGTGGAGTTTGATGTTCCCATTGGCAAAAATGGAGACTGTTATGACAGGTATTTGATTAGAGTTGAGGAAATGCGGCAGAGTTTGAGAATTATTGAGCAGTGTCTAAACAAGATGCCTGCAGGAGAAATTAAAGTGGATGATGCCAAAATCTCACCACCAAAGAGGGCAGAAATGAAGGAGTCCATGGAAGCACTTATTCACCACTTTAAGCTTTACACGGAAGGTTACCAAGTGCCACCCGGTACAACGTACACAGCGATTGAGGCTCCCAAGGGAGAGTTTGGTGTTTATCTTGTTTCTGATGGCACCAGTAGGCCTTATCGCTGTAAAATAAAAGCTCCTGGATTTGCACATTTGGCTGGTTTGGAAATGATGTCAACTGGTCACATGTTGGCTGATGTTGTAGCCATTATTGACAATGCAGAATATTTTGAACAGTACACAAGCAAGGAAGTTTATAAAAAGCTCTACGATGGTTTTAAACTGATGCTATCAACCATAGATTCTTTGGAAAAAGGAGCAATTTTGCTCGCGAAGGCAGCACCCTTATACGACTACAGTAAAGATATCAAGGGAAATGGCTATAGGAGTTTACTAAGGCTTGTTGAACATTGCCTTCATTCTGTTACAGAGCTATCTATCTATTGCCAAACTCATCGAGATAGATTTTATTTTCGATCTCACCACTACAGCTTGGAAGTCGAAGCTTTCTCCAATGTTTTTCAAAGGACAAGTCAATTGTTACAATTTGCTAAGATTGTGGTTGAAGACAGTGTGCCAGACAACTTATTCCCTGAGAACTTTGACTCTAAAGTCATGTTGGAAGTTGAGCAGTTGGATAGAGAGTGCTTTTATGGCAGAACTTTGGGTTTTCAGTTCTCTAGCAGTTTGCGGCATTTCTTACAAGTTGTCTGTGTGGCAATGGCATCATTTGCTGAAGGTTATCATCATCACAAGCTGAGCAGCATGGCATGTGCAACAGTATCTTTCTTAAACAGTGGGAAGTACACCGTGAATCCTGAGATGAGAGCCAAGGTGATTGTGGATGTGACACAGAAAACTAACATGGAATTCTGTAAAGCTTTCTGGAGTTTGACAGAAGGTTATGGACTTCAGCATGTGCCCTTGCTTGTTTGTTCTGCAATGAAAGTGAACAGAGTGTTCTATATTCCTCCGGAGTCATTTGAACTTCAGTTGTCGAATGGGAAGTCTGTGAGTATTGCTCCACCCTGTTCTTGGTCTGGTCTGGCTCCAGTTCAAGTGCGACTTTTGTCATATGAATGGAGGGAAGGGCAGAGTAGAGATGGAAGTGACAGTCTCTCGCACCATGGCCGATCACCAAAGCCCAAAAGTGATGGCATGATACTTCATGTGCATGGTGGAGGCTTTGTCGCCCAGTCATCAAAATCACATGAGTATCACCTTAGAATCACACATCAAGGTGGCAATTTGTGTGTATCACTGAGCATGCGTGCAGCAGAGGTTGGCATCCGTACACCAGACTCCATTCTAGCTGCCTATGCACCTTTCAATGTACAGTGGGTACCCTCTCCCTCCCGTCTGCTGAGCCTTATGGACCCACTACTTCCTACAGGGTTGTTAGGTGCTTGCCTGGCGGCCTACTCAGGTATGGACAAGTCACCCTTTGATGACTGCACTACAAATTCAATAAAATCTTTAACAGGTAAAACTACCCAGCCATTGAGTGTTGTGAAAAGGAGGAAGACAAACTCTCTCTTGAGATTACTAAGAGTTGGCTCTAAGGAGGCTAAACTTGCCAGGAGTGGTAGCCACTCAGAAGTCCTTTCGCCATCAGGGCCAGAGAGTTTCCATAGTTGTTTAAGCTCGCCGCAGTTTGAAGATACAGAGACTATCAACAACATGGCAAGCGCAAACACTGAGAAAGCCGCTGGTCATCACTGCACTAGTGTGGTGCATTCATCAGAGGAACATCTAGAGGATAGTGTCTCGGACCAAGAAAAGGATTCTGAAATAAGTAGCTCTTCATCTCGTCACCCACACTCCAGAAGACATTCCCAAGACACCACGCCCAGTAGACCCATAACTCCTCAGAGAAGCAAAAATGGCGGAGGAGACGAGATGGAACATATAGGAGTTCACTACCATAGGGACATTGAAGAGTGCCACGTGGTGAACGTGGTAGAATCTCCTGAGAGCCCAAGTGGAGAGCTTCTTTTGCTTCCTCTTGAAATATCTCAAGATGAGCCATACGAAGAGGTTGGCACATCGCCAGATGAGGACGAGTAG

Transcript

rna-Spis11348_mrna

atggcggcgagTGTTGTTCGTCAGTGTGGTCGCCATTTTCTTGGCAAATCATTAATCCGTCGTGTGCCTGTGGTTTCTTCTGTCCGACATCTACGACGGCTCCCTGTGAGTGAAGTAGAAGAGGAAATGAAACCACTGAAGTTGCAGGGTGAATTAGCCTCCATGGCAGGAACTATCATGTACCCGAATGAAGAGTCTGCCAAGTGGGACGTAGATGTTCCTATTCAGGAAAAACtggttacaaacatgacagtcAACTTTGGTCCCCAACATCCAGCTGCCCAGGGAGTGTTAAGGCTTGTTCTGGAACTTGATGGAGAGgtTATTATACGTGCAGATCCACACATTGGCCTTTTGCATCGTGCAACTGAGAAGTTGATAGAGTACAAAACATATCTGCAGGCTCTGCCTTACTTTGATCGCTTGGATTATGTTTCCATGATGACAAATGAGCAGTGCTACTCTTTGGCAGTGGAGAGACTTCTAAACATCGATATTCCAGAAAGGGCTAAATGGATCAGAGtgTTGTTTGCAGAGATCACCAGAGTACTGAACCATATCATGGGTGTAGGTACTCATGCTCTTGATGTAGGTGCCATGACACCATTCTTTTGGCTGTTTGAGGAGAGAGAAAAGTTGATGGAATTTTATGAACGTGTATCTGGTGCACGCATGCATGCTGCTTATGTAAGACCAGGAGGAGTTTCCCTGGACATGCCAATTGGTTTAATGGATGACATCTATGACTTCATTTCAAAGTTTGCTGAGAGACTAGATGACCTTGAAGAGATGTTGACAAACAACAGAATCTGGAAACAGCGCACTGTTGATATTGGAGTGGTAACGGTGGAGGACGCCCTTAATTGGGGTTTCAGtGGAGTCATGTTACGTGGATCTGGAGTTAAGTGGGATCTGCGAAAATCCCAGCCATATGATGCGTACGATCAAGTGGAGTTTGATGTTCCCATTGGCAAAAATGGAGACTGTTATGACAGGTATTTGATTAGAGTTGAGGAAATGCGGCAGAGTTTGAGAATTATTGAGCAGTGTCTAAACAAGATGCCTGCAGGAGAAATTAAAGTGGATGATGCCAAAATCTCACCACCAAAGAGGGCAGAAATGAAGGAGTCCATGGAAGCACTTATTCACCACTTTAAGCTTTACACGGAAGGTTACCAAGTGCCACCCGGTACAACGTACACAGCGATTGAGGCTCCCAAGGGAGAGTTTGGTGTTTATCTTGTTTCTGATGGCACCAGTAGGCCTTATCGCTGTAAAATAAAAGCTCCTGGATTTGCACATTTGGCTGGTTTGGAAATGATGTCAACTGGTCACATGTTGGCTGATGTTGTAGCCATTATTGACAATGCAGAATATTTTGAACAGTACACAAGCAAGGAAGTTTATAAAAAGCTCTACGATGGTTTTAAACTGATGCTATCAACCATAGATTCTTTGGAAAAAGGAGCAATTTTGCTCGCGAAGGCAGCACCCTTATACGACTACAGTAAAGATATCAAGGGAAATGGCTATAGGAGTTTACTAAGGCTTGTTGAACATTGCCTTCATTCTGTTACAGAGCTATCTATCTATTGCCAAACTCATCGAGATAGATTTTATTTTCGATCTCACCACTACAGCTTGGAAGTCGAAGCTTTCTCCAATGTTTTTCAAAGGACAAGTCAATTGTTACAATTTGCTAAGATTGTGGTTGAAGACAGTGTGCCAGACAACTTATTCCCTGAGAACTTTGACTCTAAAGTCATGTTGGAAGTTGAGCAGTTGGATAGAGAGTGCTTTTATGGCAGAACTTTGGGTTTTCAGTTCTCTAGCAGTTTGCGGCATTTCTTACAAGTTGTCTGTGTGGCAATGGCATCATTTGCTGAAGGTTATCATCATCACAAGCTGAGCAGCATGGCATGTGCAACAGTATCTTTCTTAAACAGTGGGAAGTACACCGTGAATCCTGAGATGAGAGCCAAGGTGATTGTGGATGTGACACAGAAAACTAACATGGAATTCTGTAAAGCTTTCTGGAGTTTGACAGAAGGTTATGGACTTCAGCATGTGCCCTTGCTTGTTTGTTCTGCAATGAAAGTGAACAGAGTGTTCTATATTCCTCCGGAGTcatttgaacttcagttgtcgAATGGGAAGTCTGTGAGTATTGCTCCACCCTGTTCTTGGTCTGGTCTGGCTCCAGTTCAAGTGCGACTTTTGTCATATGAATGGAGGGAAGGGCAGAGTAGAGATGGAAGTGACAGTCTCTCGCACCATGGCCGATCACCAAAGCCCAAAAGTGATGGCATGATACTTCATGTGCATGGTGGAGGCTTTGTCGCCCAGTCATCAAAATCACATGAGTATCACCTtagaatcacacatcaagGTGGCAATTTGTGTGTATCACTGAGCATGCGTGCAGCAGAGGTTGGCATCCGTACACCAGACTCCATTCTAGCTGCCTATGCACCTTTCAATGTACAGTGGGTACCCTCTCCCTCCCGTCTGCTGAGCCTTATGGACCCACTACTTCCTACAGGGTTGTTAGGTGCTTGCCTGGCGGCCTACTCAGGTATGGACAAGTCACCCTTTGATGACTGCACTACAAATTCAATAAAATCTTTAACAGGTAAAACTACCCAGCCATTGAGTGTTGTGAAAAGGAGGAAGACAAACTCTCTCTTGAGATTACTAAGAGTTGGCTCTAAGGAGGCTAAACTTGCCAGGAGTGGTAGCCACTCAGAAGTCCTTTCGCCATCAGGGCCAGAGAGTTTCCATAGTTGTTTAAGCTCGCCGCAGTTTGAAGATACAGAGACTATCAACAACATGGCAAGCGCAAACACTGAGAAAGCCGCTGGTCATCACTGCACTAGTGTGGTGCATTCATCAGAGGAACATCTAGAGGATAGTGTCTCGGACCAAGAAAAGGATTCTGAAATAAGTAGCTCTTCATCTCGTCACCCACACTCCAGAAGACATTCCCAAGACACCACGCCCAGTAGACCCATAACTCCTCAGAGAAGCAAAAATGGCGGAGGAGACGAGATGGAACATATAGGAGTTCACTACCATAGGGACATTGAAGAGTGCCACgtggtgaacgtggtagaatcTCCTGAGAGCCCAAGTGGAGAGCTTCTTTTGCTTCCTCTTGAAATATCTCAAGATGAGCCATACGAAGAGGTTGGCACATCGCCAGATGAGGACGAGTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00346 all species →	Complex1_49kDa	Respiratory-chain NADH dehydrogenase, 49 Kd subunit	Family	Interproscan
PF06350 all species →	HSL_N	Hormone-sensitive lipase (HSL) N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014029 all species →	Conserved_site	NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site	Interproscan
IPR001135 all species →	Domain	NADH-quinone oxidoreductase, subunit D	Interproscan
IPR022885 all species →	Family	NAD(P)H-quinone oxidoreductase subunit D/H	Interproscan
IPR029014 all species →	Homologous_superfamily	[NiFe]-hydrogenase, large subunit	Interproscan
IPR002168 all species →	Active_site	Lipase, GDXG, putative histidine active site	Interproscan
IPR010468 all species →	Domain	Hormone-sensitive lipase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11993 all species →	NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016651 all species →	Molecular Function	oxidoreductase activity, acting on NAD(P)H	Interproscan
GO:0048038 all species →	Molecular Function	quinone binding	Interproscan
GO:0051287 all species →	Molecular Function	NAD binding	Interproscan
GO:0005747 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex I	Interproscan
GO:0006120 all species →	Biological Process	mitochondrial electron transport, NADH to ubiquinone	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0008203 all species →	Biological Process	cholesterol metabolic process	Interproscan
GO:0016042 all species →	Biological Process	lipid catabolic process	Interproscan
GO:0016298 all species →	Molecular Function	lipase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for PFX24053.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.