Gene detail

Detailed information of PFX24054.1 in Stylophora pistillata

Genomic Location: Spis.scaffold187:270580...290285
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ARCN1

ATGGTTCTACTCGCTGCAGCAATATGTACGAAAACAGGGAAAGCCATTGTATCACGTCAGTTTGTGGAGATGACAAGATCCCGTGTGGAAGGCCTTCTTGCTGCATTTCCCAAATTGATGAATACTGGAAAGCAACACACATTCGTTGAAACCGAGAGCGTCAGATATGTCTACCAGCCCCTAGAGAAACTCTACATGCTCCTTATTACGACTAAAGCTAGTAACATCTTGGAAGACTTGGAAACATTACGACTCTTCTCCAGAGTGATTCCAGAATACTGCAAAGCAATGGAGGAATCTGAGATTGTGGAAAATGCATTTTCGCTAATCTTTGCCTTTGATGAGATTGTTGCCCTTGGCTATCGTGAAAATGTTAATCTTGCACAAATCAGAACATTCACAGAGATGGACAGTCACGAAGAGAAGGTGTTCCGTGCTGTAAGGCAGACACAAGAACGTGAAGCTAAAGAAGAGATGAAAAAGAAAGCCAAGGAATTACAAGCAGCAAGAACAGCTGCTGCTCGTGGCAAGGGTGGCAAGGGACAGTTAGCTGGATTTGGAGGTTTTGGTGGAGGAGGTCGTGATTCAAGTATCCCAGTGGCTAATGATGTCACAGTTATTGATCCCACACCTCCTAAACCATCTTATCCCACAAGAACGGCTGGCACTGGAAAGGCAATGAAATTAGGGAGCAAATCAAAGGATGTGGACAGTTTTGTGGACAAACTAAGATCAGAGGGAACAGAGGTAGTAACTTCCAAGACAAAATTATCTTCAACTGGAAAGACTCCAACAACACCATCTGTTCAAATAGGAAGTGTTCATATTAAGATTGACGAGAAGATCACACTGACAGCTGGAAGGGATGGAGGACTACAGAACATGGAGGTCAGAGGTCTTGTGCTGCTCAGAGTGTCTGATGCACAGTATGGGAAAATAAGACTCACTGTTGAAAACAATGATGACAAAGGATTCCAAATGCAGACGCATCCAAACATAGACAAGAAATTATTCAATCAAGAATCAGTAATAGGACTCAAGCAACCAAACAAACCTTTCCCACTTAATAATGACATTGGTGTATTAAAGTGGAGACTGCAGAGCACAGATGAGGGACTAATGCCATTATCAATCAACTGCTGGCCTTCGGAAAATGACGAACAGTGTGATGTTAACATAGAGTATGAGCTTCTCCAAGAAAATCTGGAGCTGAATGATATTGTAATTTCAATTCCTGTTCCTGGTGATATTGTAAGGAAAAATAAGATCCTGATTACTCTTAAGGTTTGGAGGGAGTGGGAGGTATCACCATCTTCACCTTCTCTCCCTCCAGCTACCCCTCCCTTGGAGTTTTGTATCCTCCTAGTATTGGTAGTCACTGAAATTAAAAAACAGAAATTATGCTCAGCGGACTGCATCTTCAAGCCCAGTTTCCCTCTATATCACGTGGAAACATGGCGGACGAAATCCTTAATTTTCTTAAAGAGTGCTACTAACGTAGTGGCTCTTGATGCAATCCTCAAATCTGCGTTAGAGCTGAAGTTTAAGAACATTTTATTTGAAATGGATCTCTTCAGAGTAGAGAGATTCCTGGCTGATAACGAAAATGAACCAGATCAAAGAGACGAATCTAAAAGACTGGCCGAACTCCAAAGTGCAATCGCCGATAGAAAGAGAAAGAGACTAATGTTAGCTCAGGGTGGAGGGAGCTATGAGGAATCAAACAAAATCCAATTTTCAGACTCCAAACAAATGAAATCTGATGTCCAAGAAGAGGTGAAATCAGCGAAGAAAGCGAAGAAAAAGAAAACAAAGACTGAGGAAGAGAAATCGGAGAAGGTACAAGACAAAGGGATCCCAAAGGAAAAGGGTGAAGTCAAGAATGCTTTTTCCATCGATGATTCACAGGAGATGCTTATTGAAAAGAATTCTGAGAAGATAAACTACAAAAGGATATCCAAGAAAGGCTTAAAAGAGGAAAAAGTTGAAGTTAAAAATGATATTCCCGTGGAGGATTCACAGAAGGACAGACTCTCTAAGACCACTAGAACAAAGGGAGCAAAAAAGGGCAACAACAAGACTATTTTTAATGATAAAATTATCAAAAGTGACTTTGACAATGAAGATGAGGATATTTCTCAAGAAAATGAGGACAGTAAAGAAAAAATATCAGTAGAAACACTGCAAGAAAATAATGAAGATACAGGGTTTACAGTAATTGGAGGCCAGAAGAAAAACAAAGAGTGTAAAAAAGTACAAAGAGTGTTACCTGGCTGGCTTGCAAAACCTACGATCATTAACTCTGACTTGGGCAGTAATAAGACTCCTGTTGACAAGATCCCTTTCTTAGAATCTCATATCGTCACCAAACTACAACAGCTTGGTATACATCACTTATTTCCTGTGCAGAGTGTGGTAATCCCAGCCATACTATCTCAAATGGATACAAAGAGTTTCTTGGGGAAAGGGGGTTATGCACCAGGTGATATCTGTGTCTCAGCCCCAACAGGAAGTGGCAAGACCCTTGCATATGTGATACCCGTTGTACAGATCTTGATGAAAAGGGTGGTTTGTCACTTGCGGGCATTGATCATCCTTCCTACCAAAGATCTGGCCAATCAAGTTAAACAAGTTTTTGAAATGTTCACAGAGGGTACAAATTTGAGCGTGGGCCTAGCTTCAGGATCAAATTCATTCACAAAGAATCAGGAACAGCTTGCTAACCAAGACTCTTGTGGTAGTAGCAGTCGCATTGATATTCTTGTGTGTACTCCTGGTAGATTAGTTGATCACATTTCATCAACCCCAAATTTTACACTGCATCATGTAAGATTCCTTGTGATTGATGAAGCTGATCGCATGTTGAGTCAATCATACCATGGCTGGCTTGGCAAAGTACTGAAGGCTGCCTACAACAAACAATCTCTCACAAGCAACTTTTTCAACAGTGACAGGCCTTTGTCCTGTACCCTGCAGACAATCAGGCATCCTGCTGGAGCTCAAACAGCAGCAAGTTTTGCCACCATTCAACTTCCTTTGCAAAAATTGTTGTTCTCTGCAACAATGACACACAGCCCTGAAAAGCTTGCTCCTCTCCAGCTGTATCAACCAACCTTGTTTACTGGGACAGGAAGTGTGAATCAAACAAAAACAACTGATTTGGGCAAACCAACTTCAGATGTATCAATATCTGGTCGGTTCAGTGTTCCAGAAGGACTATCAGAATACATGACAGTTTGTAACAGTGGAGAGAAGCCGCTGATGGTGTTGTACTTCTTAACACAGCTTAAATTTGAGAGAGTTTTGTGTTTTGCTTCCACACTTGAAGCTACCCATAGGTTGTATCTACTCATGAAGTTATATGGTGGCATTGAAGTAGCTGAGTATTCCTCCAGCTTGTCACCTCCACAGAGGAAAGGAATCTTGAGAGACTTCAGGCTCGGAAAACTACAGCTTCTGATCTGTTCAGATGCCATGGCGAGAGGAATGGATATACAGGATGTGTGTTACGTCATCAGCTATGACGTACCAAATTACGTCAGAACATACATACACCGTGTGGGTAGGACAGCCAGGGCAGGAAACAAAGGAACGGCCATCACACTGTTACACAGCGAAGAAGTACATCACTTTAAAGAAGTGATTCAGAAAACAGGACGTGAAAAGATCGCCAAGTATAACATCAAAGAAGACAAACTTCAGCCTATGGTTGAGAAGTATCAGGACACTTTAGAACGCTTACAAGATGCAGTTCAGACGGAAAATCAGAAAAAAACGCAACAAAAAGGGAAACAGGACGTTGTCAAATTATTAGCGGAACAGTTCATGACTAATGTGAAAAAAAGAAACCTGGAGAAAAGCTAG

Transcript

rna-Spis11349_mrna

ATGgtTCTACTCGCTGCAGCAATATGTACGAAAACAGGGAAAGCCATTGTATCACGTCAGTTTGTGGAGATGACAAGATCCCGTGTGGAAGGCCTTCTTGCTGCATTTCCCAAATTGATGAATACTGGAAAGCAACACACATTCGTTGAAACCGAGAGCGTCAGATATGTCTACCAGCCCCTAGAGAAACTCTACATGCTCCTTATTACGACTAAAGCTAGTAACATCTTGGAAGACTTGGAAACATTACGACTCTTCTCCAGAGTGATTCCAGAATACTGCAAAGCAATGGAGGAATCTGAGATTGTGGAAAATGCATTTTCGCTAATCTTTGCCTTTGATGAGATTGTTGCCCTTGGCTATCGTGAAAATGTTAATCTTGCACAAATCAGAACATTCACAGAGATGGACAGTCACGAAGAGAAGGTGTTCCGTGCTGTAAGGCAGACACAAGAACGTGAAGCTaaagaagagatgaaaaagaaagccAAGGAATTACAAGCAGCAAGAACAGCTGCTGCTCGTGGCAAGGGTGGCAAGGGACAGTTAGCTGGATTTGGAGGTTTTGGTGGAGGAGGTCGTGATTCAAGTATCCCAGTGGCTAATGATGTCACAGTTATTGATCCCACACCTCCTAAACCATCTTATCCCACAAGaacGGCTGGCACTGGAAAGGCAATGAAATTAGGGAGCAAATCAAAGGATGTGGACAGTTTTGTGGACAAACTAAGATCAGAGGGAACAGaGGTAGTAACTTCCAAGACAAAATTATCTTCAACTGGAAAGACTCCAACAACACCATCTGTTCAAATAGGAAGTGTTCATATTAAGATTGACGAGAAGATCACACTGACAGCTGGAAGGGATGGAGGACTACAGAACATGGAGGTCAGAGGTCTTGTGCTGCTCAGAGTGTCTGATGCACAGTATGGGAAAATAAGACTCACTGTTGAAAACAATGATGACAAAGGATTCCAAATGCAGACGCATCCAAACATAgacaagaaattattcaatCAAGAATCAGTAATAGGACTCAAGCAACCAAACAAACCTTTCCCACTTAATAATGACATTGGTGTATTAAAGTGGAGACTGCAGAGCACAGATGAGGGACTAATGCCATTATCAATCAACTGCTGGCCTTCGGAAAATGACGAACAGTGTGATGTTAACATAGAGTATGAGCTTCTCCAAGAAAATCTGGAGCTGAATGATATTGTAATTTCAATTCCTGTTCCtggtgatattgtaaggaaaaataagatCCTGATTACTCTTAAGGTTTGGAGGGAGTGGGAGGTATCACCATCTTCACCTTCTCTCCCTCCAGCTACCCCTCCCTTGGAGTTTTGTATCCTCCTAGTATTGGTAGtcactgaaattaaaaaaCAGAAATTATGCTCAGCGGACTGCATCTTCAAGCCCAGTTTCCCTCTATATCACGTGGaaacatggcggacgaaatCCTTAATTTTCTTAAAGAGTGCTACTAACGTAGTGGCTCTTGATGCAATCCTCAAATCTGCGTTAGAGCTGAAGtttaagaacattttatttgaaatggaTCTCTTCAGAGTAGAGAGATTCCTGGCTGATAACGAAAATGAACCAGATCAAAGAGACGAATCTAAAAGACTGGCCGAACTCCAAAGTGCAATCGCCgatagaaagagaaagagactAATGTTAGCTCAGGGTGGAGGGAGCTATGAGgaatcaaacaaaatccaaTTTTCAGACTCCAAACAAATGAAATCTGATGTCCAAGAAGAGGTGAAATCAGCGAAGaaagcgaagaaaaagaaaacaaagactgAGGAAGAGAAATCGGAGAAGGTACAAGACAAAGGGATCCCAAAGGAAAAGGGTGAAGTCAAGAATGCTTTTTCCATCGATGATTCACAGGAGATGCTTATTGAAAAGAATTCTGAGAAGATAAACTACAAAAGGATATCCAAGAAAGgcttaaaagaggaaaaagttgAAGTTAAAAATGATATTCCCGTGGAGGATTCACAGAAGGACAGACTCTCTAAGACCACTAGAACAAAGGGAGCAAAAAAGGGCAACAACAAGActatttttaatgataaaattatcaaaagtgACTTTGACAATGAAGATGAGGATATTTCTCAAGAAAATGAggacagtaaagaaaaaatatcagtaGAAACACTGCAAGAAAATAATGAAGATACAGGGTTTACAGTAATTGGAGgccagaagaaaaacaaagagtgtAAAAAAGTACAAAGAGTGTTACCTGGCTGGCTTGCAAAACCTACGATCATTAACTCTGACTTGGGCAGTAATAAGACTCCTGTTGACAAGATCCCTTTCTTAGAATCTCATATCGTCACCAAACTACAACAGCTTGGTATACATCACTTATTTCCTGTGCAGAGTGTGGTAATCCCAGCCATACTATCTCAAATGGATACAAAGAGTTTCTTGGGGAAAGGGGGTTATGCACCAGGTGATATCTGTGTCTCAGCCCCAACAGGAAGTGGCAAGACCCTTGCATATGTGATACCCGTTGTACAGATCTTGATGAAAAGGGTGGTTTGTCACTTGCGGGCATTGATCATCCTTCCTACCAAAGATCTGGCCAATCAagttaaacaagtttttgaAATGTTCACAGAGGGTACAAATTTGAGCGTGGGCCTAGCTTCAGGATCAAATTCATTCACAAAGAATCAGGAACAGCTTGCTAACCAAGAcTCTTGTGGTAGTAGCAGTCGCATTGATATTCTTGTGTGTACTCCTGGTAGATTAGTTGATCACATTTCATCAACCCCAAATTTTACACTGCATCATGTAAGATTCCTTGTGATTGATGAAGCTGATCGCATGTTGAGTCAATCATACCATGGCTGGCTTGGCAAAGTACTGAAGGCTGCCTACAACAAACAATCTCTCACAAGCAACTTTTTCAACAGTGACAGGCCTTTGTCCTGTACCCTGCAGACAATCAGGCATCCTGCTGGAGCTCAAACAGCAGCAAGTTTTGCCACCATTCAACTTCCTTTGCAAAAATTGTTGTTCTCTGCAACAATGACACACAGCCCTGAAAAGCTTGCTCCTCTCCAGCTGTATCAACCAACCTTGTTTACTGGGACAGGAAGTgtgaatcaaacaaaaacaactgatTTGGGCAAACCAACTTCAGatGTATCAATATCTGGTCGGTTCAGTGTTCCAGAAGGACTATCAGAATACATGACAGTTTGTAACAGTGGAGAGAAGCCGCTGATGGTGTTGTACTTCTTAACACAGCTTAAATTTGAGAGAGTTTTGTGTTTTGCTTCCACACTTGAAGCTACCCATAGGTTGTATCTACTCATGAAGTTATATGGTGGCATTGAAGTAGCTGAGTATTCCTCCAGCTTGTCACCTCCACAGAGGAAAGGAATCTTGAGAGACTTCAGGCTCGGAAAACTACAGCTTCTGATCTGTTCAGATGCCATGGCGAGAGGAATGGATATACAGGATGTGTGTTACGTCATCAGCTATGACGTACCAAATTACGTCAGAACATACATACACCGTGTGGGTAGGACAGCCAGGGCAGGAAACAAAGGAACGGCCATCACACTGTTACACAGCGAAGAAGTACATCACTTTAAAGAAGTGATTCAGAAAACAGGACGTGAAAAGATCGCCAAGTATAACATCAAAGAAGACAAACTTCAGCCTATGGTTGAGAAGTATCAGGACACTTTAGAACGCTTACAAGATGCAGTTCAGAcggaaaatcagaaaaaaacgCAACAAAAAGGGAAACAGGACGTTGTCAAATTATTAGCGGAACAGTTCATGActaatgtgaaaaaaagaaacctggAGAAAAGCTAGTTAACTGTTCAAAGacgattttgaaataaaacttaacatTTATCGTTTGGAATTTCTAAAGAATGATCGAAAGAATAAATCAATGTATTGCGTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00928 all species →	Adap_comp_sub	Adaptor complexes medium subunit family	Family	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF01217 all species →	Clat_adaptor_s	Clathrin adaptor complex small chain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR028565 all species →	Domain	Mu homology domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR022775 all species →	Domain	AP complex, mu/sigma subunit	Interproscan
IPR000629 all species →	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR036168 all species →	Homologous_superfamily	AP-2 complex subunit mu, C-terminal superfamily	Interproscan
IPR027059 all species →	Family	Coatomer delta subunit	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR011012 all species →	Homologous_superfamily	Longin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10121 all species →	COATOMER SUBUNIT DELTA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0006890 all species →	Biological Process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Interproscan
GO:0030126 all species →	Cellular Component	COPI vesicle coat	Interproscan
GO:0051645 all species →	Biological Process	Golgi localization	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14807	DDX51, DBP6; ATP-dependent RNA helicase DDX51/DBP6	EC:5.6.2.7	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.