Gene detail

Detailed information of PFX24086.1 in Stylophora pistillata

Genomic Location: Spis.scaffold187:417948...434765
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Clcn3

ATGGATCGAAATAATCGACAATCTTCCGATTTATCTGGGAGTTCGTTGGGTAACGACAGACTTGAAAACGTTTTAGGAAGTTTCGATGATGAAGAGTCTCCTATAGTCGAAGGTAGCAATTTGCGCTTTTCTCGAAGTGTTCAGAACGATTGTTTTCTCGAAGAGGCTGCTCTGGCACAGTACGATGATTTTAACACCATCGATTGGGTGCGTGATCGGCAGAGAGAACGCAAACGATTTCGTGAAATGCGAAGGATGAAGAGAGGGAGCTGGTGGGAGCGAATCGTTCAAGCAAATGATGCATGGGCTGGTTGGCTCGTAGTTCTTCTTGTCGGTTTATCAGCCGGAATGTGTGCCGGAATAATAGACATTGGAACTACCTGGATGACAGATTTAAAGCTTGGGTTTTGCCCCGATAATCTCTGGTTCAATCAAGAATCTTGTTGTTGGTCAGACAGTACTAATTTTGAAGGAACGGGTTGTAGTCAATGGGAGTCGTGGTCGAGCTTGTTTCATATCTCGGAGAAAGGAGCCGCAGCCTATGTTGTTAACTATATTTTCTATATTGTTGTGTCTTTATTCTTTGGTCTTCTCGCTGTTACACTTGTTCGTTGGTTTGCGCCTTACGCTTGTGGAAGTGGTATCCCCGAGATCAAGACCATTTTAAGTGGTTTCATCATTCGTGGTTACCTTGGTCGCTGGACACTTGTTATCAAGTCACTGTCCATGATGCTTGCCGTGGCTGCAGGTCTAAGCTTAGGAAAAGAGGGCCCTCTTGTTCATGTGGCAAGTTGTTGTGGGAACTTTTTCTCCTATGTGTTTACAAAATATCACAAGAATGAAGCTAAGAAAAGAGAGTTGCTGTCAGCTGCTGCAGCAGCTGGTGTTTCTGTGGCATTTGGTGCCCCCATTGGTGGTGTTCTATTCAGTTTGGAAGAGGTCAGCTATTACTTCCCAATGAAGACATTGTGGAGATCTTTCTTCTGTGCCATGATTGCTGCCTTTACACTGAAGTACATGAATCCATTTGGAACTGGTCATTTAGTGATGTTCTATGTTGAATATGACAACCCTTGGAAGTTGTTTGAACTTGTTCCATTCATATTCTTAGGTGCTCTTGGGGGATTGGTTGGTGCTTTCTTTATCAAAGCCAACTTGTGGTATTGTAAACTCAGGAAAACTTCAAAACTGGGGAGATATCCTCTAGTAGAAGTTGTACTTGTGACCCTTGTGACCGCAGTGTTAGCTTACCCTAATCCATATTCTAGGCAAAGCAGTAGTGTTCTCATCAAACATCTGTTCAGTCAGTGGGGCCCTGATGATTCGTCAGAACTATGTGACTACCAAACTGAAAGTTTGAATTCCACACTGAATGTTAATGATCCCAATTGGCCTGGAGCTGCGGCAGGGGATGGTGTTCACAAAGCCATTTGGCAGCTGATTTTAGCCATGATTTTCAAGATTATCATCACAATCTTCACATTTGGAATAAAGGTTCCGGCTGGACTGTTTATTCCAAGCATGGCAATTGGAGCTTGTATGGGAAGGGTTCTCGGTATTGGGATGGAGCAACTTGCCTTCCACAATCCACACTGGTACATGTTTGAGTCATCTTGTGGTAATTCAATAGCATCTTGTATTACACCTGGATTGTATGCAATGGTAGGAGCTGCGGCAGTTCTGGGTGGGGTCACAAAGATGACAGTTTCCTTGGTGGTGATTATGTTTGAGCTGACTGGGGGACTTGTGTACATTGTACCCCTGATGGTGGCCATCATGACAAGTAAATGGGTTGGTGATGCATTTGTGAAGGAAGGAATTTATGAGGGTCATATTCACCTCAATGGCTACCCGTTTCTGGACAACAAAGAAGAATTCACACACACAACTCTTGCAGCTGATGTTATGAGACCAAGGAAAGCAGATACGCAAGTCGGAAAACTGTCATGGTCAAGGTTTCAAGCACGCGCGCAAGAAGAGAGTAAGGCAAAGAAGTGCCTCTTTGGGCGACCAGATCACGAAGAGCTTGAAAAAGATAAGAATGAGTTGTTGAAGAAAGATTTACAAGAGATGAACAAAAAGTGGGGCTTCGATTTCGAGAAAGAGGAACCGATAGAAAACGATAGATTCCAATGGGAAAAAGTTGGGTCGACTGAAACCGAGAAAGACGAGTCTAGAGTTGGACAGAGCAGCGCTGCGGAAAAAGGGAAGGATAATGAACTTGCTAGAAAGCATTCAGCCGATAAATACTCACAGCTTCCTCAAACTCCGCCGAAAAATGGCAAATAA

Transcript

rna-Spis11357_mrna

ATGGATCGAAATAATCGACAATCTTCCGATTTATCTGGGAGTTCGTTGGGTAACGACAGACTTGAAAACGTTTTAGGAAGTTTCGATGATGAAGAGTCTCCTATAGTCGAAGGTAGCAATTTGCGCTTTTCTCGAAGTGTTCAGAACGATTGTTTTCTCGAAGAGGCTGCTCTGGCACAGTACGATGATTTTAACACCATCGATTGGGTGCGTGATCGGCAGAGAGAACGCAAACGATTTCGTGAAATGCGAAGGATGAAGAGAGGGAGCTGGTGGGAGCGAATCGTTCAAGCAAATGATGCATGGGCTGGTTGGCTCGTAGTTCTTCTTGTCGGTTTATCAGCCGGAATGTGTGCCGGAATAATAGACATTGGAACTACCTGGATGACAGATTTAAAGCTTGGGTTTTGCCCCGATAATCTCTGGTTCAATCAAGAATCTTGTTGTTGGTCAGACAGTACTAATTTTGAAGGAACGGGTTGTAGTCAATGGGAGTCGTGGTCGAGCTTGTTTCATATCTCGGAGAAAGGAGCCGCAGCCTATGTTGTTAACTATATTTTCTATATTGTTGTGTCTTTATTCTTTGGTCTTCTCGCTGTTACACTTGTTCGTTGGTTTGCGCCTTACGCTTGTGGAAGTGGTATCCCCGAGATCAAGACCATTTTAAGTGGTTTCATCATTCGTGGTTACCTTGGTCGCTGGACACTTGTTATCAAGTCACTGTCCATGATGCTTGCCGTGGCTGCAGGTCTAAGCTTAGGAAAAGAGGGCCCTCTTGTTCATGTGGCAAGTTGTTGTGGGAACTTTTTCTCCTATGTGTTTACAAAATATCACAAGAATGAAGCTAAGAAAAGAGAGTTGCTGTCAGCTGCTGCAGCAGCTGGTGTTTCTGTGGCATTTGGTGCCCCCATTGGTGGTGTTCTATTCAGTTTGGAAGAGGTCAGCTATTACTTCCCAATGAAGACATTGTGGAGATCTTTCTTCTGTGCCATGATTGCTGCCTTTACACTGAAGTACATGAATCCATTTGGAACTGGTCATTTAGTGATGTTCTATGTTGAATATGACAACCCTTGGAAGTTGTTTGAACTTGTTCCATTCATATTCTTAGGTGCTCTTGGGGGATTGGTTGGTGCTTTCTTTATCAAAGCCAACTTGTGGTATTGTAAACTcaggaaaacttcaaaactgGGGAGATATCCTCTAGTAGAAGTTGTACTTGTGACCCTTGTGACCGCAGTGTTAGCTTACCCTAATCCATATTCTAGGCAAAGCAGTAGTGTTCTCATCAAACATCTGTTCAGTCAGTGGGGCCCTGATGATTCGTCAGAACTATGTGACTACCAAACTGAAAGTTTGAATTCCACACTGAATGTTAATGATCCCAATTGGCCTGGAGCTGCGGCAGGGGATGGTGTTCACAAAGCCATTTGGCAGCTGATTTTAGCCATGATTTTCAAGATTATCATCACAATCTTCACATTTGGAATAAAGGTTCCGGCTGGACTGTTTATTCCAAGCATGGCAATTGGAGCTTGTATGGGAAGGGTTCTCGGTATTGGGATGGAGCAACTTGCCTTCCACAATCCACACTGGTACATGTTTGAGTCATCTTGTGGTAATTCAATAGCATCTTGTATTACACCTGGATTGTATGCAATGGTAGGAGCTGCGGCAGTTCTGGGTGGGGTCACAAAGATGACAGTTTCCTTGGTGGTGATTATGTTTGAGCTGACTGGGGGACTTGTGTACATTGTACCCCTGATGGTGGCCATCATGACAAGTAAATGGGTTGGTGATGCATTTGTGAAGGAAGGAATTTATGAGGGTCATATTCACCTCAATGGCTACCCGTTTCTGGACAACAAAGAAGAATTCACACACACAACTCTTGCAGCTGATGTTATGAGACCAAGGAAAGCAGATACGCAAGTCGGAAAACTGTCATGGTCAAGGTTTCAAGCACGCGCGCAAGAAGAGAGTAAGGCAAAGAAGTGCCTCTTTGGGCGACCAGATCACGAAGAGCTTGAAAAAGATAAGAATGAGTTGTTGAAGAAAGATTTACAAGAGATGAACAAAAAGTGGGGCTTCGATTTCGAGAAAGAGGAACCGATAGAAAACGATAGATTCCAATGGGAAAAAGTTGGGTCGACTGAAACCGAGAAAGACGAGTCTAGAGTTGGACAGAGCAGCGCTGCGGAAAAAGGGAAGGATAATGAACTTGCTAGAAAGCATTCAGCCGATAAATACTCACAGCTTCCTCAAACTCCGCCGAAAAATGGCAAATAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02234 all species →	CDI	Cyclin-dependent kinase inhibitor	Family	Interproscan
PF00654 all species →	Voltage_CLC	Voltage gated chloride channel	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001807 all species →	Family	Chloride channel, voltage gated	Interproscan
IPR014743 all species →	Homologous_superfamily	Chloride channel, core	Interproscan
IPR044898 all species →	Homologous_superfamily	Cyclin-dependent kinase inhibitor domain superfamily	Interproscan
IPR003175 all species →	Domain	Cyclin-dependent kinase inhibitor domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45711 all species →	CHLORIDE CHANNEL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005247 all species →	Molecular Function	voltage-gated chloride channel activity	Interproscan
GO:0006821 all species →	Biological Process	chloride transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015299 all species →	Molecular Function	obsolete solute:proton antiporter activity	Interproscan
GO:0004861 all species →	Molecular Function	cyclin-dependent protein serine/threonine kinase inhibitor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0051726 all species →	Biological Process	regulation of cell cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05012	CLCN3_4_5; chloride channel 3/4/5	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.