Gene detail

Detailed information of PFX24127.1 in Stylophora pistillata

Genomic Location: Spis.scaffold185:264545...290586
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

CCDC62

ATGGAGCGATTTGGAGGGTCACTGCCCGTAAAAGGATACAGCGGTGAATTGGCTGGAAAAAAACGAGTTCAACTCCCAGCAGATCTTGGAAAAGGTTACACCTCTTATGACTCAAGTAATTTATTTCACAGCACCCCCAAAACAAAGCCCTTATCGTCGTCATATTCAACAACATCACCAAGTGGCTACAAGACCAGAACATCCAGTACAAGTTATCAGACAGGTGTAAGCCCATCTCGGTCACAGCGCAGTAAATCTCCAACCCGCAGCACAAGCCCTGTCCGCCGACCAGTGAGTCCAAATTTGCAAAGAGCCACAAGTCCAAGACTACACAACAGGTCTTTGTCTCCTAATAGTAAACAGCTCTCTGATGTTGATAGTGACACGATACAAAGGCAGAGGCGAGAACTTCAGTTACTCATTGGAGAACTCAAAGATAGAGACAGAGAACTGAATGATATGGTTCAAGCTCATCAAAAACAGATAGTGGCTTGGGAGGAGGACCGACAAAGGGTGTTTGCTCTTGAGAAGCGATCCTCCAGGCTTGAAAGTGAACTCAAAAGTAGAAGTGAACAAATGAAGGCATTGCAAGCAAGATTAAAAGCCTCTGAAACAGAGGAAAAGAACAAAGGCAAAGAACTTGAAGATACTCAGCTCCAACTTCAACAAGTTTCAGAACATGCCAATACGTCACTTCATCAAGTGCAGGAACTTGAGGAAAAGAACAGTGCTTTAACGTCGTCAATGCGGGAGTTATCCAACAATATAGGACAGCTTCAAGCTAGGGAACAGGAGCTTTTAACAAAACTAAAACTGAAGGATAATGACATAATGGAAGCAAATGTGAGCTTAGGAGAACTACAACAAAAGATAAAACGACTCGAAGGATTATGTCAGGAGCTAAGGAAAAATGAAAGCTCACTGAGGACAGAAAAAGACCAGTGGAGAGATCAAGCCACGGCTAACAAACATGAAGTAGAAAAACTACGAGTGGATATCAGTAAACAGTTTAGTGATGCAGACGAAGTTCAAGCTGAGCTGGCAAAGACCAAGCAAGAAATTTTAGTCTTGCAGAAGGAACTTTTCCTGGCAGGAGAAAGAGAGAAGAGGAAAGATCAACTGCTTGATTTACAAAAGTCAAAGCAAGAGAGAACGGACTCAGAGTTACAAAACCTACGACAGATTTGTGAGAGACAACAACGTGATATTTCTTACATGCAGCTTCAGTTACAAAGTTCTCACGATATGCTGTCCAAACATGTCACGGAACCTGATAAGATGTCAGAATTGGAGTCCAATCCCCCGGATGAAGAGAAGAAACCTCTAAACAGCTTTTACGATGCGACGAGTTTTAATCTCAATGGAGACTACTTTGACAATCAGGATCAAGCGTCCACCAGGTCAACGGACTTTGATGGTCCAGTGACATCCAAAGGCATTGATGAGGACCTCGCAGCTTATATTCCAGGCGGTGGTGGAGTGTCCTCCCTTTCCATGCACGCTACAGCCGGAAGTGACTTGGCTGACGACTTCGATAACCTTTCCCAAGATCCACTTCAACCTCCAATAACTTCAGAAAGAGGCTTCGCAAGTTCAAATGTTGACACCTTCCTTCCTCCGAGAAACCCATCTTACTTCAGTACACCCAACGCAAGCACCGACATTTACCCACCATTAGGTAACCTTTCTATCACAGGCGTTCGACTAGAGGACCACAGCACCTTGTTATCCTTCTCGCCTGGGAGACCGGTGGAAATGAATTCGGGGACAACTACGAGACCTGGGGACACTTATTCCCCTTTCTCAGCTGGGGTATCTCTGACGAAGACCTCTCCTCCTAAGGCGGAGGGGGACGCTTCACCGACCAGTAAACTACATCGTCTGCTGGCGGAGTCTCGACAAATGGTTCAAAACCTCGAACAATCCTCCACATTCTCTCTGACCGGAAGTCCAAATCAGGTAATGAGAATGCTCAAAGTTATCAGGACTCCACGGTTCCCACAAGTGAGCAGTATACACCGCCGCAAAGACATATGGGAAGTCCACTACATTCGCGTCCAATACCAACTTCCACTGAATGAAAAACCTCGACCCAAACATGATCTTGTAAACACACCTGTCAAGCCTAGTGGAAATTGGAATCCTGTTGAGGGCACCACACAAGGGGATCCACTGGCAATGATTCTGTACGCCATCAGTCTCCAGCGACTCATCACACAGCTACAAGTTTCTAGCGCAACTAAGCAATGCTGGTTCGCCGACGATGCTGCTGGAAGTGGTTCACTTCTTGAGCGTGCAGTCGATGTATTGCGAGACGCTTCAATATGGCTCCGATCTCTGCCGAGGGGAGATTTTACCGAGAAAGATGCTCCAACCAAAAAACCTGACGCCATCTGGTCCAAAACTAAAGAACCCCAGATCGTCGTTGAAACAGAGTCGTTTGAAAAAAAGAAACCAAAAGAAAAACACGACGAGTTCGACTTCGACAAGGCGGGAGAAAAGCTACGAGAGAAGCTTGACTCGGTTATAGCTCTTCCAAGCGAACTGAAGGAAAAATTCCAAGCGAAATTTCTCCGCAACACCGCAGTTAAAGTTGAGATTTCCGAGAAAGAAGAGACCAGATCCGGGAAGGAAACCGACTTTGATCGAGAGTATGACATAATTGAGTTGCGAGAAAATATATTCGTCATCGGAGGGGCGAGTGAGGGCAGCGAAAGCGAGCCCTCTTCAGCTGTTGGAGTCTTCAATTGCACCGAAAGAACATGGAGGGAAATTGCGCCTTTGCCTGTGAAGACAACTGCTTGCTATGCTACGGAAGTAACAGCTATTCCTGCTCTTGTGGTAGCGGGTGGGTTTGGGGGATGGAAGGCTCTTAACACGGTACAGATGTATGACTGGGTTACCAAGGAATGGAGCGTCCTCAAACCGATGAGAAAACGACGATGGGGTTGTTATGCGACAGGGACAGAGCACGGAATTCTCGTTGCTGGAGGTTGCGATCAGGGCACTGTTCTAAACAGTGTCGAGCTCTATAACATCAAGAGGAGAGAGTGGTTTACACTTCCAGAGATGCAGGAGCCACGCTGCAACTTTGGTGGCGGAATCATCGACCGGAAGCTGCTTGTGGTCGGAGGCGGATCAGGCTTCTACTTCAACACCGCAAAGAATTCTGCTGAAATATTCGACGGACAGAAAGGAAAATGGACGAAGCTACCACCGATGAAGCGAAAGCGCTACGGCTGTGCTGCTGTGGCATGGAAGAAAAAGCTTTTTGTGGTTGGTGGTTGTGATAAAAATGGATCTGATGTGTTAGAAGTTGAGGCGTTTGATTTAGAGGGACATGTGTGGCTAAACTTCCCTCCGATACCAGTGGGATATTCCTTGTGCCGGGCTAAAATTGTCCAAAACATGCTTGTGGCGTTTGGCGCCGATGGAGGCGAAAATACTGCATATGCCTTTGATTTTGAACTCAACAAATGGGAGAAGTATATCGAGTTACCTCGCGGACGAAGTGCTTTTGCTATTGGAGTTGTTGGCGTTTAA

Transcript

rna-Spis11285_mrna

ATGGAGCGATTTGGAGGGTCACTGCCCGTAAAAGGATACAGCGGTGAATTGGCTGGAAAAAAACGAGTTCAACTCCCAGCAGATCTTGGAAAAGGTTACACCTCTTATGACTCAAGTAATTTATTTCACAGCACCCCCAAAACAAAGCCCTTATCGTCGTCATATTCAACAACATCACCAAGTGGCTACAAGACCAGAACATCCAGTACAAGTTATCAGACAGGTGTAAGCCCATCTCGGTCACAGCGCAGTAAATCTCCAACCCGCAGCACAAGCCCTGTCCGCCGACCAGTGAGTCCAAATTTGCAAAGAGCCACAAGTCCAAGACTACACAACAGGTCTTTGTCTCCTAATAGTAAACAGCTCTCTGATGTTGATAGTGACACGATACAAAGGCAGAGGCGAGAACTTCAGTTACTCATTGGAGAACTCAAAGATAGAGACAGAGAACTGAATGATATGGTTCAAGCTCATCAAAAACAGATAGTGGCTTGGGAGGAGGACCGACAAAGGGTGTTTGCTCTTGAGAAGCGATCCTCCAGGCTTGAAAGTGAACTCAAAAGTAGAAGTGAACAAATGAAGGCATTGCAAgcaagATTAAAAGCCTCTGAAACAGAGGAAAAGAACAAAGGCAAAGAACTTGAAGATACTCAGCTCCAACTTCAACAAGTTTCAGAACATGCCAATACGTCACTTCATCAAGTGCAGGAACTTGAGGAAAAGAACAGTGCTTTAACGTCGTCAATGCGGGAGTTATCCAACAATATAGGACAGCTTCAAGCTAGGGAACAGGAGCTTTtaacaaaactaaaactgaaGGATAATGACATAATGGAAGCAAATGTGAGCTTAGGAGAACTACAACAAAAGATAAAACGACTCGAAGGATTATGTCAGGAGCTAAGGAAAAATGAAAGCTCACTGAGGACAGAAAAAGACCAGTGGAGAGATCAAGCCACGGCTAACAAACATGAAGTAGAAAAACTACGAGTGGATATCAGTAAACAGTTTAGTGATGCAGACGAAGTTCAAGCTGAGCTGGCAAAGACCAAGCAAGAAATTTTAGTCTTGCAGAAGGAACTTTTCCTGGCAGgagaaagagagaagaggAAAGATCAACTGCTTGATTTACAAAAGTCAAAGCAAGAGAGAACGGACTCAGAGTTACAAAACCTACGACAGATTTGTGAGAGACAACAACGTGATATTTCTTACATGCAGCTTCAGTTACAAAGTTCTCACGATATGCTGTCCAAACATGTCACGGAACCTGATAAGATGTCAGAATTGGAGTCCAATCCCCCGGATGAAGAGAAGAAACCTCTAAACAGCTTTTACGATGCGACGAGTTTTAATCTCAATGGAGACTACTTTGACAATCAGGATCAAGCGTCCACCAGGTCAACGGACTTTGATGGTCCAGTGACATCCAAAGGCATTGATGAGGACCTCGCAGCTTATATTCCAGGCGGTGGTGGAGTGTCCTCCCTTTCCATGCACGCTACAGCCGGAAGTGACTTGGCTGACGACTTCGATAACCTTTCCCAAGATCCACTTCAACCTCCAATAACTTCAGAAAGAGGCTTCGCAAGTTCAAATGTTGACACCTTCCTTCCTCCGAGAAACCCATCTTACTTCAGTACACCCAACGCAAGCACCGACATTTACCCACCATTAGGTAACCTTTCTATCACAGGCGTTCGACTAGAGGACCACAGCACCTTGTTATCCTTCTCGCCTGGGAGACCGGTGGAAATGAATTCGGGGACAACTACGAGACCTGGGGACACTTATTCCCCTTTCTCAGCTGGGGTATCTCTGACGAAGACCTCTCCTCCTAAGGCGGAGGGGGACGCTTCACCGACCAGTAAACTACATCGTCTGCTGGCGGAGTCTCGACAAATGGTTCAAAACCTCGAACAATCCTCCACATTCTCTCTGACCGGAAGTCCAAATCAGgtaatgagaatgctcaaagttatcagGACTCCACGGTTCCCACAAGTGAGCAGTATACACCGCCGCAAAGACATATGGGAAGTCCACTACATTCGCGTCCAATACCAACTTCCACTGAATGAAAAACCTCGACCCAAACATGATCTTGTAAACACACCTGTCAAGCCTAGTGGAAATTGGAATCCTGTTGAGGGCACCACACAAGGGGATCCACTGGCAATGATTCTGTACGCCATCAGTCTCCAGCGACTCATCACACAGCTACAAGTTTCTAGCGCAACTAAGCAATGCTGGTTCGCCGACGATGCTGCTGGAAGTGGTTCACTTCTTGAGCGTGCAGTCGATGTATTGCGAGACGCTTCAATATGGCTCCGATCTCTGCCGAGGGGAGATTTTACCGAGAAAGATGCTCCAACCAAAAAACCTGACGCCATCTGGTCCAAAACTAAAGAACCCCAGATCGTCGTTGAAACAGAGtcgtttgaaaaaaagaaaccaaaagaaaaacacgACGAGTTCGACTTCGACAAGGCGGGAGAAAAGCTACGAGAGAAGCTTGACTCGGTTATAGCTCTTCCAAGCGAACTGAAGGAAAAATTCCAAGCGAAATTTCTCCGCAACACCGCAGTTAAAGTTGAGATTTCCGAGAAAGAAGAGACCAGATCCGGGAAGGAAACCGACTTTGATCGAGAGTATGACATAATTGAGTTGCGAGAAAATATATTCGTCATCGGAGGGGCGAGTGAGGGCAGCGAAAGCGAGCCCTCTTCAGCTGTTGGAGTCTTCAATTGCACCGAAAGAACATGGAGGGAAATTGCGCCTTTGCCTGTGAAGACAACTGCTTGCTATGCTACGGAAGTAACAGCTATTCCTGCTCTTGTGGTAGCGGGTGGGTTTGGGGGATGGAAGGCTCTTAACACGGTACAGATGTATGACTGGGTTACCAAGGAATGGAGCGTCCTCAAACCGATGAGAAAACGACGATGGGGTTGTTATGCGACAGGGACAGAGCACGGAATTCTCGTTGCTGGAGGTTGCGATCAGGGCACTGTTCTAAACAGTGTCGAgctctataacatcaagaggAGAGAGTGGTTTACACTTCCAGAGATGCAGGAGCCACGCTGCAACTTTGGTGGCGGAATCATCGACCGGAAGCTGCTTGTGGTCGGAGGCGGATCAGGCTTCTACTTCAACACCGCAAAGAATTCTGCTGAAATATTCGACGGACAGAAAGGAAAATGGACGAAGCTACCACCGATGAAGCGAAAGCGCTACGGCTGTGCTGCTGTGGCATGgaagaaaaagctttttgtGGTTGGTGGTTGTGATAAAAATGGATCTGATGTGTTAGAAGTTGAGGCGTTTGATTTAGAGGGACATGTGTGGCTAAACTTCCCTCCGATACCAGTGGGATATTCCTTGTGCCGGGCTAAAATTGTCCAAAACATGCTTGTGGCGTTTGGCGCCGATGGAGGCGAAAATACTGCATATGCCTTTGATTTTGAACTCAACAAATGGGAGAAGTATATCGAGTTACCTCGCGGACGAAGTGCTTTTGCTATTGGAGTTGTTGGCGTTTAA

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003414 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01344 all species →	Kelch_1	Kelch motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006652 all species →	Repeat	Kelch repeat type 1	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46344 all species →	OS02G0202900 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15046	IVNS1ABP, NS1BP; influenza virus NS1A-binding protein	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.