Gene detail

Detailed information of PFX24133.1 in Stylophora pistillata

Genomic Location: Spis.scaffold185:339893...361539
NR annotation: no NCBI-NR hit recorded
Species abbreviation SPIST · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

MDC1

ATGGATTTCGACCAGACACAAGTAATAGACGATTTTGGTGTGGAGGAGGAAGTGAGTGAGGAAGAGAATAACGGTCGATCCAAGAAAATCGAGGTTGCACATCTTAAAGTTTTTTCTCAACAAGGTTTTAAAGAATCAGTCTTTCCAGTATTCAAAGGTGATAATTTTATAGGGAGAGATGGCAAGTGTAATATAACTATCCCTATAAAGGCCTTGTCAAAGAAACATGCCTGTATTGAAGTGCAAAGAGATCTTCATCTTCTTTATGACTGTAAGAGTAAAAATAGGACAAGGAAAGGAAAGTCTCTGCTAAAGCCCATGGTACGTTACGAGCTTAAACATGGTGATATGTTGACTTTTGGTGATGTGACTTGTCAGTACTTGGTAGGCATGGAAGAGGAAGAGGAAGATGGGGATGAAACTGGTTCTGAAACAGGTTCAGAATCCATGTTAATGGATGTGAATGTTGACGAAGAACTGAAGAAGACTGATAAGTCAATTGTAAGTGAGGATGTTAGTTTGTCAAGTACAATTGATGAGCATGTTAAAGGTGCTATCCCAAGGGAATCATTGTTGCAGGCAACACCAGGCCACAAAACAAAAAAACCATCCAAGGATGATGAAGATGCATATGCTGCAGACACAGATTCTGACACAGATGAGGAGCGACCTCTTGTGACAACAGCAGTGCCAACTATAATGTTTAGCTCTGAAGACGAAAAAGAGATACCAAATGATCAGAGGGCCTCAAGTGAGTTATTAAGTGTCCCAATTAAACAAGACACTAGCATGGAAGGGCAGACTCTAGCATTTGGACTTGGGAGCCCGACTAACGTGTTTCTGAGTAGAGATTCAACAGGATCTTCAGGATCTCACTCGGCTCAAACAGGAAGCATTCCACCAACTCTGAAGATTAGCTCTGAATCTGATTCGCTCTCAGATGTTAGCCCATTCAGGCATCCTGGAGCTAGGGGCTCTGTCACCCAACCACCATGTGGGCCTACACTGTTATATGGCTCTGAATCTGATGATGGGAGCCCAATTAAAAGACCAAGGCACCCAACAGTAAGGGTTGCAGACAAGGGCCCATCTTGTGAGCCAACACTTTTGTATGGTTCAGAATCAGATGGATCTCCAAAAAAGAAACCCAGACTACCAATGGCATCAAATGAACCGACTTTGTTGTATGAGTCTGACTCTGATGAAAGCAATGATAAGGCAGCCAAAAGATTGCGTGCATTGGGTGACAGCCATCAGGGAAATCAGGATCAAACATTGTTATACAGTGATATATCTGAAGGGAAACTGCCAAGTATTCCAGGAAAAAGTTCAGCAGATGGAGAGAACAAAGATAGCACTGATGGTTCGACAAAAGAAAGGCCAAACACCGAGGAAGAAATGGGGGTGGTTGAGGATACTGATGCTACGCTACCATACTGTAGAGCTGAAATGAGTTCAACTGATGATGAGGGTGAATCAGAAGGTGTTAGAACTGCTAAGAGGACCAGTGTTGATGAAACACCAGCTCCTATACTGCGAACTTTGGCTTGCAACACAAAAGAAATAGAAGAGGATTTGACAGATGATGAACAACACAATAGAGATGCTGATGATTATGGAGCAGATGTTGCCACTCAAGCCTATGCTGTTCAAAGTGACTCTGAACTTGAAATTGAATCTGTTTCAACTAGGGATGAGGCAGTGGCAAGAGATCTGAACCAGGTGGCTAATCCTTCTGATCTTGAGGCAACACAAGCGTATTGCATAGAAGAAGGAGAGGATTCTGACAGTTCAGATTCACAGCCACTTCCAATTGGCATTGCTAAAACAGCAGCTACTGATGACATTCAAGCAACCTTAGCTTATGGCATTGGAGAACCAGAAAGGGTAAGTGATTCAGAGAGGGTTGATAACAATGACGGTGATCACAAGAGAGGTCAGGCACAAGCACTTGTGTATGATGACTTACAAGCCACCCTGGCATATGTGATTGGAGGTGGTGATGATGAAGAAGGTTGTACAGAGACAGATGGAGAGCAGCCTTCTGACCTTGATGCTGGGGTCAGCAGAGGTGATGATGTCCAAGCTACTACTGCATATGGGCTGGAAGCAACTCAAGCATATGGAGCTGAAGAAATCGACGAGGAGGAGACTGCTGTTAAGAACAGAGATGACATAGGTGGATATCAAGGTAGAGGTACTGGTCCTGACGCAAATGCAGCAACACTTGCATATGATTTTGGTTCAACTCAGCCTTATTGTGGGAATGACAATGGTGCAACTGAGGATGACAAGGGAGACAATGCTTTTGAAGAGCATATTACTAAAATGGAGAATCTTGCCACTTTAGCTTATGGGCTGGAAGAAACCCAAGCTTATGCTTTTGATAATAATGATTCAGAGTCATCTCACAATGACATGATTGAAGCTACCCAAGCATATGGTATTGATGGTCCATCTGCAGAGGAGACAGGGCCACTAGCACAGTTGTATGCAGCATCTACTGTTCAGGGTGGGGTGACAGGCATAGATGAAAATAAAAATGGTGTATCAGCTGTTAGTGAAGTGGATATAAGTAAACCTTCCTCAAGCTCTGCTGTTGATGTAGTGGATGACTCTCAAGACCGTGAAGATGTAATGCCACGGCGATCACGTTCTACAAGGGGAAGGAAAAAGCCAGTTATTGAAGACTCTCAAGAAGTGGGATCAGCTGAAAATTATGCAGTGTCTGTGGTAGAAATATCAAATAATGACAAAAGAGAGGAAACTAAAGTGGAAAGTACACCAGGCAGTATTTTAAATAGAAATGGTAAAAATTCTCGAGTGACTCTTTCCAGCAGAAAGGGAAGAAGAGGGGCAATGAGGGTAACAATTGACTCTGGAATGCCAGATGAGGATGAAGGTAAAGAAACATTGTCAAGAGGAGGACAGAGTGGAACAAAGGAGACAAATGCATCTGAGAGTCAAGACAAAGAGACTTCTAAAGTGCCAGCTTCAACAGGGAGAAAAAGAAGAAGACAAGCTGGGAAAGGAAAATTTATTGAAGAGATGGAAGGAACAACCATAAGAAAATCAAGAAGAGGACAAAAAGGAAAGGGAGCACAAATGGAAGCCACATTTCTGCCAGAAACACCTCCTATGCCATCCACAGACACTACTGCTAAAGAGATAAGAGAGAGTCCACCAGATTCATCAGCTGAAGCTGTTCCAACAAGAGGAAAAGGGAAAGGAAGAGGAAAGGGAAGAGGAAGGAAAAATGAACAGTTGGTGGAGGAATCAGTGGCAAGGGAATCCATTGGTTCAGAGATATCTACCATCTCTAATGAACCAGAGCCCCCAGAAACTGTGAGTACACCTGCCAGAGGGAAGGGTCGAGGCAAAGGCAGAGGAATCAAAGCTCAGCCAAAGATAGGCATGGATCATGAATTAGAAGCATCTGCAAGTACTTCTCCACAAAAAACAAGTGAATCCATTGGTTCAGAGATATCTACCATCTCTAGTGAACCAGAGCCCCCAGAAACTGTAAGTACACCTGCCAGAGGGAAGGGTCGAGGCAAAGGCAGAGGAATCAAAGCTCAGCCAAAGATAGGCATGGATCATGAATCAGGAGCATCTGCAAATACTTCTCCACAAACAGAGACCCCCACTGTTAATGTCAATGAGTTGCAGCCATCAGAATCACCTGCCAGTGTCTCAACTTCAAAAAGAAAGAGTAGAGGCAGGAAGAGAATACAACCTACAGCAGCTGAATCAGAGGCTTTGGTGTCATCAGAAGGTACAGAATATTCTGAGACTATTGCAGACTCAGAGGAAAGCTCAACAGCTGGAAGCAGTCAGCAAAGTTGCAGAGTGAGACCAAGGAAGCAACAACCAGAGGACTCTGAGTCAGTGGAGATGGTGGAAACACCAGCAAAGAGAGGGAGGCGTGGAAAGGAGCCTTCTGTGAACCGAAGCCCATCCTTACAGAGGGGAAGGTCTTCTACTGAAAATAGTCCAAGGATAATTTTCACAGGCCTTTATGATAAACAGGGTGAAAAAGTTGTGATAAGCTTAGGAGGTCAGCTGGTGGATAACATTCACAACTGCACTCATCTGGTTACTGATAAGGTACGGCGCACGGTCAAGTTCTTATGTGGTCTTGCCGGTGGGCAGATCATTGTTCTTCCTTCATGGCTAGAAGCTTGTAAAAAGGCAAAGAGTTTTGTAGACACATCACCATTCTTAGTTAAGGATAAAGATGCAGAGAAGCAATATAATTTTGATCTTCAAAGATCTCATGAAGTTGCACTCACTAAGGGTCTTTTAGAGGGTTACAAGGTGCATGTAACAAAGAAAGTTAAACCAGAACCATCACAGATGAAAGACATAATTCAGAGTGCCAAAGGAGAGTTCTTGACCAGTATGCCAAGAAGTAAAGAGGACAGAGTTTTTGTGATCTCTTGTAACGATGACAGAAGTGTTTGTAGAAAACCAATGGAAGCTGGCATCCCTGTGGTCAGTGCTGAAGTTCTTCTCACTGGAGTATTGCAACAAGAGCTTAATCTTGAAGAATACAAATTATTTGCTGAGGAAATGTCTGATACAACTCAGGAGACAAGCAGTTTAAGTGGACAAAACAAAAGAAGGAATGAAACATCAGAAGGAGGTGGTGCAACATCATCATCCTCAACACCAGGGGCAAAGAACTCAGGGTCCAAAAGAAGAAAGAGATGA

Transcript

rna-Spis11289_mrna

TTCTCCATGGTAACTCTAGTTTGGATAAAAGTGTGATCAAGATTGCCTGAGGGATCCGCAAGCTTGAGTCTTGACGCGATACTTTGTAATGGATTTCGACCAGACACAAGTAATAGACGATTTTGGTGTGGAGGAGGAAGTGAGTGAGGAAGAGAATAACGGTCGATCCAAGAAAATCGAGGTTGCACATCTTAAAGTTTTTTCTCAACAAGGTTTTAAAGAATCAGTCTTTCCAGTATTCAAAGgtgaTAATTTTATAGGGAGAGATGGCAAGTGTAATATAACTATCCCTATAAAGGCCTTGTCAAAGAAACATGCCTGTATTGAAGTGCAAAGagatcttcatcttctttatgactGTAAGAGTAAAAATAGGACAAGGAAAGGAAAGTCTCTGCTAAAGCCCATGGTACGTTACGAGCTTAAACATGGTGATATGTTGACTTTTGGTGATGTGACTTGTCAGTACTTGGTAGGCATGGAAGAGGAAGAGGAAGATGGGGATGAAACTGGTTCTGAAACAGGTTCAGAATCCATGTTAATGGATGTGAATGTTGACGAAGAACTGAAGAAGACTGATAAGTCAATTGTAAGTGAGGATGTTAGTTTGTCAAGTACAATTGATGAGCATGTTAAAGGTGCTATCCCAAGGGAATCATTGTTGCAGGCAACACCAGgccacaaaacaaaaaaaccatcCAAGGATGATGAAGATGCATATGCTGCAGACACAGATTCTGACACAGATGAGGAGCGACCTCTTGTGACAACAGCAGTGCCAACTATAATGTTTAGCTCTGAAGACGAAAAAGAGATACCAAATGATCAGAGGGCCTCAAGTGAGTTATTAAGTGTCCCAATTAAACAAGACACTAGCATGGAAGGGCAGACTCTAGCATTTGGACTTGGGAGCCCGACTAACGTGTTTCTGAGTAGAGATTCAACAGGATCTTCAGGATCTCACTCGGCTCAAACAGGAAGCATTCCACCAACTCTGAAGATTAGCTCTGAATCTGATTCGCTCTCAGATGTTAGCCCATTCAGGCATCCTGGAGCTAGGGGCTCTGTCACCCAACCACCATGTGGGCCTACACTGTTATATGGCTCTGAATCTGATGATGGGAGCccaattaaaagaccaaggcACCCAACAGTAAGGGTTGCAGACAAGGGCCCATCTTGTGAGCCAACACTTTTGTATGGTTCAGAATCAGATGGATCTCCAAAAAAGAAACCCAGACTACCAATGGCATCAAATGAACCGACTTTGTTGTATGAGTCTGACTCTGATGAAAGCAATGATAAGGCAGCCAAAAGATTGCGTGCATTGGGTGACAGCCATCAGGGAAATCAGGATCAAACATTGTTATACAGTGATATATCTGAAGGGAAACTGCCAAGTATTCCAGGAAAAAGTTCAGCAGATGGAGAGAACAAAGATAGCACTGATGGTTCGACAAAAGAAAGGCCAAACACCGAGGAAGAAATGGGGGTGGTTGAGGATACTGATGCTACGCTACCATACTGTAGAGCTGAAATGAGTTCAACTGATGATGAGGGTGAATCAGAAGGTGTTAGAACTGCTAAGAGGACCAGTGTTGATGAAACACCAGCTCCTATACTGCGAACTTTGGCTTGCAACacaaaagaaatagaagaggATTTGACAGATGATGAACAACACAATAGAGATGCTGATGATTATGGAGCAGATGTTGCCACTCAAGCCTATGCTGTTCAAAGTGACTCTGAACTTGAAATTGAATCTGTTTCAACTAGGGATGAGGCAGTGGCAAGAGATCTGAACCAGGTGGCTAATCCTTCTGATCTTGAGGCAACACAAGCGTATTGCATAGAAGAAGGAGAGGATTCTGACAGTTCAGATTCACAGCCACTTCCAATTGGCATTGCTAAAACAGCAGCTACTGATGACATTCAAGCAACCTTAGCTTATGGCATTGGAGAACCAGAAAGGGTAAGTGATTCAGAGAGGGTTGATAACAATGACGGTGATCACAAGAGAGGTCAGGCACAAGCACTTGTGTATGATGACTTACAAGCCACCCTGGCATATGTGATTGGAGGTGGTGATGATGAAGAAGGTTGTACAGAGACAGATGGAGAGCAGCCTTCTGACCTTGATGCTGGGGTCAGCAGAGGTGATGATGTCCAAGCTACTACTGCATATGGGCTGGAAGCAACTCAAGCATATGGAGCTGAAGAAATCGACGAGGAGGAGACTGCTGTTAAGAACAGAGATGACATAGGTGGATATCAAGGTAGAGGTACTGGTCCTGACGCAAATGCAGCAACACTTGCATATGATTTTGGTTCAACTCAGCCTTATTGTGGGAATGACAATGGTGCAACTGAGGATGACAAGGGAGACAATGCTTTTGAAGAGCATATTACTAAAATGGAGAATCTTGCCACTTTAGCTTATGGGCTGGAAGAAACCCAAGCTTATgcttttgataataatgattcaGAGTCATCTCACAATGACATGATTGAAGCTACCCAAGCATATGGTATTGATGGTCCATCTGCAGAGGAGACAGGGCCACTAGCACAGTTGTATGCAGCATCTACTGTTCAGGGTGGGgtgaCAGGCatagatgaaaataaaaatggtgTATCAGCTGTTAGTGAAGTGGATATAAGTAAACCTTCCTCAAGCTCTGCTGTTGATGTAGTGGATGACTCTCAAGACCGTGAAGATGTAATGCCACGGCGATCACGTTCTACAAGGGGAAGGAAAAAGCCAGTTATTGAAGACTCTCAAGAAGTGGGATCAGCTGAAAATTATGCAGTGTCTGTGGTAGAAATATCAAATAATGACAAAAGAGAGGAAACTAAAGTGGAAAGTACACCAGGCAGTATTTTAAATAGAAATGGTAAAAATTCTCGAGTGACTCTTTCCAGCAGAAAGGGAAGAAGAGGGGCAATGAGGGTAACAATTGACTCTGGAATGCCAGATGAGGATGAAGGTAAAGAAACATTGTCAAGAGGAGGACAGAGTGGAACAAAGGAGACAAATGCATCTGAGAGTCAAGACAAAGAGACTTCTAAAGTGCCAGCTTcaacagggagaaaaagaagaagacaagctgggaaaggaaaatttattgaaGAGATGGAAGGAACAACCATAAGAAAATCAAGAAGAGGACAAAAAGGAAAGGGAGCACAAATGGAAGCCACATTTCTGCCAGAAACACCTCCTATGCCATCCACAGACACTACTGCTAAAGAGATAAGAGAGAGTCCACCAGATTCATCAGCTGAAGCTGTTCCAACAAgaggaaaagggaaaggaagaggaaagggaagaggaaggaaaaatgAACAGTTGGTGGAGGAATCAGTGGCAAGGGAATCCATTGGTTCAGAGATATCTACCATCTCTAATGAACCAGAGCCCCCAGAAACTGTGAGTACACCTGCCAGAGGGAAGGGTCGAGGCAAAGGCAGAGGAATCAAAGCTCAGCCAAAGATAGGCATGGATCATGAATTAGAAGCATCTGCAAGTACTTCTCCACAAAAAACAAGTGAATCCATTGGTTCAGAGATATCTACCATCTCTAGTGAACCAGAGCCCCCAGAAACTGTAAGTACACCTGCCAGAGGGAAGGGTCGAGGCAAAGGCAGAGGAATCAAAGCTCAGCCAAAGATAGGCATGGATCATGAATCAGGAGCATCTGCAAATACTTCTCCACAAACAGAGACCCCCACTGTTAATGTCAATGAGTTGCAGCCATCAGAATCACCTGCCAGTGTCTCAACTTCAAAAAGAAAGAGTAGAGGCAGGAAGAGAATACAACCTACAGCAGCTGAATCAGAGgCTTTGGTGTCATCAGAAGGTACAGAATATTCTGAGACTATTGCAGACTCAGAGGAAAGCTCAACAGCTGGAAGCAGTCAGCAAAGTTGCAGAGTGAGACCAAGGAAGCAACAACCAGAGGACTCTGAGTCAGTGGAGATGGTGGAAACACCAGCAAAGAGAGGGAGGCGTGGAAAGGAGCCTTCTGTGAACCGAAGCCCATCCTTACAGAGGGGAAGGTCTTCTACTGAAAATAGTCCAAGGATAATTTTCACAGGCCTTTATGATAAACAGGGTGAAAAAGTTGTGATAAGCTTAGGAGGTCAGCTGGTGGATAACATTCACAACTGCACTCATCTGGTTACTGATAAGGTACGGCGCACGGTCAAGTTCTTATGTGGTCTTGCCGGTGGGCAGATCATTGTTCTTCCTTCATGGCTAGAAGCTTGTAAAAAGGCAAAGAGTTTTGTAGACACATCACCATTCTTAGTTAAGGATAAAGATGCAGAGAAGCAATATAATTTTGATCTTCAAAGatCTCATGAAGTTGCACTCACTAAGGGTCTTTTAGAGGGTTACAAGGTGCATGTAACAAAGAAAGTTAAACCAGAACCATCACAGATGAAAGaCATAATTCAGAGTGCCAAAGGAGAGTTCTTGACCAGTATGCCAAGAAGTAAAGAGGACAGAGTTTTTGTGATCTCTTGTAACGATGACAGAAGTGTTTGTAGAAAACCAATGGAAGCTGGCATCCCTGTGGTCAGTGCTGAAGTTCTTCTCACTGGAGTATTGCAACAAGAGCTTAATCTTGAAGAATACAAATTATTTGCTGAGGAAATGTCTGATACAACTCAGGAGACAAGCAGTTTAAGtggacaaaacaaaagaaggaatgaAACATCAGAAGGAGGTGGTGCAACATCATCATCCTCAACACCAGGGGCAAAGAACTCAGGGtccaaaagaagaaagagatgacCTATTCTTTGCTTTTAAAGGTCATGTTTACCACATTTAAGATGCTCAGAAATGTACCAGGATCTTAGAAATCAGTTAATGGTTTGGTTTTGTGGAGGAGGGTTGGAGCCAGTGGAATGACAGCTCTGATGGGTGCAAGAAAAACTCTCCATTACCTTGGAAACTCTGAGATTCAAAGCACAATAAGCCtttgcactaaaaaaaaaaaataggagaaaagaaagagacCTTTTCACATGGAGAACTATAATTATAGTCTAGCTAATAATCTAAAAGTCTAATACAACCTAAATATCATAGATCAAATACTTGACTTTTAGAACTGTCAAGGGTATGAATGCTGTGGAATCTTCCTGCAAAGAACACACTCACAACTAGGTGAAATGTCCCCTGTATAGAAGTTCCTTGAATGATCGTATCTGATTCAAAGATTAAAGGAACATCTCTTCACTTGAGACTGATATTTGTTTGCCCTGGAATGGAGGTTTCCCAAAAGAGAGTTTACTctgcatatttttttctctagcTGTGTGCTTAAcagatttctttctctctttgtaCTTCTGTAAAGTTTTTCTGTAGAGGATCCGATGCATTGAGCTCTGTTGCTGACATTTTTACCCACCAAGGAGAGTGTGTTTATATTTGATCATATTTGAGTTCCCAGTTCTCAACTGAAAGTAGGAAATCAAGGTGCAACATACAACAGAGAGGACAAAGCTGTGCATAGATGATCTGATGATAAATGATCATGAGATtcttaaagcaatgaaaaagaTGGTCTTCATGAAGATACCTTTTAGATAGTTTATATAAACagatatacatgtatgtttgcTTTTAGAGTTGGTGTTCATGCTTTTTATATGCTAAAGTTTGACAAAAAAGTGGCAGCTATAATGGGCCCATTTAGTTGTGTAAAGCCTTGTGTTAGCCACTGTGAAAGGTTATGTTTTACCGTCtgcagtaaaaaataaatattttaatcacaCCACAAAAAGTTTGCACCtgcaaggatttttttctagATGTAAATTTAATACATAATGCACCCTTAACCCTTTATTTCCCAAGATCTCTTTAAactagtaattctccctactttCCTCTGCATAATTCtgatgatgttagtttggagaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16589 all species →	BRCT_2	BRCT domain, a BRCA1 C-terminus domain	Family	Interproscan
PF16770 all species →	RTT107_BRCT_5	Regulator of Ty1 transposition protein 107 BRCT domain	Domain	Interproscan
PF00498 all species →	FHA	FHA domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR051579 all species →	Family	DNA Damage Response and Transcriptional Regulator	Interproscan
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR000253 all species →	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23196 all species →	PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20780	MDC1; mediator of DNA damage checkpoint protein 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.