Gene detail

Detailed information of PFX24136.1 in Stylophora pistillata

Genomic Location: Spis.scaffold185:72356...79276
NR annotation: no NCBI-NR hit recorded
Species Stylophora pistillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

CCHCR1

ATGGCGGGTAAAAGCAAAAATGCGACAGATAGGTTTCTTTCTCCTGCATATTTTCAAGTTACACGACCCAAGATCCCCTCACAACAAAGCACTTCAGCTCCTTGGAAGCTTCTTCCTCCATCTGAATATGATGTTGTTAAAGATCAGAGCGAAGAAACTGACAAAGTCGTCGTTGAAATAAACAGATTGCAGAATGAAAATAAACAGCTTCGAGAGCAGCTTCAGAGGTCTAAAGAGGAGGAAATACGACTTGAAGGCGAGATGCGAAAGAGCAGGCTTTTGGTACAAAAGGGTAGAGTCGATGATGCCCTTGATCTGAAAAAAATGGCTGAACTTCAAGAGGAAAATCTCTCGCTGCAATCGGAAGTTAAAAAGCTTCGAGCTACAAACTCGAAACTAAAAATAGACGTTAAAGAGGTTAAAATTAACTTCGAAACAGACTTAGGAAGATGTGAAGCCGAGCTAGAGAAGGCGCAAACGTTGATAAAAGAGCTAAAAGCTGAAATAAGGCAAAAGGAAGAAATATTCGAGAGGGAAGTGGAGAGTTTGGAGAAACGCGCTAGAAAGCAGATGGCAGTGGTGAAAAGTTTGAAAGCTCAAGTGAAAAATTCAGAAGAACAAGTGAAGATTGACAGGAAAGGGTTTGAGGATGTGATAAGTAAAAATGAATTTGACAAGTATGAGCAAGTTAAGGCACTTCAAAAAACTTTAGAAACCTCTGAGGCAAAGTATGCCAAAGAGTTACATTCTCTCAAAGATGAGATCTCCAGAAGCCGTGAGATTTACTCTGCCGCAAAAATGAAGCAGATTGCTACAGATGAAGAGGTAAATGATCTAAAGGAAAAACTAAAAGAAAAAGAAATGGAGTGTTCAACAGTTTTAAAAGAGCATCAAGGAAAGATGAGGGATAGCCAATTACACTATGATCAAACACTGACAGACCTTAGCAGGAAATTGGAGGAACAAACAGTTTTTCATCAAAGAGAACTACTGAATTTTACAGAGAAGCTTAAAAAGAAAGATGAGGAAGTGAAGTCGCAAAGTTTGATTGTTGATCAGTTAAGAGCTTATATTGGAGAGAACCTGCCAAACACACAGCTGGAGAAACTCCAAACAGAACTTGAAGAGGCAAAACAAGCTATGACCAGCTTGATACAAGAAAATGAAAATTTAAGATCCACTGTGGAACTCCTTAATGTGAGACTTTCATCCATCAATGAAATCCTCTCCATTCAAGAAAAAGAATTGATGAAGTTTCAAGGGAAATCAAATGGTGGTACAGGGCATGATGGAAATGGTTTGCTTACAAAATGGAGAGAAAAGGTGTTTGCCTTGCTGATTCAATTAAAATCACAAGAGGTTTTGCATGAAAAAGAGGAAAGAAATGAGAAGACTCAGCTGAAACATCTGATGACAGAGTTGGAAGAATCCCAGAAGGAAGTAGCCAAGTTGACACATATTTTAGCTGACAAGAAGGCTGAACAGCAAATTGAAGTCAATAGAAACCTTGCTCTAGAAAGGCAACTTGAGAAGTGTCAGAAAAATGAGAAAACGCTCAGTTCTTTCATTTCACAATTTCAAATGTGTTCCTGCAGTCTGCAGGAAGTTGCACAAAAGACAGAATCTTTTATAGAACATGTTGGGATGCAAATGGAGGAGGCCTTCAAAAAACTTGCCACATTTTCGCAGCGTATTAGCTTTGCGTCTGGAAGAGTTCAATTTCTTCAAGGGCTTATAACACACCGTGAGGCACAGTTGAGAAGTGAACTTTCAGAAGCAGTTACTAAAGCTGCGGAAACTGGGTTATCAATATCTGACGGGGGGATCACAGAACAACATGAGGCAAGTCTGTCGTGTGAACAGTTGGTATCCGAGGTCAAACAGCTAACTAAAGAAAGGGACCATCTTTTAGCTCAGGCCAGGAAGGATTCAGAGACTTTGGAGAGAAAAGAGGTAGTGATCAGAGCTCAGTGTGAGCAGCAACTGAAGGACTCTGCTGTGAAAATATCACAGTTGGAGTCATTCTTAAAGGATGAACGGGAACGAGGAGCCATTCTAAATGACAAGTTACAAACTGCTGAGGTGGAATTGTCAGAGAGATTGGAGACAATAGAATCACTTAAAACAGAAATGGCAAAACACAAAGATGTGGCTGAAAAAACTCTAGAAATAGTTTTACAAGCAGAGCAAGTGAGATACACTGAGGAATTTGCAAAGCTGGAGAAGCAATTCAATGATGTGCGGCGTGAACACACAAAAGCTGTCGTAGCACTCAGACAAGCAGAGCGACAAGTTGAACGAGAGAAGGAAAAGGCAGCAGAGCAGCTGGCTCTTGAGCAGAAGGAATATGAAATGAAACTGGAGAAATGCTGCGCACAACTGCGACACATGGAAAAGGAAAGAAATATGCTCATGGCTACAGTCCGACAGGAGGGTTTCAAGGTTCCCAGACTTAAACCAAAGGAGTTTACAGATGGAAGGGAGGAAGAAGAGAAAGAAAACAGAGAGCGAGTGCCTCTCCACGAGAAACAACCCATAAAAACCAGTAAAGGAAAGGTTAAACAAAACAAGGCTGCAAAATCTGTTCAATCTGAACCAGGAATTCCATCTACTGCAGCAGTACAAAGTGAAAGACAGAATGTCCGAGTAAAAGAAGGTGGAGCTGATGAAGAAATGAATTTGATACAAGTGACATCTGTGCTGAAAGACCTTCAGTCGCTCTCAACCGCTCTGCTGAATATGGACAGAGAGACTGATGACTCACAAAATTCTTTGTAA

Transcript

rna-Spis11268_mrna

AGAAAATGGCGGGTAAAAGCAAAAATGCGACAGATAGGTTTCTTTCTCCTGCATATTTTCAAGTTACACGACCCAAGATCCCCTCACAACAAAGCACTTCAGCTCCTTGGAAGCTTCTTCCTCCATCTGAATATGATGTTGTTAAAGATCAGAGCGAAGAAACTGACAAAGTCGTCGTTGAAATAAACAGATTgcagaatgaaaataaacagcTTCGAGAGCAGCTTCAGAGGTCTAAAGAGGAGGAAATACGACTTGAAGGCGAGATGCGAAAGAGCAGGCTTTTGGTACAAAAGGGTAGAGTCGATGATGCccttgatctgaaaaaaatggCTGAACTTCAAGAGGAAAATCTCTCGCTGCAATCGGAAGTTAAAAAGCTTCGAGCTACAAACTCGAAACTAAAAATAGACGTTAAAGAGGTTAAAATTAACTTCGAAACAGACTTAGGAAGATGTGAAGCCGAGCTAGAGAAGGCGCAAACGTTGATAAAAGAGCTAAAAGCTGAAATAAGGCAAAAGGAAGAAATATTCGAGAGGGAAGTGGAGAGTTTGGAGAAACGCGCTAGAAAGCAGATGGCAGTGGTGAAAAGTTTGAAAGCTCAAGTGAAAAATTCAGAAGAACAAGTGAAGATTGACAGGAAAGGGTTTGAGGATGTGATAAGTAAAAATGAATTTGACAAGTATGAGCAAGTTAAGGCACTTCAAAAAACTTTAGAAACCTCTGAGGCAAAGTATGCCAAAGAGTTACATTCTCTCAAAGATGAGATCTCCAGAAGCCGTGAGATTTACTCTGCCGCAAAAATGAAGCAGATTGCTACAGATGAAGAGGTAAATGATCTAaaggaaaaactaaaagaaaaagaaatggagtgttcaacagttttaaaagagcATCAAGGAAAGATGAGGGATAGCCAATTACACTATGATCAAACACTGACAGACCTTAGCAGGAAATTGGAGGAACAAACAGTTTTTCATCAAAGAGAACTACTGAATTTTACAGAGaagcttaaaaagaaagatgaGGAAGTGAAGTCGCAAAGTTTGATTGTTGATCAGTTAAGAGCTTATATTGGAGAGAACCTGCCAAACACACAGCTGGAGAAACTCCAAACAGAACTTGAAGAGGCAAAACAAGCTATGACCAGCTTGatacaagaaaatgaaaatttaagatCCACTGTGGAACTCCTTAATGTGAGACTTTCATCCATCAATGAAATCCTCTCCattcaagaaaaagaattgATGAAGTTTCAAGGGAAATCAAATGGTGGTACAGGGCATGATGGAAATGGTTTGCTTACAAAATGGAGAGAAAAGGTGTTTGCCTTGCTGATTCAATTAAAATCACAAGAGGTTTTGcatgaaaaagaggaaagaaatgaGAAGACTCAGCTGAAACATCTGATGACAGAGTTGGAAGAATCCCAGAAGGAAGTAGCCAAGTTGACACATATTTTAGCTGACAAGAAGGCTGAACAGCAAATTGAAGTCAATAGAAACCTTGCTCTAGAAAGGCAACTTGAGAAGTGTcagaaaaatgagaaaacgctcagttctttcatttcacaatttcaaatGTGTTCCTGCAGTCTGCAGGAAGTTGCACAAAAGACAGAATCTTTTATAGAACATGTTGGGATGCAAATGGAGGAGGCCTTCAAAAAACTTGCCACATTTTCGCAGCGTATTAGCTTTGCGTCTGGAAGAGTTCAATTTCTTCAAGGGCTTATAACACACCGTGAGGCACAGTTGAGAAGTGAACTTTCAGAAGCAGTTACTAAAGCTGCGGAAACTGGGTTATCAATATCTGACGGGGGGATCACAGAACAACATGAGGCAAGTCTGTCGTGTGAACAGTTGGTATCCGAGGTCAAACAGCTAACTAAAGAAAGGGACCATCTTTTAGCTCAGGCCAGGAAGGATTCAGAGACTTTGGAGAGAAAAGAGGTAGTGATCAGAGCTCAGTGTGAGCAGCAACTGAAGGACTCTGCTGTGAAAATATCACAGTTGGAGTCATTCTTAAAGGATGAACGGGAACGAGGAGCCATTCTAAATGACAAGTTACAAACTGCTGAGGTGGAATTGTCAGAGAGATTGGAGACAATAGAATCACTTAAAACAGAAATGGCAAAACACAAAGATGTGGCTGAAAAAACTCTAGAAATAGTTTTACAAGCAGAGCAAGTGAGATACACTGAGGAATTTGCAAAGCTGGAGAAGCAATTCAATGATGTGCGGCGTGAACACACAAAAGCTGTCGTAGCACTCAGACAAGCAGAGCGACAAGTTGAACGAGAGAAGGAAAAGGCAGCAGAGCAGCTGGCTCTTGAGCAGAAGGAATATGAAATGAAACTGGAGAAATGCTGCGCACAACTGCGACAcatggaaaaggaaagaaatatgCTCATGGCTACAGTCCGACAGGAGGGTTTCAAGGTTCCCAGACTTAAACCAAAGGAGTTTACAGATGGAAGggaggaagaagagaaagaaaacagagagcGAGTGCCTCTCCACGAGAAACAACCCATAAAAACCAGTAAAGGAAAGGTTAAACAAAACAAGGCTGCAAAATCTGTTCAATCTGAACCAGGAATTCCATCTACTGCAGCAGTACAAAGTGAAAGACAGAATGTCCGAGTAAAAGAAGGTGGAGCTGATGAAGAAATGAATTTGATACAAGTGACATCTGTGCTGAAAGACCTTCAGTCGCTCTCAACCGCTCTGCTGAATATGGACAGAGAGACTGATGACTCACAAAATTCTTTGTAATGTAAATTCAGAGTGACTTGTAAATGTTTCTTTACAATTATAACATTCAGATTTAAACTGAAAATGGTCCAGCTGAGGCATACCCAgagcttttctttcaaaacttcaaTTAAACTAAACCCTAGGCAATATCAAATTTATAACATTgatatgttttgtttgtta

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07111 all species →	HCR	Alpha helical coiled-coil rod protein (HCR)	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009800 all species →	Family	Coiled-coil alpha-helical rod protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46822 all species →	COILED-COIL ALPHA-HELICAL ROD PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0006611 all species →	Biological Process	protein export from nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16760	CCHCR1; coiled-coil alpha-helical rod protein 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.